UHGV-0075590

Genome information

Genome length 22,086 bps

CDS count 40

Completeness 54.87% (medium-quality)

geNomad score 0.9660

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075590
vOTU ID	vOTU-041360
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_110821
BioSample	SAMEA2580089
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9660
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-4.84
Jumbo phage	No

Genome content
Genome length	22,086 bps
GC content	44.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	84.23%
Average CDS length	471.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075590_1	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0075590_1	UniRef90	UniRef90_UPI001106A636	minor capsid protein	NA
UHGV-0075590_1	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0075590_1	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0075590_1	COG	COG2369	NA	NA
UHGV-0075590_2	PHROG	phrog_533	portal protein	head and packaging
UHGV-0075590_2	UniRef90	UniRef90_A0A1C7G7K7	Capsid protein	NA
UHGV-0075590_2	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0075590_2	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0075590_3	PHROG	phrog_28292	NA	unknown function
UHGV-0075590_3	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-0075590_3	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-0075590_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0075590_5	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0075590_5	UniRef90	UniRef90_A0A1C6HKR0	Phage terminase, large subunit, PBSX family	NA
UHGV-0075590_5	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0075590_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0075590_5	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0075590_6	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0075590_6	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0075590_6	UniRef90	UniRef90_A0A3E2WBT1	Terminase small subunit	NA
UHGV-0075590_6	eggNOG-mapper	1304866.K413DRAFT_0812	Terminase small subunit	NA
UHGV-0075590_6	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0075590_6	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0075590_6	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0075590_7	PHROG	phrog_18731	NA	unknown function
UHGV-0075590_7	eggNOG-mapper	1211817.CCAT010000041_gene3730	NA	NA
UHGV-0075590_7	Structural annotation	PF11325, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0075590_8	PHROG	phrog_9194	NA	unknown function
UHGV-0075590_8	UniRef90	UniRef90_UPI00082E0791	nucleotidyltransferase domain-containing protein	NA
UHGV-0075590_8	eggNOG-mapper	316056.RPC_4006	NA	NA
UHGV-0075590_9	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0075590_9	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0075590_9	eggNOG-mapper	33035.JPJF01000139_gene3002	NA	NA
UHGV-0075590_9	Structural annotation	PF04545	NA	NA
UHGV-0075590_10	AcrCatalog	cluster_47354	NA	NA
UHGV-0075590_12	Structural annotation	PF04319	NA	NA
UHGV-0075590_13	KOfam	K07486	K07486; transposase	NA
UHGV-0075590_13	PHROG	phrog_2199	transposase	integration and excision
UHGV-0075590_13	UniRef90	UniRef90_G5FG78	DEDD_Tnp_IS110 domain-containing protein	NA
UHGV-0075590_13	eggNOG-mapper	742741.HMPREF9475_03774	COG COG3547 Transposase and inactivated derivatives	NA
UHGV-0075590_13	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-0075590_13	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-0075590_13	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-0075590_13	COG	COG3547	Transposase	NA
UHGV-0075590_13	Structural annotation	PF01548, PF02371, MF_00651, NF033542, COG3547	NA	NA
UHGV-0075590_14	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0075590_14	UniRef90	UniRef90_UPI0006DCB293	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0075590_14	eggNOG-mapper	665956.HMPREF1032_02557	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0075590_14	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0075590_14	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0075590_15	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0075590_15	UniRef90	UniRef90_R0D7I5	PAPS_reduct domain-containing protein	NA
UHGV-0075590_15	eggNOG-mapper	665956.HMPREF1032_02682	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0075590_15	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0075590_15	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0075590_19	PHROG	phrog_1454	NA	unknown function
UHGV-0075590_19	eggNOG-mapper	742740.HMPREF9474_04325	NA	NA
UHGV-0075590_20	UniRef90	UniRef90_A0A1E3U7L9	LexA_DNA_bind domain-containing protein	NA
UHGV-0075590_20	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0075590_21	PHROG	phrog_15768	NA	unknown function
UHGV-0075590_21	UniRef90	UniRef90_C0DA60	NA	NA
UHGV-0075590_21	eggNOG-mapper	33035.JPJF01000122_gene2459	NA	NA
UHGV-0075590_21	AcrCatalog	cluster_38323	NA	NA
UHGV-0075590_21	Pfam	PF19808	NA	DUF6291
UHGV-0075590_21	Structural annotation	PF19808	NA	NA
UHGV-0075590_22	PHROG	phrog_2113	NA	unknown function
UHGV-0075590_22	Structural annotation	PF01978, TIGR01610, COG3388	NA	NA
UHGV-0075590_23	PHROG	phrog_398	NA	unknown function
UHGV-0075590_23	UniRef90	UniRef90_UPI001E5E0390	putative HNHc nuclease	NA
UHGV-0075590_23	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0075590_23	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0075590_23	Structural annotation	PF16784	NA	NA
UHGV-0075590_24	PHROG	phrog_14970	NA	unknown function
UHGV-0075590_24	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0075590_24	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0075590_24	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0075590_25	Structural annotation	PF11302, MF_00085, NF003076, COG0231	NA	NA
UHGV-0075590_29	PHROG	phrog_36464	NA	unknown function
UHGV-0075590_29	UniRef90	UniRef90_R6QN85	50S ribosomal protein L11 domain protein	NA
UHGV-0075590_29	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-0075590_29	Structural annotation	PF09035	NA	NA
UHGV-0075590_30	eggNOG-mapper	742740.HMPREF9474_03483	NA	NA
UHGV-0075590_30	Structural annotation	PF13601, MF_01819, NF008565, COG1846	NA	NA
UHGV-0075590_32	UniRef90	UniRef90_UPI0006C815FC	helix-turn-helix domain-containing protein	NA
UHGV-0075590_32	eggNOG-mapper	1329250.WOSG25_021910	Helix-turn-helix XRE-family like proteins	NA
UHGV-0075590_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0075590_32	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0075590_33	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0075590_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0075590_33	UniRef90	UniRef90_UPI00192D7752	helix-turn-helix domain-containing protein	NA
UHGV-0075590_33	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0075590_33	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0075590_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0075590_33	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0075590_34	PHROG	phrog_87	metallo-protease	other
UHGV-0075590_34	UniRef90	UniRef90_UPI001923E1F1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0075590_34	eggNOG-mapper	318464.IO99_00420	IrrE N-terminal-like domain	NA
UHGV-0075590_34	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0075590_34	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0075590_34	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0075590_35	PHROG	phrog_4431	NA	unknown function
UHGV-0075590_35	UniRef90	UniRef90_UPI001924AC1A	SHOCT domain-containing protein	NA
UHGV-0075590_35	eggNOG-mapper	1298920.KI911353_gene4876	NA	NA
UHGV-0075590_35	Pfam	PF06897	NA	DUF1269
UHGV-0075590_35	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0075590_35	Structural annotation	PF05120	NA	NA
UHGV-0075590_36	KOfam	K14059	int; integrase	NA
UHGV-0075590_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0075590_36	UniRef90	UniRef90_A0A1C6K4B6	Tyrosine recombinase XerD	NA
UHGV-0075590_36	eggNOG-mapper	742740.HMPREF9474_03478	DNA integration	NA
UHGV-0075590_36	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0075590_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0075590_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0075590_36	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0075590_37	UniRef90	UniRef90_UPI00156F2295	helix-turn-helix domain-containing protein	NA
UHGV-0075590_37	eggNOG-mapper	1120998.AUFC01000012_gene488	sequence-specific DNA binding	NA
UHGV-0075590_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0075590_37	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0075590_39	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0075590_39	UniRef90	UniRef90_UPI00189EB32E	Rha family transcriptional regulator	NA
UHGV-0075590_39	eggNOG-mapper	742740.HMPREF9474_03525	phage regulatory protein, rha family	NA
UHGV-0075590_39	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0075590_39	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0075590_39	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0075590_39	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0075590_40	eggNOG-mapper	742740.HMPREF9474_03524	Ami_2	NA
UHGV-0075590_40	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA