UHGV-0075677

Genome information

Genome length 39,016 bps

CDS count 48

Completeness 98.38% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075677
vOTU ID	vOTU-014714
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_136008
BioSample	SAMEA2737719
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.38% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.7
Jumbo phage	No

Genome content
Genome length	39,016 bps
GC content	42.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	94.43%
Average CDS length	771.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075677_1	Pfam	PF01022	Bacterial regulatory protein, arsR family	HTH_5
UHGV-0075677_2	PHROG	phrog_15198	NA	unknown function
UHGV-0075677_2	UniRef90	UniRef90_A0A3R6QEJ7	NA	NA
UHGV-0075677_2	eggNOG-mapper	1235799.C818_04211	NA	NA
UHGV-0075677_2	Pfam	PF04448	NA	DUF551
UHGV-0075677_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0075677_6	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0075677_6	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0075677_6	Structural annotation	PF04545	NA	NA
UHGV-0075677_8	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0075677_8	UniRef90	UniRef90_R5J299	Phage terminase small subunit	NA
UHGV-0075677_8	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-0075677_8	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0075677_8	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0075677_8	COG	COG5484	NA	NA
UHGV-0075677_8	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0075677_9	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0075677_9	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0075677_9	UniRef90	UniRef90_R5ILS3	Phage terminase large subunit PBSX family	NA
UHGV-0075677_9	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0075677_9	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0075677_9	COG	COG1783	Phage terminase large subunit	NA
UHGV-0075677_9	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0075677_10	PHROG	phrog_533	portal protein	head and packaging
UHGV-0075677_10	UniRef90	UniRef90_A0A396QLL8	Phage portal protein	NA
UHGV-0075677_10	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0075677_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0075677_10	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0075677_11	UniRef90	UniRef90_A0A496N3Q2	Minor capsid protein (Fragment)	NA
UHGV-0075677_11	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-0075677_11	COG	COG2369	NA	NA
UHGV-0075677_12	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0075677_12	UniRef90	UniRef90_UPI001D0859FA	phage minor capsid protein	NA
UHGV-0075677_12	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-0075677_12	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0075677_12	COG	COG2369	NA	NA
UHGV-0075677_12	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0075677_13	PHROG	phrog_27009	NA	unknown function
UHGV-0075677_15	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0075677_15	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0075677_15	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0075677_15	Pfam	PF14359	NA	DUF4406
UHGV-0075677_15	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0075677_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0075677_16	UniRef90	UniRef90_UPI001D07762B	phage scaffolding protein	NA
UHGV-0075677_16	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0075677_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0075677_16	Structural annotation	PF06810	NA	NA
UHGV-0075677_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0075677_17	UniRef90	UniRef90_A0A3R6X865	Phage major capsid protein	NA
UHGV-0075677_17	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-0075677_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0075677_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0075677_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0075677_17	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0075677_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0075677_18	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0075677_19	PHROG	phrog_3366	NA	unknown function
UHGV-0075677_19	eggNOG-mapper	411902.CLOBOL_00132	NA	NA
UHGV-0075677_19	Pfam	PF20536	NA	DUF6751
UHGV-0075677_19	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0075677_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0075677_20	UniRef90	UniRef90_UPI0015948E32	minor capsid protein	NA
UHGV-0075677_20	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-0075677_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0075677_20	Structural annotation	PF11114	NA	NA
UHGV-0075677_21	PHROG	phrog_3266	tail completion	connector
UHGV-0075677_21	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-0075677_21	Structural annotation	PF20765	NA	NA
UHGV-0075677_22	PHROG	phrog_3099	NA	unknown function
UHGV-0075677_22	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0075677_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0075677_23	PHROG	phrog_11299	NA	unknown function
UHGV-0075677_23	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-0075677_23	Structural annotation	PF10666	NA	NA
UHGV-0075677_24	PHROG	phrog_706	NA	unknown function
UHGV-0075677_24	UniRef90	UniRef90_UPI0011DC8B0C	Gp15 family bacteriophage protein	NA
UHGV-0075677_24	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0075677_24	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0075677_24	Structural annotation	PF06854	NA	NA
UHGV-0075677_25	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0075677_25	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0075677_25	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0075677_25	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0075677_26	PHROG	phrog_1194	NA	unknown function
UHGV-0075677_26	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-0075677_26	Pfam	PF20458	NA	DUF6711
UHGV-0075677_26	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0075677_27	PHROG	phrog_18190	NA	unknown function
UHGV-0075677_27	UniRef90	UniRef90_R5ILV2	Peptidase S74 domain-containing protein	NA
UHGV-0075677_27	eggNOG-mapper	1298920.KI911353_gene2679	NA	NA
UHGV-0075677_27	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0075677_27	Structural annotation	PF14594, NF033848, COG3501	NA	NA
UHGV-0075677_29	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0075677_29	PHROG	phrog_11157	NA	unknown function
UHGV-0075677_29	UniRef90	UniRef90_A0A417ABU7	Big_13 domain-containing protein	NA
UHGV-0075677_29	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0075677_29	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0075677_29	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0075677_29	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0075677_29	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0075677_30	PHROG	phrog_32322	NA	unknown function
UHGV-0075677_30	UniRef90	UniRef90_R5ILQ9	Ig-like_bact domain-containing protein	NA
UHGV-0075677_30	eggNOG-mapper	1280698.AUJS01000007_gene1055	NA	NA
UHGV-0075677_30	Pfam	PF13754	NA	Big_3_4
UHGV-0075677_30	Structural annotation	PF13754	NA	NA
UHGV-0075677_31	eggNOG-mapper	742765.HMPREF9457_03366	NA	NA
UHGV-0075677_31	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0075677_33	PHROG	phrog_2012	minor tail protein	tail
UHGV-0075677_34	PHROG	phrog_918	NA	unknown function
UHGV-0075677_34	UniRef90	UniRef90_UPI00096A904F	NA	NA
UHGV-0075677_34	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-0075677_34	Pfam	PF19791	NA	DUF6275
UHGV-0075677_34	Structural annotation	PF19791	NA	NA
UHGV-0075677_35	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0075677_35	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0075677_35	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0075677_35	Pfam	PF14359	NA	DUF4406
UHGV-0075677_35	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0075677_36	eggNOG-mapper	742740.HMPREF9474_04291	NA	NA
UHGV-0075677_37	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0075677_37	Structural annotation	NF040910	NA	NA
UHGV-0075677_38	PHROG	phrog_199	holin	lysis
UHGV-0075677_38	UniRef90	UniRef90_A0A417U634	Holin	NA
UHGV-0075677_38	eggNOG-mapper	1235793.C809_01935	Bacteriophage holin family	NA
UHGV-0075677_38	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0075677_38	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0075677_38	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0075677_38	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0075677_39	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0075677_39	PHROG	phrog_7	endolysin	lysis
UHGV-0075677_39	UniRef90	UniRef90_UPI00115BF0FD	glycoside hydrolase family protein	NA
UHGV-0075677_39	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0075677_39	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0075677_39	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0075677_39	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0075677_39	HAMAP	MF_04110	Endolysin	NA
UHGV-0075677_39	Structural annotation	PF19127, MF_04110, TIGR04035, COG3772	NA	NA
UHGV-0075677_40	PHROG	phrog_12105	NA	unknown function
UHGV-0075677_40	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0075677_41	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0075677_41	eggNOG-mapper	1321782.HMPREF1986_00351	NA	NA
UHGV-0075677_41	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0075677_42	UniRef90	UniRef90_A0A3R6THL3	Tail fiber domain-containing protein	NA
UHGV-0075677_42	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0075677_42	Structural annotation	NF041249	NA	NA
UHGV-0075677_43	PHROG	phrog_5668	tail fiber protein	tail
UHGV-0075677_43	UniRef90	UniRef90_A0A396K685	Tail fiber domain-containing protein	NA
UHGV-0075677_43	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0075677_43	Structural annotation	NF041249	NA	NA
UHGV-0075677_45	PHROG	phrog_2307	L-alanyl-D-glutamate peptidase	other
UHGV-0075677_45	UniRef90	UniRef90_A0A396K636	NA	NA
UHGV-0075677_45	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0075677_45	Pfam	PF12200	NA	DUF3597
UHGV-0075677_46	PHROG	phrog_22978	NA	unknown function
UHGV-0075677_46	UniRef90	UniRef90_A0A396KH15	PBECR3 domain-containing protein	NA
UHGV-0075677_46	eggNOG-mapper	1321782.HMPREF1986_00356	NA	NA
UHGV-0075677_46	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0075677_48	KOfam	K11527	K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]	NA
UHGV-0075677_48	PHROG	phrog_20458	NA	unknown function
UHGV-0075677_48	UniRef90	UniRef90_A0A355PQU7	Stage 0 sporulation protein A homolog (Fragment)	NA
UHGV-0075677_48	eggNOG-mapper	411459.RUMOBE_00333	ATPase histidine kinase DNA gyrase B HSP90 domain protein	NA
UHGV-0075677_48	Pfam	PF00512	His Kinase A (phospho-acceptor) domain	HisKA
UHGV-0075677_48	Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
UHGV-0075677_48	COG	COG0642	Signal transduction histidine kinase	NA