UHGV-0075764

Genome information

Genome length 38,740 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075764
vOTU ID	vOTU-060082
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_112138
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.38
Jumbo phage	No

Genome content
Genome length	38,740 bps
GC content	47.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.80%
Average CDS length	697.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075764_1	KOfam	K14059	int; integrase	NA
UHGV-0075764_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0075764_1	UniRef90	UniRef90_A0A1C5QPZ2	Integrase	NA
UHGV-0075764_1	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-0075764_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0075764_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0075764_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0075764_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0075764_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0075764_2	eggNOG-mapper	180332.JTGN01000007_gene3629	NA	NA
UHGV-0075764_3	UniRef90	UniRef90_UPI001EDE047F	phage minor capsid protein	NA
UHGV-0075764_3	eggNOG-mapper	1123263.AUKY01000072_gene2115	NA	NA
UHGV-0075764_3	Structural annotation	PF06152	NA	NA
UHGV-0075764_4	PHROG	phrog_87	metallo-protease	other
UHGV-0075764_4	UniRef90	UniRef90_UPI0015D3F2DD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0075764_4	eggNOG-mapper	556261.HMPREF0240_01267	Zn peptidase	NA
UHGV-0075764_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0075764_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0075764_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0075764_5	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0075764_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0075764_5	UniRef90	UniRef90_A0A1C5QQD0	Transcriptional regulator, y4mF family	NA
UHGV-0075764_5	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-0075764_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075764_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0075764_5	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0075764_6	UniRef90	UniRef90_UPI00156EFEB1	helix-turn-helix domain-containing protein	NA
UHGV-0075764_6	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0075764_6	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0075764_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0075764_8	PHROG	phrog_6058	NA	unknown function
UHGV-0075764_8	UniRef90	UniRef90_A0A1C5QR48	Helix-turn-helix	NA
UHGV-0075764_8	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0075764_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075764_8	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0075764_10	PHROG	phrog_3777	NA	unknown function
UHGV-0075764_10	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0075764_10	Structural annotation	PF18441	NA	NA
UHGV-0075764_11	Structural annotation	PF19128	NA	NA
UHGV-0075764_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075764_13	UniRef90	UniRef90_UPI0015715373	YqaJ viral recombinase family protein	NA
UHGV-0075764_13	eggNOG-mapper	411902.CLOBOL_00693	YqaJ-like viral recombinase domain	NA
UHGV-0075764_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0075764_13	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0075764_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0075764_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0075764_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0075764_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0075764_14	UniRef90	UniRef90_UPI00156E3AA2	recombinase RecT	NA
UHGV-0075764_14	eggNOG-mapper	658088.HMPREF0987_00529	RecT family	NA
UHGV-0075764_14	Pfam	PF03837	RecT family	RecT
UHGV-0075764_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0075764_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0075764_14	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0075764_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0075764_15	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0075764_15	UniRef90	UniRef90_UPI001C01AEC7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0075764_15	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0075764_15	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0075764_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0075764_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0075764_16	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0075764_16	UniRef90	UniRef90_UPI001C030B8A	NA	NA
UHGV-0075764_16	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0075764_16	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0075764_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0075764_16	Structural annotation	PF14297	NA	NA
UHGV-0075764_17	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0075764_17	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0075764_17	UniRef90	UniRef90_UPI00156FBCEE	ORF6C domain-containing protein	NA
UHGV-0075764_17	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0075764_17	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0075764_17	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0075764_17	COG	COG3617	Prophage antirepressor	NA
UHGV-0075764_17	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0075764_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0075764_18	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0075764_18	UniRef90	UniRef90_UPI001C029164	DNA cytosine methyltransferase	NA
UHGV-0075764_18	eggNOG-mapper	742741.HMPREF9475_00411	C-5 cytosine-specific DNA methylase	NA
UHGV-0075764_18	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-0075764_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0075764_18	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0075764_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0075764_18	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0075764_19	PHROG	phrog_9300	NA	unknown function
UHGV-0075764_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0075764_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0075764_20	UniRef90	UniRef90_UPI001C026824	single-stranded DNA-binding protein	NA
UHGV-0075764_20	eggNOG-mapper	658088.HMPREF0987_02000	Single-strand binding protein family	NA
UHGV-0075764_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0075764_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0075764_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0075764_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0075764_20	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0075764_21	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0075764_21	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0075764_21	UniRef90	UniRef90_UPI001C01D594	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0075764_21	eggNOG-mapper	742765.HMPREF9457_03403	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0075764_21	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0075764_21	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0075764_21	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0075764_22	UniRef90	UniRef90_R7NA70	Putative long-chain-fatty-acid-CoA ligase	NA
UHGV-0075764_22	eggNOG-mapper	411470.RUMGNA_02041	NA	NA
UHGV-0075764_25	UniRef90	UniRef90_A0A412ELZ1	NA	NA
UHGV-0075764_25	Pfam	PF19789	NA	DUF6273
UHGV-0075764_25	Structural annotation	PF19789	NA	NA
UHGV-0075764_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0075764_27	UniRef90	UniRef90_A0A3A9HG24	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0075764_27	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0075764_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0075764_27	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0075764_28	PHROG	phrog_2412	NA	unknown function
UHGV-0075764_28	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0075764_28	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0075764_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0075764_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0075764_29	UniRef90	UniRef90_UPI00156FDA8C	terminase family protein	NA
UHGV-0075764_29	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-0075764_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0075764_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0075764_29	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0075764_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0075764_30	UniRef90	UniRef90_UPI00156ECCAD	phage capsid protein	NA
UHGV-0075764_30	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0075764_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0075764_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0075764_31	UniRef90	UniRef90_UPI001570CBC5	phage minor capsid protein	NA
UHGV-0075764_31	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0075764_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0075764_31	COG	COG2369	NA	NA
UHGV-0075764_31	Structural annotation	PF06152, PF15887, TIGR01641, COG4307	NA	NA
UHGV-0075764_33	PHROG	phrog_21498	NA	unknown function
UHGV-0075764_33	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0075764_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0075764_33	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0075764_34	PHROG	phrog_13199	NA	unknown function
UHGV-0075764_34	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0075764_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0075764_35	UniRef90	UniRef90_K1ST28	Phage minor structural protein (Fragment)	NA
UHGV-0075764_35	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0075764_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0075764_35	Structural annotation	PF06810	NA	NA
UHGV-0075764_36	PHROG	phrog_422	major head protein	head and packaging
UHGV-0075764_36	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0075764_36	eggNOG-mapper	679192.HMPREF9013_1301	NA	NA
UHGV-0075764_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0075764_37	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0075764_38	PHROG	phrog_3366	NA	unknown function
UHGV-0075764_38	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0075764_38	Pfam	PF20536	NA	DUF6751
UHGV-0075764_38	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0075764_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0075764_39	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0075764_39	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0075764_40	PHROG	phrog_3266	tail completion	connector
UHGV-0075764_40	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0075764_40	Structural annotation	PF12691	NA	NA
UHGV-0075764_41	PHROG	phrog_3099	NA	unknown function
UHGV-0075764_41	eggNOG-mapper	742765.HMPREF9457_02132	NA	NA
UHGV-0075764_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0075764_42	PHROG	phrog_706	NA	unknown function
UHGV-0075764_42	UniRef90	UniRef90_A0A1C5QVP1	Bacteriophage Gp15 protein	NA
UHGV-0075764_42	eggNOG-mapper	1235792.C808_05375	COG NOG24969 non supervised orthologous group	NA
UHGV-0075764_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0075764_42	Structural annotation	PF06854	NA	NA
UHGV-0075764_43	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0075764_43	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0075764_43	UniRef90	UniRef90_A0A1C5QW36	Phage-related protein	NA
UHGV-0075764_43	eggNOG-mapper	693746.OBV_25080	Phage-related minor tail protein	NA
UHGV-0075764_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0075764_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0075764_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0075764_43	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280, COG3853	NA	NA
UHGV-0075764_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0075764_44	UniRef90	UniRef90_A0A1C5QVY7	Phage-related protein	NA
UHGV-0075764_44	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0075764_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0075764_44	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-0075764_45	PHROG	phrog_3558	tail protein	tail
UHGV-0075764_45	UniRef90	UniRef90_A0A1C5QW63	Phage minor structural protein, N-terminal region	NA
UHGV-0075764_45	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0075764_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0075764_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0075764_45	COG	COG4926	Phage-related protein	NA
UHGV-0075764_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0075764_46	PHROG	phrog_38190	NA	unknown function
UHGV-0075764_46	UniRef90	UniRef90_UPI001960CF5B	head fiber protein	NA
UHGV-0075764_46	eggNOG-mapper	742733.HMPREF9469_01803	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0075764_46	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0075764_47	UniRef90	UniRef90_B6WRR9	Phage Tail Collar Domain protein (Fragment)	NA
UHGV-0075764_47	eggNOG-mapper	1408428.JNJP01000079_gene3365	Phage tail-collar fibre protein	NA
UHGV-0075764_47	COG	COG4675	Phage tail collar domain	NA
UHGV-0075764_49	PHROG	phrog_199	holin	lysis
UHGV-0075764_49	UniRef90	UniRef90_A0A3D4RB03	Holin	NA
UHGV-0075764_49	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0075764_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0075764_49	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0075764_49	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0075764_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0075764_50	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0075764_50	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0075764_50	UniRef90	UniRef90_UPI0015707BA1	phage antirepressor KilAC domain-containing protein	NA
UHGV-0075764_50	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0075764_50	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0075764_50	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0075764_50	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0075764_50	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0075764_51	UniRef90	UniRef90_K1U6U8	Protein phosphatase 1 regulatory subunit 14A	NA
UHGV-0075764_51	eggNOG-mapper	478749.BRYFOR_07649	NA	NA
UHGV-0075764_51	AcrCatalog	cluster_13845	NA	NA
UHGV-0075764_52	UniRef90	UniRef90_A0A8J8ME07	CopG family transcriptional regulator	NA
UHGV-0075764_52	eggNOG-mapper	1235802.C823_04889	NA	NA
UHGV-0075764_53	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0075764_53	PHROG	phrog_1794	amidase	lysis
UHGV-0075764_53	UniRef90	UniRef90_A0A1C5QWL7	N-acetylmuramoyl-L-alanine amidase AmiD	NA
UHGV-0075764_53	eggNOG-mapper	411470.RUMGNA_02087	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0075764_53	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0075764_53	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075764_53	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA