UHGV-0075802

Genome information

vOTU vOTU-019921

Genome length 23,433 bps

CDS count 41

Completeness 57.02% (medium-quality)

geNomad score 0.9826

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075802
vOTU ID	vOTU-019921
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_137517
BioSample	SAMEA2737774
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9826
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.35
Jumbo phage	No

Genome content
Genome length	23,433 bps
GC content	53.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	91.59%
Average CDS length	528.15 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075802_1	Structural annotation	PF18152	NA	NA
UHGV-0075802_3	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0075802_3	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0075802_3	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0075802_3	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0075802_3	COG	COG2369	NA	NA
UHGV-0075802_3	Structural annotation	PF06152	NA	NA
UHGV-0075802_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0075802_4	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0075802_4	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0075802_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0075802_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0075802_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0075802_5	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0075802_5	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0075802_5	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0075802_5	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0075802_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0075802_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0075802_5	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0075802_7	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0075802_7	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0075802_7	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0075802_7	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0075802_7	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0075802_7	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0075802_7	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0075802_7	COG	COG0863	DNA modification methylase	NA
UHGV-0075802_7	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0075802_8	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0075802_8	Structural annotation	TIGR01636	NA	NA
UHGV-0075802_11	UniRef90	UniRef90_UPI00082EBC63	Lar family restriction alleviation protein	NA
UHGV-0075802_13	PHROG	phrog_3136	NA	unknown function
UHGV-0075802_13	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0075802_13	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0075802_14	PHROG	phrog_38832	NA	unknown function
UHGV-0075802_14	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0075802_14	Structural annotation	PF10781	NA	NA
UHGV-0075802_17	PHROG	phrog_22529	NA	unknown function
UHGV-0075802_17	UniRef90	UniRef90_A0A810Q1V0	3D domain-containing protein	NA
UHGV-0075802_17	eggNOG-mapper	1410622.JNKY01000010_gene1282	3D domain	NA
UHGV-0075802_17	Pfam	PF06725	3D domain	3D
UHGV-0075802_17	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0075802_17	Structural annotation	PF06725, NF040670, COG3584	NA	NA
UHGV-0075802_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0075802_20	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0075802_20	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0075802_20	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0075802_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0075802_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0075802_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0075802_22	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0075802_22	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0075802_22	UniRef90	UniRef90_UPI001D097961	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0075802_22	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0075802_22	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0075802_22	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0075802_22	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0075802_23	Structural annotation	TIGR00122, COG1654	NA	NA
UHGV-0075802_24	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0075802_24	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0075802_24	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0075802_24	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0075802_24	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0075802_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0075802_24	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0075802_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0075802_25	PHROG	phrog_9804	NA	unknown function
UHGV-0075802_25	UniRef90	UniRef90_UPI0015C5D332	replicative helicase loader/inhibitor	NA
UHGV-0075802_25	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0075802_25	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0075802_25	Structural annotation	PF11417	NA	NA
UHGV-0075802_26	PHROG	phrog_15768	NA	unknown function
UHGV-0075802_26	eggNOG-mapper	1410650.JHWL01000003_gene2848	NA	NA
UHGV-0075802_26	Pfam	PF19808	NA	DUF6291
UHGV-0075802_26	Structural annotation	PF19808	NA	NA
UHGV-0075802_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0075802_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0075802_27	UniRef90	UniRef90_A0A350TKS2	Single-stranded DNA-binding protein	NA
UHGV-0075802_27	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0075802_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0075802_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0075802_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0075802_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0075802_27	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0075802_28	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0075802_28	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0075802_28	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0075802_28	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0075802_28	Pfam	PF03837	RecT family	RecT
UHGV-0075802_28	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0075802_28	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0075802_28	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0075802_29	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075802_29	UniRef90	UniRef90_A0A1C5ZAV2	Putative phage-type endonuclease	NA
UHGV-0075802_29	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0075802_29	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0075802_29	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0075802_29	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0075802_29	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0075802_30	Structural annotation	PF00412	NA	NA
UHGV-0075802_34	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0075802_34	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0075802_35	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0075802_35	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0075802_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0075802_35	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0075802_37	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0075802_37	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0075802_40	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0075802_40	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0075802_41	KOfam	K14059	int; integrase	NA
UHGV-0075802_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0075802_41	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0075802_41	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0075802_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0075802_41	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0075802_41	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA