UHGV-0075808

Genome information

Genome length 22,170 bps

CDS count 39

Completeness 57.19% (medium-quality)

geNomad score 0.9537

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075808
vOTU ID	vOTU-026728
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_117366
BioSample	SAMEA2580162
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9537
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.66
Jumbo phage	No

Genome content
Genome length	22,170 bps
GC content	34.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	89.27%
Average CDS length	511.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075808_1	PHROG	phrog_19315	NA	unknown function
UHGV-0075808_1	UniRef90	UniRef90_UPI0018A895C9	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0075808_1	eggNOG-mapper	1329250.WOSG25_021900	IrrE N-terminal-like domain	NA
UHGV-0075808_1	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0075808_1	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0075808_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0075808_2	UniRef90	UniRef90_UPI001E44307D	helix-turn-helix transcriptional regulator	NA
UHGV-0075808_2	eggNOG-mapper	202752.JL53_03615	Helix-turn-helix XRE-family like proteins	NA
UHGV-0075808_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0075808_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0075808_2	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0075808_3	UniRef90	UniRef90_A0A7X2KVZ7	XRE family transcriptional regulator	NA
UHGV-0075808_3	eggNOG-mapper	1000588.HMPREF9965_1728	NA	NA
UHGV-0075808_3	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-0075808_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0075808_4	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0075808_4	UniRef90	UniRef90_UPI0018AB6AC9	phage antirepressor KilAC domain-containing protein	NA
UHGV-0075808_4	eggNOG-mapper	257314.LJ_1455	BRO family, N-terminal domain	NA
UHGV-0075808_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0075808_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0075808_4	COG	COG3617	Prophage antirepressor	NA
UHGV-0075808_4	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0075808_5	UniRef90	UniRef90_A0A166U0Q9	NA	NA
UHGV-0075808_5	eggNOG-mapper	1229517.AMFD01000025_gene926	NA	NA
UHGV-0075808_11	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0075808_11	UniRef90	UniRef90_UPI0018A909CA	NA	NA
UHGV-0075808_11	eggNOG-mapper	861455.HMPREF9184_01014	NA	NA
UHGV-0075808_11	Pfam	PF13643	NA	DUF4145
UHGV-0075808_11	Structural annotation	COG2250	NA	NA
UHGV-0075808_12	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0075808_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0075808_12	UniRef90	UniRef90_A0A6L2ZXQ2	Recombinase XerC	NA
UHGV-0075808_12	eggNOG-mapper	1231377.C426_1701	Belongs to the 'phage' integrase family	NA
UHGV-0075808_12	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0075808_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0075808_12	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0075808_12	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0075808_13	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0075808_13	UniRef90	UniRef90_A0A7T4THH4	Helix-turn-helix domain-containing protein	NA
UHGV-0075808_13	eggNOG-mapper	1215915.BN193_09195	Helix-turn-helix domain	NA
UHGV-0075808_13	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0075808_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0075808_13	Structural annotation	PF13730, MF_01909, NF040939, COG1846	NA	NA
UHGV-0075808_14	PHROG	phrog_2108	NA	unknown function
UHGV-0075808_15	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0075808_15	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0075808_15	UniRef90	UniRef90_UPI0018A9E098	ATP-binding protein	NA
UHGV-0075808_15	eggNOG-mapper	1231377.C426_1704	Primosomal protein DnaI N-terminus	NA
UHGV-0075808_15	Pfam	PF07319	Primosomal protein DnaI N-terminus	DnaI_N
UHGV-0075808_15	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0075808_15	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0075808_15	Structural annotation	PF01695, MF_00377, NF006505, COG1484	NA	NA
UHGV-0075808_16	PHROG	phrog_3109	NA	unknown function
UHGV-0075808_16	UniRef90	UniRef90_UPI0013FD28A5	NA	NA
UHGV-0075808_16	Pfam	PF06275	NA	DUF1031
UHGV-0075808_17	PHROG	phrog_16590	NA	unknown function
UHGV-0075808_18	PHROG	phrog_16590	NA	unknown function
UHGV-0075808_19	PHROG	phrog_16590	NA	unknown function
UHGV-0075808_19	UniRef90	UniRef90_UPI001BCDAD72	NA	NA
UHGV-0075808_20	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0075808_20	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0075808_20	UniRef90	UniRef90_K2PTY6	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0075808_20	eggNOG-mapper	1231377.C426_1708	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0075808_20	Pfam	PF00692	dUTPase	dUTPase
UHGV-0075808_20	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0075808_20	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0075808_20	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0075808_21	PHROG	phrog_27120	NA	unknown function
UHGV-0075808_22	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0075808_22	UniRef90	UniRef90_S6FHZ7	NA	NA
UHGV-0075808_22	eggNOG-mapper	1229517.AMFD01000018_gene199	NA	NA
UHGV-0075808_23	PHROG	phrog_12855	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0075808_23	UniRef90	UniRef90_A0A7T4NJI3	NA	NA
UHGV-0075808_23	eggNOG-mapper	1123303.AQVD01000001_gene517	NA	NA
UHGV-0075808_23	Pfam	PF05656	NA	DUF805
UHGV-0075808_23	COG	COG3152	NA	NA
UHGV-0075808_24	PHROG	phrog_2198	Alt-like transcription activator	transcription regulation
UHGV-0075808_24	UniRef90	UniRef90_UPI001CE2B3B0	RinA family protein	NA
UHGV-0075808_24	eggNOG-mapper	1229517.AMFD01000023_gene1326	EVIDENCE BY HOMOLOGY BIO14.03 Phage related functions and prophages	NA
UHGV-0075808_24	Pfam	PF05263	NA	DUF722
UHGV-0075808_24	Structural annotation	PF05263, MF_00674, TIGR01636, COG1595	NA	NA
UHGV-0075808_25	UniRef90	UniRef90_R8H0W8	NA	NA
UHGV-0075808_25	eggNOG-mapper	1145276.T479_01600	NA	NA
UHGV-0075808_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0075808_26	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075808_26	UniRef90	UniRef90_A0A6L2ZWV0	HNH endonuclease	NA
UHGV-0075808_26	eggNOG-mapper	1158604.I591_00523	HNH endonuclease	NA
UHGV-0075808_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0075808_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0075808_26	Structural annotation	PF05766	NA	NA
UHGV-0075808_27	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0075808_27	UniRef90	UniRef90_A0A6L2ZW22	Terminase small subunit	NA
UHGV-0075808_27	eggNOG-mapper	565664.EFXG_02663	NA	NA
UHGV-0075808_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0075808_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0075808_28	UniRef90	UniRef90_A0A6L2ZXS3	Terminase	NA
UHGV-0075808_28	eggNOG-mapper	565664.EFXG_02662	Phage Terminase	NA
UHGV-0075808_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0075808_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0075808_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0075808_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0075808_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0075808_29	UniRef90	UniRef90_A0A6L2ZX88	Portal protein	NA
UHGV-0075808_29	eggNOG-mapper	565664.EFXG_02661	Phage portal protein	NA
UHGV-0075808_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0075808_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0075808_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0075808_30	KOfam	K06904	NA	NA
UHGV-0075808_30	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0075808_30	UniRef90	UniRef90_A0A7T4NLV0	HK97 family phage prohead protease	NA
UHGV-0075808_30	eggNOG-mapper	1201292.DR75_1639	Caudovirus prohead serine protease	NA
UHGV-0075808_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0075808_30	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0075808_30	COG	COG3740	Phage head maturation protease	NA
UHGV-0075808_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0075808_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0075808_31	UniRef90	UniRef90_A0A6L2ZW17	Primosomal replication protein N	NA
UHGV-0075808_31	eggNOG-mapper	1201292.DR75_1638	Phage capsid family	NA
UHGV-0075808_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0075808_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0075808_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0075808_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0075808_32	PHROG	phrog_4609	NA	unknown function
UHGV-0075808_32	UniRef90	UniRef90_A0A7T4NL49	Phage gp6-like head-tail connector protein	NA
UHGV-0075808_32	eggNOG-mapper	1158604.I591_00530	Phage gp6-like head-tail connector protein	NA
UHGV-0075808_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0075808_32	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0075808_33	PHROG	phrog_4014	head-tail adaptor	connector
UHGV-0075808_33	UniRef90	UniRef90_A0A6L2ZX87	Phage head closure protein	NA
UHGV-0075808_33	eggNOG-mapper	1158604.I591_00531	Phage head-tail joining protein	NA
UHGV-0075808_33	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0075808_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0075808_34	UniRef90	UniRef90_A0A0M2A8L3	NA	NA
UHGV-0075808_34	eggNOG-mapper	226185.EF_2817	NA	NA
UHGV-0075808_34	Structural annotation	PF20765	NA	NA
UHGV-0075808_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0075808_35	UniRef90	UniRef90_A0A7T4NLV5	HK97 gp10 family phage protein	NA
UHGV-0075808_35	eggNOG-mapper	565664.EFXG_02655	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0075808_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0075808_35	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0075808_35	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0075808_36	PHROG	phrog_11502	tail protein	tail
UHGV-0075808_36	UniRef90	UniRef90_A0A6L2ZWW1	Tail protein	NA
UHGV-0075808_36	eggNOG-mapper	226185.EF_2815	NA	NA
UHGV-0075808_36	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0075808_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0075808_37	PHROG	phrog_4888	tail assembly chaperone	tail
UHGV-0075808_37	UniRef90	UniRef90_W7D9N8	NA	NA
UHGV-0075808_37	eggNOG-mapper	1158604.I591_00535	NA	NA
UHGV-0075808_37	Structural annotation	PF11836	NA	NA
UHGV-0075808_38	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0075808_38	UniRef90	UniRef90_A0A6L2ZXA0	Phage tail tape measure protein	NA
UHGV-0075808_38	eggNOG-mapper	1158614.I592_02326	Phage-related minor tail protein	NA
UHGV-0075808_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0075808_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0075808_38	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0075808_38	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0075808_39	UniRef90	UniRef90_UPI001BAFEAD6	phage tail family protein	NA
UHGV-0075808_39	eggNOG-mapper	1158604.I591_00537	phage tail	NA
UHGV-0075808_39	COG	COG4722	Phage-related protein YomH	NA