UHGV-0075859

Genome information

Genome length 32,959 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075859
vOTU ID	vOTU-009988
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_125338
BioSample	SAMEA2737840
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.95
Jumbo phage	No

Genome content
Genome length	32,959 bps
GC content	26.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.11%
Average CDS length	525.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075859_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0075859_1	PHROG	phrog_1493	endolysin	lysis
UHGV-0075859_1	UniRef90	UniRef90_UPI001365900B	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0075859_1	eggNOG-mapper	553973.CLOHYLEM_04450	Ami_2	NA
UHGV-0075859_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0075859_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0075859_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0075859_1	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0075859_2	Structural annotation	PF16938	NA	NA
UHGV-0075859_3	PHROG	phrog_1863	NA	unknown function
UHGV-0075859_3	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0075859_5	PHROG	phrog_1220	head protein	head and packaging
UHGV-0075859_5	eggNOG-mapper	431943.CKL_4054	COG NOG18825 non supervised orthologous group	NA
UHGV-0075859_5	Structural annotation	PF15432, PF20747, NF033675	NA	NA
UHGV-0075859_6	PHROG	phrog_538	minor tail protein	tail
UHGV-0075859_6	UniRef90	UniRef90_UPI001D05F61F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0075859_6	eggNOG-mapper	411468.CLOSCI_00538	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0075859_6	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0075859_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0075859_7	PHROG	phrog_36410	NA	unknown function
UHGV-0075859_7	UniRef90	UniRef90_R6SIV1	Conserved domain protein	NA
UHGV-0075859_7	eggNOG-mapper	411468.CLOSCI_00539	COG NOG18823 non supervised orthologous group	NA
UHGV-0075859_7	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0075859_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0075859_7	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0075859_8	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0075859_8	eggNOG-mapper	411470.RUMGNA_02076	Phage tail tape measure protein, TP901 family	NA
UHGV-0075859_8	COG	COG5283	Phage-related tail protein	NA
UHGV-0075859_8	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0075859_9	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-0075859_10	PHROG	phrog_88	major tail protein	tail
UHGV-0075859_10	UniRef90	UniRef90_A0A075KJR8	Putative major tail protein	NA
UHGV-0075859_10	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-0075859_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0075859_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0075859_11	PHROG	phrog_78	tail terminator	connector
UHGV-0075859_11	eggNOG-mapper	508419.F8J167_9CAUD	NA	NA
UHGV-0075859_11	Structural annotation	PF05657	NA	NA
UHGV-0075859_12	eggNOG-mapper	508419.F8J166_9CAUD	NA	NA
UHGV-0075859_12	Structural annotation	TIGR01725	NA	NA
UHGV-0075859_13	PHROG	phrog_25	head closure Hc1	connector
UHGV-0075859_13	UniRef90	UniRef90_A0A843I196	Phage head closure protein	NA
UHGV-0075859_13	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-0075859_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0075859_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0075859_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0075859_14	UniRef90	UniRef90_UPI001D636178	head-tail connector protein	NA
UHGV-0075859_14	eggNOG-mapper	508419.F8J164_9CAUD	NA	NA
UHGV-0075859_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0075859_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0075859_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0075859_16	UniRef90	UniRef90_A0A3D1WLZ9	Phage major capsid protein	NA
UHGV-0075859_16	eggNOG-mapper	1399942.U3PDR8_9CAUD	peptidase activity	NA
UHGV-0075859_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0075859_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0075859_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0075859_17	KOfam	K06904	NA	NA
UHGV-0075859_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0075859_17	UniRef90	UniRef90_UPI0004B60E4D	HK97 family phage prohead protease	NA
UHGV-0075859_17	eggNOG-mapper	1414720.CBYM010000002_gene573	Phage prohead protease, HK97 family	NA
UHGV-0075859_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0075859_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0075859_17	COG	COG3740	Phage head maturation protease	NA
UHGV-0075859_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0075859_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0075859_18	UniRef90	UniRef90_A0A843HZ12	Phage portal protein	NA
UHGV-0075859_18	eggNOG-mapper	1399942.U3PFW0_9CAUD	Phage portal protein	NA
UHGV-0075859_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0075859_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0075859_18	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0075859_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0075859_19	UniRef90	UniRef90_R7F036	Putative terminase large subunit	NA
UHGV-0075859_19	eggNOG-mapper	1304866.K413DRAFT_1222	Terminase	NA
UHGV-0075859_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0075859_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0075859_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0075859_19	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0075859_20	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0075859_20	UniRef90	UniRef90_R7EZT4	Phage-related protein	NA
UHGV-0075859_20	eggNOG-mapper	903814.ELI_1295	phage terminase small subunit	NA
UHGV-0075859_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0075859_20	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0075859_21	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075859_21	UniRef90	UniRef90_R7EY52	HNHc domain-containing protein	NA
UHGV-0075859_21	eggNOG-mapper	1304866.K413DRAFT_1217	HNH nucleases	NA
UHGV-0075859_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0075859_38	eggNOG-mapper	1297617.JPJD01000020_gene313	NA	NA
UHGV-0075859_41	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0075859_41	PHROG	phrog_216	integrase	integration and excision
UHGV-0075859_41	UniRef90	UniRef90_R7EZA3	Tyr recombinase domain-containing protein	NA
UHGV-0075859_41	eggNOG-mapper	1123298.KB904077_gene454	Integrase	NA
UHGV-0075859_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0075859_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0075859_41	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0075859_42	PHROG	phrog_918	NA	unknown function
UHGV-0075859_42	UniRef90	UniRef90_UPI00115A7D93	NA	NA
UHGV-0075859_42	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-0075859_42	Pfam	PF19791	NA	DUF6275
UHGV-0075859_42	Structural annotation	PF19791	NA	NA
UHGV-0075859_46	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0075859_46	eggNOG-mapper	665950.HMPREF1025_01374	NA	NA
UHGV-0075859_49	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0075859_49	UniRef90	UniRef90_UPI0011CB7084	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0075859_49	eggNOG-mapper	1232447.BAHW02000005_gene152	NA	NA
UHGV-0075859_49	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0075859_50	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0075859_51	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0075859_51	UniRef90	UniRef90_A0A6C2C702	DNA replication protein	NA
UHGV-0075859_51	eggNOG-mapper	762550.LEGAS_1609	DnaD domain protein	NA
UHGV-0075859_51	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0075859_51	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0075859_52	PHROG	phrog_4973	NA	unknown function
UHGV-0075859_52	UniRef90	UniRef90_A0A3R6RL03	DNA-binding protein	NA
UHGV-0075859_52	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0075859_52	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0075859_52	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0075859_54	PHROG	phrog_6058	NA	unknown function
UHGV-0075859_54	UniRef90	UniRef90_A0A101WT85	Modification methylase SinI	NA
UHGV-0075859_54	eggNOG-mapper	1123288.SOV_2c10360	NA	NA
UHGV-0075859_54	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0075859_55	UniRef90	UniRef90_B1BPN1	HTH cro/C1-type domain-containing protein	NA
UHGV-0075859_55	eggNOG-mapper	1064535.MELS_1289	NA	NA
UHGV-0075859_55	Pfam	PF05339	NA	DUF739
UHGV-0075859_55	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0075859_56	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0075859_56	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0075859_56	UniRef90	UniRef90_R7EZW6	LexA repressor	NA
UHGV-0075859_56	eggNOG-mapper	1321820.HMPREF1983_00958	Helix-turn-helix XRE-family like proteins	NA
UHGV-0075859_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075859_56	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0075859_56	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0075859_56	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0075859_58	KOfam	K14059	int; integrase	NA
UHGV-0075859_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0075859_58	UniRef90	UniRef90_UPI00193B6711	site-specific integrase	NA
UHGV-0075859_58	eggNOG-mapper	698758.AXY_01580	Phage integrase family	NA
UHGV-0075859_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0075859_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0075859_58	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA