UHGV-0075881

Genome information

Genome length 37,636 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075881
vOTU ID	vOTU-011056
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_128752
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.28
Jumbo phage	No

Genome content
Genome length	37,636 bps
GC content	27.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	90.73%
Average CDS length	520.18 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075881_1	KOfam	K14059	int; integrase	NA
UHGV-0075881_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0075881_1	UniRef90	UniRef90_A0A1Q6L7V2	Tyr recombinase domain-containing protein	NA
UHGV-0075881_1	eggNOG-mapper	697329.Rumal_2496	Belongs to the 'phage' integrase family	NA
UHGV-0075881_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0075881_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0075881_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0075881_2	PHROG	phrog_87	metallo-protease	other
UHGV-0075881_2	UniRef90	UniRef90_R5PN39	NA	NA
UHGV-0075881_2	eggNOG-mapper	1220589.CD32_16955	Zn peptidase	NA
UHGV-0075881_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0075881_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0075881_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0075881_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0075881_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0075881_3	UniRef90	UniRef90_A0A8E5Y4B1	Helix-turn-helix transcriptional regulator	NA
UHGV-0075881_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075881_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0075881_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0075881_4	UniRef90	UniRef90_UPI00189D0CCD	XRE family transcriptional regulator	NA
UHGV-0075881_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0075881_5	PHROG	phrog_6058	NA	unknown function
UHGV-0075881_5	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0075881_10	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0075881_10	UniRef90	UniRef90_UPI00054290C3	siphovirus Gp157 family protein	NA
UHGV-0075881_10	eggNOG-mapper	632292.Calhy_0748	Siphovirus Gp157	NA
UHGV-0075881_10	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0075881_10	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0075881_11	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0075881_11	UniRef90	UniRef90_A0A7X7HFU7	AAA family ATPase	NA
UHGV-0075881_11	eggNOG-mapper	1329516.JPST01000033_gene2854	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0075881_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0075881_11	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0075881_11	Structural annotation	PF13479, MF_00348, TIGR01618, COG0468	NA	NA
UHGV-0075881_12	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0075881_12	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0075881_12	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0075881_13	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075881_13	UniRef90	UniRef90_R7IWH8	HNHc domain-containing protein	NA
UHGV-0075881_13	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0075881_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0075881_14	UniRef90	UniRef90_G3MAW6	Gp586	NA
UHGV-0075881_15	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0075881_15	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0075881_15	eggNOG-mapper	1567011.A0A0A7S128_9VIRU	calcium ion binding	NA
UHGV-0075881_15	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0075881_15	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0075881_15	Structural annotation	PF07120, COG3756	NA	NA
UHGV-0075881_16	Structural annotation	PF11417	NA	NA
UHGV-0075881_17	PHROG	phrog_1123	NA	unknown function
UHGV-0075881_17	UniRef90	UniRef90_A0A7U3NJT7	Putative transcriptional regulator	NA
UHGV-0075881_17	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0075881_17	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-0075881_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0075881_19	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0075881_19	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0075881_19	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0075881_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0075881_19	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0075881_20	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0075881_20	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0075881_20	UniRef90	UniRef90_UPI001BA5F7AD	site-specific DNA-methyltransferase	NA
UHGV-0075881_20	eggNOG-mapper	1123298.KB904077_gene447	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0075881_20	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0075881_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0075881_20	COG	COG0863	DNA modification methylase	NA
UHGV-0075881_20	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0075881_30	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0075881_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0075881_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0075881_34	UniRef90	UniRef90_R6HDV5	Prophage LambdaCh01 terminase small subunit	NA
UHGV-0075881_34	eggNOG-mapper	246194.CHY_1681	terminase, small subunit	NA
UHGV-0075881_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0075881_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0075881_34	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0075881_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0075881_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0075881_35	UniRef90	UniRef90_R6H5U4	Phage terminase large subunit PBSX family	NA
UHGV-0075881_35	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-0075881_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0075881_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0075881_35	Structural annotation	PF04466, MF_04145, NF002340, COG5410	NA	NA
UHGV-0075881_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0075881_36	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0075881_36	UniRef90	UniRef90_R6HF73	Phage terminase large subunit PBSX family	NA
UHGV-0075881_36	eggNOG-mapper	1408823.AXUS01000024_gene2712	Phage terminase, large subunit, PBSX family	NA
UHGV-0075881_36	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0075881_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0075881_36	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0075881_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-0075881_37	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-0075881_37	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0075881_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0075881_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0075881_39	UniRef90	UniRef90_R7IWF4	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-0075881_40	eggNOG-mapper	272626.lin1730	Phage Mu protein F like protein	NA
UHGV-0075881_40	COG	COG2369	NA	NA
UHGV-0075881_43	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0075881_43	UniRef90	UniRef90_A0A3D1PKZ2	Phage capsid protein	NA
UHGV-0075881_43	eggNOG-mapper	1235800.C819_00486	NA	NA
UHGV-0075881_43	Pfam	PF14265	NA	DUF4355
UHGV-0075881_43	Structural annotation	PF14265	NA	NA
UHGV-0075881_44	UniRef90	UniRef90_A0A3D1PN29	S-l_SbsC_C domain-containing protein	NA
UHGV-0075881_44	eggNOG-mapper	86416.Clopa_0341	Phage capsid family	NA
UHGV-0075881_44	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0075881_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0075881_44	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0075881_45	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0075881_46	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0075881_49	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-0075881_49	Structural annotation	PF05657	NA	NA
UHGV-0075881_50	eggNOG-mapper	445972.ANACOL_01851	NA	NA
UHGV-0075881_50	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0075881_51	Structural annotation	PF12363	NA	NA
UHGV-0075881_53	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0075881_54	UniRef90	UniRef90_A0A7X9XQD0	NA	NA
UHGV-0075881_54	eggNOG-mapper	1292035.H476_2311	Short C-terminal domain	NA
UHGV-0075881_54	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0075881_56	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0075881_56	UniRef90	UniRef90_R6H5W8	Phage-related protein-like protein	NA
UHGV-0075881_56	eggNOG-mapper	86416.Clopa_0587	phage tail tape measure protein	NA
UHGV-0075881_56	COG	COG1511	NA	NA
UHGV-0075881_57	PHROG	phrog_1194	NA	unknown function
UHGV-0075881_57	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0075881_58	PHROG	phrog_6616	tail protein	tail
UHGV-0075881_58	eggNOG-mapper	1414720.CBYM010000002_gene560	Phage minor structural protein	NA
UHGV-0075881_58	COG	COG4926	Phage-related protein	NA
UHGV-0075881_58	Structural annotation	PF01105, PF04862, NF033848, TIGR04362	NA	NA
UHGV-0075881_59	PHROG	phrog_372	tail protein	tail
UHGV-0075881_59	UniRef90	UniRef90_UPI0019610394	NA	NA
UHGV-0075881_59	eggNOG-mapper	1211844.CBLM010000016_gene1479	NA	NA
UHGV-0075881_59	Pfam	PF05895	NA	DUF859
UHGV-0075881_59	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-0075881_60	Structural annotation	PF07041	NA	NA
UHGV-0075881_61	eggNOG-mapper	397290.C810_03256	NA	NA
UHGV-0075881_62	Structural annotation	PF16938	NA	NA
UHGV-0075881_63	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0075881_63	PHROG	phrog_9611	endolysin	lysis
UHGV-0075881_63	UniRef90	UniRef90_R6H5X6	N-acetylmuramyl-L-alanine amidase negative regulator of AmpC AmpD	NA
UHGV-0075881_63	eggNOG-mapper	642492.Clole_0841	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0075881_63	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0075881_63	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0075881_63	Structural annotation	PF01510, PF20780, MF_04111, NF008758, COG5632	NA	NA
UHGV-0075881_64	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075881_64	UniRef90	UniRef90_UPI001D10AAAA	AP2 domain-containing protein	NA
UHGV-0075881_64	eggNOG-mapper	1434319.W5RV26_9CAUD	NA	NA
UHGV-0075881_65	UniRef90	UniRef90_R6I264	HTH cro/C1-type domain-containing protein	NA
UHGV-0075881_65	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0075881_65	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0075881_65	Structural annotation	PF01381, NF010465, COG1476	NA	NA