UHGV-0075895

Genome information

vOTU vOTU-019471

Genome length 17,784 bps

CDS count 33

Completeness 50.90% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0075895
vOTU ID	vOTU-019471
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_109189
BioSample	SAMEA2580273
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.69
Jumbo phage	No

Genome content
Genome length	17,784 bps
GC content	42.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	91.67%
Average CDS length	499.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0075895_1	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0075895_1	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0075895_1	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0075895_1	COG	COG2369	NA	NA
UHGV-0075895_2	PHROG	phrog_533	portal protein	head and packaging
UHGV-0075895_2	UniRef90	UniRef90_A0A3E4LXF1	Phage portal protein	NA
UHGV-0075895_2	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0075895_2	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0075895_2	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0075895_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0075895_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0075895_3	UniRef90	UniRef90_A0A3E4LWZ3	PBSX family phage terminase large subunit	NA
UHGV-0075895_3	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0075895_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0075895_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0075895_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0075895_3	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0075895_4	PHROG	phrog_2412	NA	unknown function
UHGV-0075895_4	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0075895_4	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0075895_5	PHROG	phrog_21498	NA	unknown function
UHGV-0075895_5	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0075895_5	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0075895_5	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0075895_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0075895_6	UniRef90	UniRef90_A0A415D8G2	Sigma70_r4 domain-containing protein	NA
UHGV-0075895_6	eggNOG-mapper	33035.JPJF01000107_gene434	Sigma-70, region 4	NA
UHGV-0075895_6	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0075895_6	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0075895_7	PHROG	phrog_7024	NA	unknown function
UHGV-0075895_7	eggNOG-mapper	1235802.C823_01504	NA	NA
UHGV-0075895_11	eggNOG-mapper	568816.Acin_1246	NA	NA
UHGV-0075895_13	PHROG	phrog_874	NA	unknown function
UHGV-0075895_13	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0075895_13	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0075895_15	PHROG	phrog_20593	NA	unknown function
UHGV-0075895_15	UniRef90	UniRef90_UPI001C00E342	NA	NA
UHGV-0075895_15	AcrCatalog	cluster_27421	NA	NA
UHGV-0075895_16	PHROG	phrog_10714	NA	unknown function
UHGV-0075895_16	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0075895_17	PHROG	phrog_15198	NA	unknown function
UHGV-0075895_17	UniRef90	UniRef90_UPI001D046CFA	NA	NA
UHGV-0075895_17	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0075895_17	Pfam	PF04448	NA	DUF551
UHGV-0075895_19	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0075895_19	UniRef90	UniRef90_UPI001D03B79A	NA	NA
UHGV-0075895_19	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0075895_19	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0075895_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0075895_19	Structural annotation	PF14297	NA	NA
UHGV-0075895_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0075895_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0075895_20	UniRef90	UniRef90_UPI001D0408BC	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0075895_20	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0075895_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0075895_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0075895_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0075895_21	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0075895_21	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0075895_21	UniRef90	UniRef90_UPI001D03FA20	recombinase RecT	NA
UHGV-0075895_21	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0075895_21	Pfam	PF03837	RecT family	RecT
UHGV-0075895_21	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0075895_21	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0075895_21	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0075895_22	PHROG	phrog_674	NA	unknown function
UHGV-0075895_22	UniRef90	UniRef90_UPI001D039BFB	NA	NA
UHGV-0075895_22	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0075895_22	Pfam	PF07083	NA	DUF1351
UHGV-0075895_22	Structural annotation	PF07083	NA	NA
UHGV-0075895_23	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0075895_23	UniRef90	UniRef90_UPI001D0490EC	YqaJ viral recombinase family protein	NA
UHGV-0075895_23	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-0075895_23	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0075895_23	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0075895_23	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0075895_23	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0075895_25	UniRef90	UniRef90_A0A3E4LWT8	HTH psq-type domain-containing protein	NA
UHGV-0075895_25	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-0075895_25	Structural annotation	PF21291, MF_00535, NF007257, COG3655	NA	NA
UHGV-0075895_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0075895_27	UniRef90	UniRef90_A0A373MWF5	XRE family transcriptional regulator	NA
UHGV-0075895_27	eggNOG-mapper	1536772.R70723_06540	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0075895_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075895_27	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0075895_28	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0075895_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0075895_28	UniRef90	UniRef90_A0A373MWG9	XRE family transcriptional regulator	NA
UHGV-0075895_28	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0075895_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0075895_28	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0075895_28	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0075895_29	PHROG	phrog_87	metallo-protease	other
UHGV-0075895_29	UniRef90	UniRef90_A0A412EXS7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0075895_29	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0075895_29	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0075895_29	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0075895_29	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0075895_31	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0075895_31	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0075895_31	UniRef90	UniRef90_A0A414P9D1	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0075895_31	eggNOG-mapper	1120998.AUFC01000028_gene2410	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0075895_31	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0075895_31	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0075895_31	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0075895_32	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0075895_32	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0075895_32	UniRef90	UniRef90_A0A414P9D9	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0075895_32	eggNOG-mapper	97139.C824_05961	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0075895_32	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0075895_32	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0075895_32	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0075895_33	KOfam	K14059	int; integrase	NA
UHGV-0075895_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0075895_33	UniRef90	UniRef90_A0A3E4LWT3	Site-specific integrase	NA
UHGV-0075895_33	eggNOG-mapper	610130.Closa_1360	Belongs to the 'phage' integrase family	NA
UHGV-0075895_33	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0075895_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0075895_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0075895_33	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA