UHGV-0076087

Genome information

Genome length 41,753 bps

CDS count 57

Completeness 96.07% (high-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076087
vOTU ID	vOTU-059742
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_121069
BioSample	SAMEA2580260
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.07% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.43
Jumbo phage	No

Genome content
Genome length	41,753 bps
GC content	42.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.50%
Average CDS length	690.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076087_1	eggNOG-mapper	394503.Ccel_2974	NA	NA
UHGV-0076087_2	UniRef90	UniRef90_UPI000482B8EB	SAP domain-containing protein	NA
UHGV-0076087_2	eggNOG-mapper	1230341.MJ3_13444	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0076087_2	Pfam	PF02037	SAP domain	SAP
UHGV-0076087_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0076087_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076087_3	UniRef90	UniRef90_A0A416MNC0	XRE family transcriptional regulator	NA
UHGV-0076087_3	eggNOG-mapper	1235792.C808_00647	Helix-turn-helix XRE-family like proteins	NA
UHGV-0076087_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076087_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076087_3	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0076087_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0076087_11	eggNOG-mapper	411470.RUMGNA_00203	COG NOG14934 non supervised orthologous group	NA
UHGV-0076087_13	UniRef90	UniRef90_UPI0003F6328F	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0076087_13	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0076087_14	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0076087_15	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0076087_16	PHROG	phrog_4433	NA	unknown function
UHGV-0076087_16	eggNOG-mapper	665956.HMPREF1032_03097	regulation of DNA-templated transcription, elongation	NA
UHGV-0076087_16	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0076087_17	PHROG	phrog_8470	NA	unknown function
UHGV-0076087_17	UniRef90	UniRef90_UPI001158FAD9	PcfJ domain-containing protein	NA
UHGV-0076087_17	eggNOG-mapper	411902.CLOBOL_05697	PcfJ-like protein	NA
UHGV-0076087_17	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0076087_17	Structural annotation	PF14284	NA	NA
UHGV-0076087_18	PHROG	phrog_15077	NA	unknown function
UHGV-0076087_18	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0076087_18	eggNOG-mapper	411902.CLOBOL_05696	NA	NA
UHGV-0076087_18	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0076087_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076087_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076087_19	UniRef90	UniRef90_A0A176U568	Single-stranded DNA-binding protein	NA
UHGV-0076087_19	eggNOG-mapper	742740.HMPREF9474_02547	Single-stranded DNA-binding protein	NA
UHGV-0076087_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076087_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076087_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076087_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076087_19	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0076087_21	PHROG	phrog_7566	NA	unknown function
UHGV-0076087_21	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0076087_22	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0076087_22	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0076087_22	UniRef90	UniRef90_A0A4R5HDS4	Ribonuclease H	NA
UHGV-0076087_22	eggNOG-mapper	439496.RBY4I_1007	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0076087_22	Pfam	PF00075	RNase H	RNase_H
UHGV-0076087_22	COG	COG0328	Ribonuclease HI	NA
UHGV-0076087_22	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0076087_25	eggNOG-mapper	1408312.JNJS01000002_gene68	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0076087_25	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0076087_25	Structural annotation	PF05225, NF040595	NA	NA
UHGV-0076087_26	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0076087_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0076087_26	UniRef90	UniRef90_A0A373PZR0	Integrase	NA
UHGV-0076087_26	eggNOG-mapper	1378168.N510_01742	Belongs to the 'phage' integrase family	NA
UHGV-0076087_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076087_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076087_26	Structural annotation	PF00589, MF_02055, NF040815, COG4974	NA	NA
UHGV-0076087_27	PHROG	phrog_5696	NA	unknown function
UHGV-0076087_27	eggNOG-mapper	665956.HMPREF1032_03099	N-6 DNA Methylase	NA
UHGV-0076087_27	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0076087_28	PHROG	phrog_5696	NA	unknown function
UHGV-0076087_28	UniRef90	UniRef90_A0A013VF17	Restriction endonuclease subunit M	NA
UHGV-0076087_28	eggNOG-mapper	1245471.PCA10_p0930	N-6 DNA Methylase	NA
UHGV-0076087_28	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0076087_30	eggNOG-mapper	658655.HMPREF0988_00866	NA	NA
UHGV-0076087_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076087_31	UniRef90	UniRef90_A0A416MN03	Sigma70_r4 domain-containing protein	NA
UHGV-0076087_31	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0076087_31	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0076087_32	Structural annotation	PF04381, MF_00194, NF001460, COG2974	NA	NA
UHGV-0076087_33	UniRef90	UniRef90_UPI00164A4990	restriction endonuclease	NA
UHGV-0076087_33	Structural annotation	PF19363, PF04471, COG1787, COG3355	NA	NA
UHGV-0076087_34	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0076087_34	UniRef90	UniRef90_A0A3D3U9Y4	Terminase	NA
UHGV-0076087_34	eggNOG-mapper	1449050.JNLE01000003_gene3896	DNA packaging	NA
UHGV-0076087_34	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0076087_34	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0076087_34	COG	COG5484	NA	NA
UHGV-0076087_34	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0076087_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076087_35	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0076087_35	UniRef90	UniRef90_A0A7G5MSQ6	PBSX family phage terminase large subunit	NA
UHGV-0076087_35	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-0076087_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0076087_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076087_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076087_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0076087_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-0076087_36	UniRef90	UniRef90_A0A174L8Y1	Phage portal protein, putative, A118 family	NA
UHGV-0076087_36	eggNOG-mapper	1235799.C818_04218	NA	NA
UHGV-0076087_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0076087_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0076087_37	UniRef90	UniRef90_A0A3D3U8R6	Minor capsid protein	NA
UHGV-0076087_37	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0076087_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0076087_37	COG	COG2369	NA	NA
UHGV-0076087_37	Structural annotation	PF06152	NA	NA
UHGV-0076087_38	PHROG	phrog_15041	NA	unknown function
UHGV-0076087_38	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0076087_38	Structural annotation	PF10827	NA	NA
UHGV-0076087_39	PHROG	phrog_1048	NA	unknown function
UHGV-0076087_39	UniRef90	UniRef90_A0A396NPG3	NA	NA
UHGV-0076087_39	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0076087_39	Pfam	PF11195	NA	DUF2829
UHGV-0076087_39	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0076087_39	Structural annotation	PF11195	NA	NA
UHGV-0076087_40	PHROG	phrog_918	NA	unknown function
UHGV-0076087_40	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0076087_40	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0076087_40	Pfam	PF19791	NA	DUF6275
UHGV-0076087_40	Structural annotation	PF19791	NA	NA
UHGV-0076087_42	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0076087_42	UniRef90	UniRef90_UPI001319F292	phage scaffolding protein	NA
UHGV-0076087_42	eggNOG-mapper	33035.JPJF01000030_gene2293	PFAM Phage minor structural	NA
UHGV-0076087_42	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0076087_43	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-0076087_43	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0076087_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0076087_44	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-0076087_45	PHROG	phrog_3366	NA	unknown function
UHGV-0076087_45	Structural annotation	PF20536	NA	NA
UHGV-0076087_46	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0076087_46	UniRef90	UniRef90_UPI001C3B04D8	Minor capsid protein	NA
UHGV-0076087_46	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0076087_46	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0076087_46	Structural annotation	PF11114	NA	NA
UHGV-0076087_47	PHROG	phrog_3266	tail completion	connector
UHGV-0076087_47	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0076087_47	Structural annotation	PF12691	NA	NA
UHGV-0076087_48	PHROG	phrog_820	major tail protein	tail
UHGV-0076087_48	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0076087_48	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0076087_48	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0076087_50	PHROG	phrog_706	NA	unknown function
UHGV-0076087_50	UniRef90	UniRef90_A0A1M6B1I0	Bacteriophage Gp15 protein	NA
UHGV-0076087_50	eggNOG-mapper	573061.Clocel_3534	Bacteriophage Gp15 protein	NA
UHGV-0076087_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0076087_50	Structural annotation	PF06854	NA	NA
UHGV-0076087_51	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0076087_51	eggNOG-mapper	411483.FAEPRAA2165_01911	Phage tail tape measure protein, TP901 family	NA
UHGV-0076087_51	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0076087_51	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0076087_51	COG	COG5283	Phage-related tail protein	NA
UHGV-0076087_51	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0076087_52	UniRef90	UniRef90_A0A416L6F4	MtfA protein	NA
UHGV-0076087_52	eggNOG-mapper	1235799.C818_04232	phage tail	NA
UHGV-0076087_52	COG	COG4722	Phage-related protein YomH	NA
UHGV-0076087_52	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0076087_53	PHROG	phrog_3558	tail protein	tail
UHGV-0076087_53	UniRef90	UniRef90_A8SKQ2	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0076087_53	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0076087_53	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0076087_53	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0076087_53	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0076087_53	COG	COG4926	Phage-related protein	NA
UHGV-0076087_53	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0076087_54	UniRef90	UniRef90_A0A3D3UB27	BppU_N domain-containing protein	NA
UHGV-0076087_54	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0076087_54	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0076087_56	PHROG	phrog_199	holin	lysis
UHGV-0076087_56	UniRef90	UniRef90_A0A3D3UA08	Holin	NA
UHGV-0076087_56	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0076087_56	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0076087_56	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0076087_56	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0076087_57	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0076087_57	PHROG	phrog_435	endolysin	lysis
UHGV-0076087_57	UniRef90	UniRef90_A0A416MN83	MurNAc-LAA domain-containing protein	NA
UHGV-0076087_57	eggNOG-mapper	1408437.JNJN01000039_gene391	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0076087_57	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0076087_57	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0076087_57	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076087_57	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA