UHGV-0076106

Genome information

vOTU vOTU-031913

Genome length 21,023 bps

CDS count 34

Completeness 57.52% (medium-quality)

geNomad score 0.9599

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076106
vOTU ID	vOTU-031913
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_105654
BioSample	NA
Country	Australia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9599
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.61
Jumbo phage	No

Genome content
Genome length	21,023 bps
GC content	35.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	91.22%
Average CDS length	565.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076106_1	PHROG	phrog_25593	NA	unknown function
UHGV-0076106_1	UniRef90	UniRef90_UPI001EE966E6	transposase	NA
UHGV-0076106_1	eggNOG-mapper	1504823.CCMM01000011_gene1569	transposition, DNA-mediated	NA
UHGV-0076106_1	Pfam	PF12760	Transposase zinc-ribbon domain	Zn_Tnp_IS1595
UHGV-0076106_1	COG	COG3677	Transposase InsA	NA
UHGV-0076106_2	KOfam	K15640	K15640, phoE; uncharacterized phosphatase	NA
UHGV-0076106_2	PHROG	phrog_12933	NA	unknown function
UHGV-0076106_2	UniRef90	UniRef90_R7GKM9	Phosphoglycerate mutase family protein	NA
UHGV-0076106_2	eggNOG-mapper	1504823.CCMM01000013_gene2804	alpha-ribazole phosphatase activity	NA
UHGV-0076106_2	Pfam	PF00300	Histidine phosphatase superfamily (branch 1)	His_Phos_1
UHGV-0076106_2	COG	COG0406	Broad specificity phosphatase PhoE	NA
UHGV-0076106_2	Structural annotation	PF00300, MF_01040, NF009994, COG0406	NA	NA
UHGV-0076106_3	KOfam	K14059	int; integrase	NA
UHGV-0076106_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0076106_3	UniRef90	UniRef90_E2NR65	Site-specific recombinase, phage integrase family	NA
UHGV-0076106_3	eggNOG-mapper	1504823.CCMM01000008_gene1083	DNA integration	NA
UHGV-0076106_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076106_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076106_3	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0076106_4	PHROG	phrog_13160	NA	unknown function
UHGV-0076106_4	UniRef90	UniRef90_UPI001C381EC6	Ig-like domain-containing protein	NA
UHGV-0076106_4	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0076106_4	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0076106_4	Structural annotation	PF13028	NA	NA
UHGV-0076106_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076106_5	UniRef90	UniRef90_UPI001C38C99F	helix-turn-helix domain-containing protein	NA
UHGV-0076106_5	eggNOG-mapper	1078085.HMPREF1210_01183	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0076106_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076106_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0076106_5	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0076106_6	UniRef90	UniRef90_UPI001C386214	helix-turn-helix domain-containing protein	NA
UHGV-0076106_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076106_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0076106_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0076106_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0076106_8	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0076106_8	UniRef90	UniRef90_A0A6N9L4S6	Bro-N domain-containing protein	NA
UHGV-0076106_8	eggNOG-mapper	1423758.BN55_09165	BRO family, N-terminal domain	NA
UHGV-0076106_8	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0076106_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0076106_8	COG	COG3617	Prophage antirepressor	NA
UHGV-0076106_8	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0076106_9	UniRef90	UniRef90_A0A415XFB8	DNA-binding protein	NA
UHGV-0076106_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0076106_9	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0076106_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076106_13	UniRef90	UniRef90_A0A6N9L4Y3	Recombinase	NA
UHGV-0076106_13	eggNOG-mapper	888055.HMPREF9015_01894	YqaJ viral recombinase family	NA
UHGV-0076106_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0076106_13	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0076106_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0076106_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0076106_14	PHROG	phrog_674	NA	unknown function
UHGV-0076106_14	UniRef90	UniRef90_A0A6N9L4W2	NA	NA
UHGV-0076106_14	eggNOG-mapper	1234679.BN424_3317	NA	NA
UHGV-0076106_14	Pfam	PF07083	NA	DUF1351
UHGV-0076106_14	Structural annotation	PF07083	NA	NA
UHGV-0076106_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0076106_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0076106_15	UniRef90	UniRef90_A0A6N9L4X4	Recombinase	NA
UHGV-0076106_15	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0076106_15	Pfam	PF03837	RecT family	RecT
UHGV-0076106_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0076106_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0076106_15	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0076106_16	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0076106_16	UniRef90	UniRef90_UPI001C395B09	winged helix-turn-helix transcriptional regulator	NA
UHGV-0076106_16	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0076106_16	Structural annotation	PF09681, NF033788, COG0640	NA	NA
UHGV-0076106_17	eggNOG-mapper	1232446.BAIE02000041_gene2433	NA	NA
UHGV-0076106_20	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0076106_20	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0076106_20	Structural annotation	NF001613, COG1694	NA	NA
UHGV-0076106_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076106_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076106_23	UniRef90	UniRef90_A0A6N9L4V1	Single-stranded DNA-binding protein	NA
UHGV-0076106_23	eggNOG-mapper	428126.CLOSPI_02450	COG COG0629 Single-stranded DNA-binding protein	NA
UHGV-0076106_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076106_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076106_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076106_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076106_23	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0076106_24	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076106_24	UniRef90	UniRef90_A0A6N9L4W3	NA	NA
UHGV-0076106_24	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0076106_24	Pfam	PF06356	NA	DUF1064
UHGV-0076106_24	Structural annotation	PF06356	NA	NA
UHGV-0076106_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076106_27	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0076106_27	Pfam	PF07374	NA	DUF1492
UHGV-0076106_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0076106_27	Structural annotation	PF08281, MF_00674, NF007227, COG1191	NA	NA
UHGV-0076106_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0076106_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0076106_28	UniRef90	UniRef90_A0A6N9L4V4	Terminase small subunit	NA
UHGV-0076106_28	eggNOG-mapper	1504823.CCMM01000008_gene1049	DNA packaging	NA
UHGV-0076106_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0076106_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0076106_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0076106_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076106_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0076106_29	UniRef90	UniRef90_E2NR92	Phage terminase, large subunit, PBSX family	NA
UHGV-0076106_29	eggNOG-mapper	1504823.CCMM01000008_gene1048	DNA packaging	NA
UHGV-0076106_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0076106_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0076106_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076106_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076106_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0076106_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0076106_30	UniRef90	UniRef90_A0A417IN69	Phage portal protein	NA
UHGV-0076106_30	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-0076106_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0076106_30	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0076106_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0076106_31	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0076106_31	UniRef90	UniRef90_A0A1C5T9G1	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0076106_31	eggNOG-mapper	1504823.CCMM01000008_gene1046	cell adhesion	NA
UHGV-0076106_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0076106_31	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-0076106_31	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0076106_31	COG	COG2369	NA	NA
UHGV-0076106_31	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0076106_33	PHROG	phrog_3675	NA	unknown function
UHGV-0076106_33	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-0076106_33	eggNOG-mapper	1120978.KB894082_gene1061	YjcQ protein	NA
UHGV-0076106_33	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0076106_33	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0076106_34	PHROG	phrog_30609	NA	unknown function
UHGV-0076106_34	Structural annotation	PF21485	NA	NA