UHGV-0076159

Genome information

Genome length 42,186 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076159
vOTU ID	vOTU-009377
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_119408
BioSample	SAMEA2580138
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.46
Jumbo phage	No

Genome content
Genome length	42,186 bps
GC content	36.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	95.01%
Average CDS length	695.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076159_1	KOfam	K14059	int; integrase	NA
UHGV-0076159_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0076159_1	UniRef90	UniRef90_UPI001D0692F2	site-specific integrase	NA
UHGV-0076159_1	eggNOG-mapper	1232428.CAVO010000003_gene1025	Belongs to the 'phage' integrase family	NA
UHGV-0076159_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0076159_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0076159_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076159_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076159_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0076159_2	PHROG	phrog_20936	NA	unknown function
UHGV-0076159_2	UniRef90	UniRef90_D1YMA2	Peptidase_M78 domain-containing protein	NA
UHGV-0076159_2	eggNOG-mapper	706434.HMPREF9429_00182	NA	NA
UHGV-0076159_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0076159_2	Structural annotation	PF06114	NA	NA
UHGV-0076159_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0076159_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076159_4	UniRef90	UniRef90_A0A239ZAB0	Helix-turn-helix	NA
UHGV-0076159_4	eggNOG-mapper	706434.HMPREF9429_00594	Helix-turn-helix XRE-family like proteins	NA
UHGV-0076159_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076159_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076159_4	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0076159_5	UniRef90	UniRef90_A0A2C6BK51	Toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-0076159_5	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0076159_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0076159_7	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0076159_7	UniRef90	UniRef90_UPI00195FD229	helix-turn-helix domain-containing protein	NA
UHGV-0076159_7	eggNOG-mapper	195103.CPF_0933	NA	NA
UHGV-0076159_7	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0076159_7	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0076159_10	PHROG	phrog_674	NA	unknown function
UHGV-0076159_10	UniRef90	UniRef90_UPI001D090BA8	NA	NA
UHGV-0076159_10	eggNOG-mapper	1415775.U729_15	NA	NA
UHGV-0076159_10	Pfam	PF07083	NA	DUF1351
UHGV-0076159_10	Structural annotation	PF07083	NA	NA
UHGV-0076159_11	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076159_11	UniRef90	UniRef90_UPI001D07B780	RAD52 family DNA repair protein	NA
UHGV-0076159_11	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0076159_11	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0076159_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0076159_12	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0076159_13	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0076159_13	PHROG	phrog_7785	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076159_13	UniRef90	UniRef90_UPI000E746562	HNH endonuclease	NA
UHGV-0076159_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0076159_13	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0076159_13	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0076159_16	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0076159_16	UniRef90	UniRef90_A0A6A4UXR4	Phage replication initiation	NA
UHGV-0076159_16	eggNOG-mapper	706434.HMPREF9429_00547	DnaD domain protein	NA
UHGV-0076159_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0076159_17	PHROG	phrog_9804	NA	unknown function
UHGV-0076159_17	Structural annotation	PF11417	NA	NA
UHGV-0076159_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076159_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076159_19	UniRef90	UniRef90_UPI0019613F2D	single-stranded DNA-binding protein	NA
UHGV-0076159_19	eggNOG-mapper	936589.HMPREF1521_1228	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0076159_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076159_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076159_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076159_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076159_19	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0076159_21	PHROG	phrog_1672	NA	unknown function
UHGV-0076159_21	UniRef90	UniRef90_F5L204	Conserved domain protein	NA
UHGV-0076159_22	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0076159_22	UniRef90	UniRef90_A0A239ZA70	Methyltransferase domain	NA
UHGV-0076159_22	eggNOG-mapper	1401067.HMPREF0872_03435	methyltransferase	NA
UHGV-0076159_22	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0076159_22	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0076159_22	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0076159_22	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0076159_23	PHROG	phrog_2882	DNA methyltransferase	other
UHGV-0076159_23	UniRef90	UniRef90_UPI000E75FDEB	DNA methyltransferase	NA
UHGV-0076159_23	eggNOG-mapper	565653.EGBG_01954	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0076159_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0076159_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0076159_24	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0076159_24	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0076159_24	UniRef90	UniRef90_UPI00196047F8	site-specific DNA-methyltransferase	NA
UHGV-0076159_24	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0076159_24	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0076159_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0076159_24	COG	COG0863	DNA modification methylase	NA
UHGV-0076159_24	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0076159_25	PHROG	phrog_918	NA	unknown function
UHGV-0076159_25	UniRef90	UniRef90_UPI001960DED1	NA	NA
UHGV-0076159_25	eggNOG-mapper	1401067.HMPREF0872_03440	NA	NA
UHGV-0076159_25	Pfam	PF19791	NA	DUF6275
UHGV-0076159_25	Structural annotation	PF19791	NA	NA
UHGV-0076159_26	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076159_26	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0076159_26	eggNOG-mapper	1200557.JHWV01000001_gene280	NA	NA
UHGV-0076159_26	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0076159_30	PHROG	phrog_774	NA	unknown function
UHGV-0076159_30	UniRef90	UniRef90_A0A0B7LQN3	NA	NA
UHGV-0076159_30	eggNOG-mapper	1435051.BMOU_0242	Helix-turn-helix domain	NA
UHGV-0076159_30	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0076159_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076159_32	UniRef90	UniRef90_UPI0013DFE289	NA	NA
UHGV-0076159_32	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-0076159_32	Structural annotation	PF07374	NA	NA
UHGV-0076159_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0076159_36	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0076159_36	UniRef90	UniRef90_A0A496PEP2	Terminase small subunit	NA
UHGV-0076159_36	eggNOG-mapper	1235800.C819_00494	Terminase small subunit	NA
UHGV-0076159_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0076159_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0076159_36	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0076159_37	PHROG	phrog_5902	NA	unknown function
UHGV-0076159_37	UniRef90	UniRef90_UPI0018C4A0E6	terminase	NA
UHGV-0076159_37	eggNOG-mapper	1200557.JHWV01000001_gene277	Terminase RNaseH-like domain	NA
UHGV-0076159_37	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0076159_37	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0076159_39	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0076159_39	UniRef90	UniRef90_UPI001D07F371	portal protein	NA
UHGV-0076159_39	eggNOG-mapper	1401067.HMPREF0872_06810	Bacteriophage head to tail connecting protein	NA
UHGV-0076159_39	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0076159_39	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0076159_40	PHROG	phrog_528	NA	unknown function
UHGV-0076159_40	UniRef90	UniRef90_A0A8E8TUT9	Endopeptidase	NA
UHGV-0076159_40	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0076159_41	PHROG	phrog_458	protease	other
UHGV-0076159_41	UniRef90	UniRef90_A0A7X8Z540	Protease	NA
UHGV-0076159_41	eggNOG-mapper	1401067.HMPREF0872_06800	NA	NA
UHGV-0076159_42	PHROG	phrog_212	major head protein	head and packaging
UHGV-0076159_42	UniRef90	UniRef90_A0A239Z8I8	Phage capsid family	NA
UHGV-0076159_42	eggNOG-mapper	1401067.HMPREF0872_06795	NA	NA
UHGV-0076159_42	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0076159_42	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0076159_43	PHROG	phrog_427	NA	unknown function
UHGV-0076159_43	Structural annotation	PF21190	NA	NA
UHGV-0076159_45	PHROG	phrog_394	tail protein	tail
UHGV-0076159_45	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-0076159_45	eggNOG-mapper	1401067.HMPREF0872_06780	NA	NA
UHGV-0076159_45	Structural annotation	PF17212	NA	NA
UHGV-0076159_46	PHROG	phrog_376	tail protein	tail
UHGV-0076159_46	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0076159_46	eggNOG-mapper	1401067.HMPREF0872_06775	NA	NA
UHGV-0076159_46	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0076159_47	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0076159_47	UniRef90	UniRef90_UPI001D08FF44	NA	NA
UHGV-0076159_47	Structural annotation	PF11039, MF_02210, NF000165, COG1247	NA	NA
UHGV-0076159_48	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0076159_48	eggNOG-mapper	1401067.HMPREF0872_06765	NA	NA
UHGV-0076159_48	Structural annotation	PF05384, TIGR01010, COG3524	NA	NA
UHGV-0076159_49	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0076159_50	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0076159_50	PHROG	phrog_9880	NA	unknown function
UHGV-0076159_50	UniRef90	UniRef90_D1YMD8	MuF_C domain-containing protein	NA
UHGV-0076159_50	eggNOG-mapper	699218.HMPREF0889_0277	NA	NA
UHGV-0076159_50	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0076159_51	UniRef90	UniRef90_UPI001D087ED4	glycoside hydrolase family 55 protein	NA
UHGV-0076159_51	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0076159_51	COG	COG5434	Polygalacturonase	NA
UHGV-0076159_51	Structural annotation	PF05096, PF03906, MF_03008, TIGR03866, COG3204	NA	NA
UHGV-0076159_53	PHROG	phrog_23091	NA	unknown function
UHGV-0076159_53	Structural annotation	PF05105, NF035928	NA	NA
UHGV-0076159_55	PHROG	phrog_26249	NA	unknown function
UHGV-0076159_55	UniRef90	UniRef90_UPI001D017339	chitosanase	NA
UHGV-0076159_55	eggNOG-mapper	546273.VEIDISOL_01083	LysM domain	NA
UHGV-0076159_55	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-0076159_55	COG	COG1388	LysM repeat	NA
UHGV-0076159_55	Structural annotation	PF21277	NA	NA
UHGV-0076159_56	PHROG	phrog_10797	NA	unknown function
UHGV-0076159_56	UniRef90	UniRef90_A0A1B1I041	Glycoprotease	NA
UHGV-0076159_56	eggNOG-mapper	883156.HMPREF9282_01266	NA	NA
UHGV-0076159_56	Structural annotation	PF06531	NA	NA
UHGV-0076159_57	UniRef90	UniRef90_D1YME6	SprT-like domain-containing protein	NA
UHGV-0076159_57	Pfam	PF10263	SprT-like family	SprT-like
UHGV-0076159_57	Structural annotation	PF10263	NA	NA