UHGV-0076207

Genome information

Genome length 36,857 bps

CDS count 40

Completeness 79.61% (medium-quality)

geNomad score 0.9662

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076207
vOTU ID	vOTU-015760
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_109802
BioSample	SAMEA2580220
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9662
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.58
Jumbo phage	No

Genome content
Genome length	36,857 bps
GC content	52.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	91.88%
Average CDS length	850.80 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076207_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0076207_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0076207_1	UniRef90	UniRef90_R5UB18	Site-specific recombinase XerD	NA
UHGV-0076207_1	eggNOG-mapper	679935.Alfi_3042	Belongs to the 'phage' integrase family	NA
UHGV-0076207_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0076207_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076207_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076207_1	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0076207_2	eggNOG-mapper	435591.BDI_3751	NA	NA
UHGV-0076207_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0076207_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0076207_3	UniRef90	UniRef90_UPI0009DEAF49	helix-turn-helix domain-containing protein	NA
UHGV-0076207_3	eggNOG-mapper	1235788.C802_00043	Helix-turn-helix XRE-family like proteins	NA
UHGV-0076207_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076207_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0076207_3	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0076207_5	Structural annotation	PF14084	NA	NA
UHGV-0076207_8	PHROG	phrog_14584	NA	unknown function
UHGV-0076207_8	eggNOG-mapper	1268240.ATFI01000008_gene2554	NA	NA
UHGV-0076207_9	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0076207_9	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0076207_9	UniRef90	UniRef90_UPI0018A94F46	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0076207_9	eggNOG-mapper	1268240.ATFI01000008_gene2555	NA	NA
UHGV-0076207_9	Pfam	PF12684	NA	DUF3799
UHGV-0076207_9	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0076207_11	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076207_11	UniRef90	UniRef90_UPI0018AC7931	recombination protein NinG	NA
UHGV-0076207_11	eggNOG-mapper	435591.BDI_0857	Bacteriophage Lambda NinG protein	NA
UHGV-0076207_11	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0076207_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0076207_11	Structural annotation	PF05766	NA	NA
UHGV-0076207_12	PHROG	phrog_26490	NA	unknown function
UHGV-0076207_12	eggNOG-mapper	1178825.ALIH01000017_gene686	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-0076207_12	COG	COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA
UHGV-0076207_13	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076207_13	UniRef90	UniRef90_UPI0018A9D85E	HNH endonuclease	NA
UHGV-0076207_13	eggNOG-mapper	435590.BVU_2856	HNH nucleases	NA
UHGV-0076207_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0076207_14	PHROG	phrog_16304	NA	unknown function
UHGV-0076207_14	UniRef90	UniRef90_UPI001898327E	NA	NA
UHGV-0076207_14	Pfam	PF19808	NA	DUF6291
UHGV-0076207_15	PHROG	phrog_15937	NA	unknown function
UHGV-0076207_15	eggNOG-mapper	742727.HMPREF9447_04879	NA	NA
UHGV-0076207_16	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0076207_16	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0076207_16	UniRef90	UniRef90_A0A5B5VP29	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0076207_16	eggNOG-mapper	1121098.HMPREF1534_01084	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0076207_16	PADLOC	SspD_00001	SspD	SSP
UHGV-0076207_16	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0076207_16	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0076207_16	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0076207_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0076207_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0076207_17	UniRef90	UniRef90_UPI0018984E82	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0076207_17	eggNOG-mapper	1033733.CAEK01000007_gene1648	Cytosine-specific methyltransferase	NA
UHGV-0076207_17	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0076207_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0076207_17	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0076207_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0076207_17	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0076207_24	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0076207_24	UniRef90	UniRef90_A0A191ZDI3	Putative terminase small subunit	NA
UHGV-0076207_24	eggNOG-mapper	935837.JAEK01000054_gene1463	DNA-packaging protein gp3	NA
UHGV-0076207_24	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0076207_24	Structural annotation	PF16677	NA	NA
UHGV-0076207_25	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0076207_25	UniRef90	UniRef90_UPI001C3B1480	Phage terminase large subunit	NA
UHGV-0076207_25	eggNOG-mapper	445970.ALIPUT_00048	domain protein	NA
UHGV-0076207_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0076207_25	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0076207_25	COG	COG5410	NA	NA
UHGV-0076207_25	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0076207_26	PHROG	phrog_8193	major head protein	head and packaging
UHGV-0076207_26	UniRef90	UniRef90_I6S2L8	Putative tail protein	NA
UHGV-0076207_26	eggNOG-mapper	1176422.I6S2L8_9CAUD	NA	NA
UHGV-0076207_26	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0076207_27	PHROG	phrog_7376	portal protein	head and packaging
UHGV-0076207_27	UniRef90	UniRef90_A0A7U3MXY7	Portal protein	NA
UHGV-0076207_27	eggNOG-mapper	1121101.HMPREF1532_02599	NA	NA
UHGV-0076207_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0076207_29	PHROG	phrog_7970	virion structural protein	head and packaging
UHGV-0076207_29	UniRef90	UniRef90_A0A7U3MYE1	Putative capsid associated protein	NA
UHGV-0076207_29	eggNOG-mapper	99179.B5TRC6_9CAUD	NA	NA
UHGV-0076207_29	Structural annotation	PF21662	NA	NA
UHGV-0076207_30	PHROG	phrog_7231	virion structural protein	head and packaging
UHGV-0076207_30	UniRef90	UniRef90_A0A7U3MY95	Major capsid protein	NA
UHGV-0076207_30	eggNOG-mapper	99179.B5TRC7_9CAUD	NA	NA
UHGV-0076207_30	Structural annotation	PF05065, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0076207_31	PHROG	phrog_8189	NA	unknown function
UHGV-0076207_31	eggNOG-mapper	1105171.H2A0E2_9CAUD	NA	NA
UHGV-0076207_31	Structural annotation	PF02839, NF041539	NA	NA
UHGV-0076207_32	PHROG	phrog_6195	tail protein	tail
UHGV-0076207_32	UniRef90	UniRef90_A0A7U3MW91	Virion morphogenesis protein	NA
UHGV-0076207_32	eggNOG-mapper	1121101.HMPREF1532_02604	NA	NA
UHGV-0076207_33	PHROG	phrog_8145	NA	unknown function
UHGV-0076207_33	eggNOG-mapper	1176422.I6R1A5_9CAUD	NA	NA
UHGV-0076207_33	Structural annotation	PF08873	NA	NA
UHGV-0076207_35	PHROG	phrog_8914	virion structural protein	head and packaging
UHGV-0076207_35	UniRef90	UniRef90_A0A088C4G9	Tail assembly chaperone	NA
UHGV-0076207_35	eggNOG-mapper	99179.B5TR86_9CAUD	NA	NA
UHGV-0076207_36	PHROG	phrog_20660	tail length tape measure protein	tail
UHGV-0076207_36	UniRef90	UniRef90_H2A0C7	Putative DNA segregation protein	NA
UHGV-0076207_36	eggNOG-mapper	1105171.H2A0C7_9CAUD	NA	NA
UHGV-0076207_37	PHROG	phrog_19383	NA	unknown function
UHGV-0076207_37	eggNOG-mapper	1105171.H2A0C6_9CAUD	NA	NA
UHGV-0076207_37	Structural annotation	PF17994, NF033675	NA	NA
UHGV-0076207_38	PHROG	phrog_35885	NA	unknown function
UHGV-0076207_38	eggNOG-mapper	1176422.I6S2N2_9CAUD	NA	NA
UHGV-0076207_39	COG	COG4677	Pectin methylesterase and related acyl-CoA thioesterases	NA
UHGV-0076207_40	Pfam	PF07196	Flagellin hook IN motif	Flagellin_IN