UHGV-0076248

Genome information

Genome length 34,691 bps

CDS count 57

Completeness 98.02% (high-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076248
vOTU ID	vOTU-014068
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_126084
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.02% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.19
Jumbo phage	No

Genome content
Genome length	34,691 bps
GC content	57.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.45%
Average CDS length	559.68 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076248_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076248_1	UniRef90	UniRef90_UPI001CBE4822	helix-turn-helix domain-containing protein	NA
UHGV-0076248_1	eggNOG-mapper	1507.HMPREF0262_00424	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0076248_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076248_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076248_1	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0076248_3	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0076248_4	PHROG	phrog_32852	NA	unknown function
UHGV-0076248_5	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0076248_5	UniRef90	UniRef90_UPI0012DDCD27	Lar family restriction alleviation protein	NA
UHGV-0076248_5	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0076248_5	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0076248_8	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0076248_8	UniRef90	UniRef90_UPI001CBC74BC	Rha family transcriptional regulator	NA
UHGV-0076248_8	eggNOG-mapper	1497679.EP56_18110	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0076248_8	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0076248_8	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0076248_8	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0076248_8	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0076248_9	UniRef90	UniRef90_A0A2J4JRR2	XRE family transcriptional regulator	NA
UHGV-0076248_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0076248_10	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-0076248_10	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0076248_10	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0076248_11	PHROG	phrog_32852	NA	unknown function
UHGV-0076248_15	PHROG	phrog_38771	NA	unknown function
UHGV-0076248_16	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0076248_16	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0076248_16	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0076248_16	Pfam	PF04404	ERF superfamily	ERF
UHGV-0076248_16	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0076248_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076248_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076248_17	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0076248_17	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0076248_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076248_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076248_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076248_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076248_17	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0076248_18	Structural annotation	PF20964, PF13384, NF011523	NA	NA
UHGV-0076248_19	PHROG	phrog_15768	NA	unknown function
UHGV-0076248_19	UniRef90	UniRef90_A0A3F3JUK4	NA	NA
UHGV-0076248_19	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0076248_19	Pfam	PF19808	NA	DUF6291
UHGV-0076248_19	Structural annotation	PF19808	NA	NA
UHGV-0076248_20	Structural annotation	PF11417	NA	NA
UHGV-0076248_21	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0076248_21	UniRef90	UniRef90_E2ZNS5	Siphovirus Gp157	NA
UHGV-0076248_21	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0076248_21	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0076248_21	Structural annotation	PF05565	NA	NA
UHGV-0076248_23	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0076248_23	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0076248_23	UniRef90	UniRef90_A0A3E2UF94	DNA methylase N-4	NA
UHGV-0076248_23	eggNOG-mapper	936573.HMPREF1147_1705	DEAD-like helicases superfamily	NA
UHGV-0076248_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0076248_23	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0076248_23	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0076248_24	PHROG	phrog_6568	NA	unknown function
UHGV-0076248_24	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0076248_25	PHROG	phrog_3253	NA	unknown function
UHGV-0076248_25	UniRef90	UniRef90_UPI00130EDE0D	resolvase	NA
UHGV-0076248_25	eggNOG-mapper	1151292.QEW_3282	NA	NA
UHGV-0076248_25	Structural annotation	PF18618	NA	NA
UHGV-0076248_29	PHROG	phrog_3136	NA	unknown function
UHGV-0076248_29	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0076248_29	eggNOG-mapper	1007096.BAGW01000031_gene120	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0076248_29	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0076248_29	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA
UHGV-0076248_30	KOfam	K03700	recU; recombination protein U	NA
UHGV-0076248_30	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076248_30	UniRef90	UniRef90_A0A1C5P0D5	Holliday junction resolvase RecU	NA
UHGV-0076248_30	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0076248_30	Pfam	PF03838	Recombination protein U	RecU
UHGV-0076248_30	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0076248_30	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0076248_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076248_31	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0076248_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0076248_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0076248_32	UniRef90	UniRef90_A0A3A6JQY9	Terminase small subunit	NA
UHGV-0076248_32	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-0076248_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0076248_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0076248_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076248_33	PHROG	phrog_10250	NA	unknown function
UHGV-0076248_33	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-0076248_33	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0076248_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0076248_33	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0076248_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076248_33	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0076248_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0076248_34	UniRef90	UniRef90_E2ZNR0	Putative phage minor capsid protein	NA
UHGV-0076248_34	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-0076248_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0076248_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0076248_35	UniRef90	UniRef90_A0A2K9V3K1	Minor capsid protein	NA
UHGV-0076248_35	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-0076248_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0076248_35	COG	COG2369	NA	NA
UHGV-0076248_35	Structural annotation	PF06152, PF07737, TIGR01641, COG2369	NA	NA
UHGV-0076248_37	PHROG	phrog_3675	NA	unknown function
UHGV-0076248_37	UniRef90	UniRef90_A0A2A7AIK7	Dihydrolipoyl dehydrogenase	NA
UHGV-0076248_37	eggNOG-mapper	1122173.AXVL01000018_gene435	YjcQ protein	NA
UHGV-0076248_37	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0076248_37	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0076248_38	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0076248_38	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0076248_38	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0076248_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0076248_39	UniRef90	UniRef90_E6U604	Minor structural GP20 protein	NA
UHGV-0076248_39	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-0076248_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0076248_39	Structural annotation	PF06810	NA	NA
UHGV-0076248_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0076248_40	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-0076248_40	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-0076248_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0076248_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0076248_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0076248_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0076248_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0076248_42	PHROG	phrog_3366	NA	unknown function
UHGV-0076248_42	Structural annotation	PF20536	NA	NA
UHGV-0076248_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0076248_43	UniRef90	UniRef90_UPI000B10EF5E	minor capsid protein	NA
UHGV-0076248_43	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-0076248_43	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0076248_43	Structural annotation	PF11114	NA	NA
UHGV-0076248_44	PHROG	phrog_3266	tail completion	connector
UHGV-0076248_44	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-0076248_44	eggNOG-mapper	748224.HMPREF9436_03331	NA	NA
UHGV-0076248_44	Structural annotation	PF12691	NA	NA
UHGV-0076248_45	PHROG	phrog_820	major tail protein	tail
UHGV-0076248_45	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-0076248_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0076248_46	PHROG	phrog_4450	NA	unknown function
UHGV-0076248_46	Structural annotation	PF20378	NA	NA
UHGV-0076248_47	PHROG	phrog_706	NA	unknown function
UHGV-0076248_47	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-0076248_47	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-0076248_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0076248_47	Structural annotation	PF06854	NA	NA
UHGV-0076248_48	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0076248_48	UniRef90	UniRef90_A0A2J4JRN1	TMP_3 domain-containing protein	NA
UHGV-0076248_48	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0076248_48	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0076248_48	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0076248_48	COG	COG5283	Phage-related tail protein	NA
UHGV-0076248_48	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0076248_49	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-0076248_49	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-0076248_49	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0076248_50	PHROG	phrog_538	minor tail protein	tail
UHGV-0076248_50	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0076248_50	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0076248_50	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0076248_50	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0076248_51	PHROG	phrog_9534	head protein	head and packaging
UHGV-0076248_51	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-0076248_51	Structural annotation	PF21567	NA	NA
UHGV-0076248_52	PHROG	phrog_2310	NA	unknown function
UHGV-0076248_53	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0076248_53	PHROG	phrog_894	endolysin	lysis
UHGV-0076248_53	UniRef90	UniRef90_A0A1C5NY12	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-0076248_53	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-0076248_53	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0076248_53	COG	COG3108	NA	NA
UHGV-0076248_53	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0076248_54	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0076248_54	UniRef90	UniRef90_A0A3E2XB99	NA	NA
UHGV-0076248_54	eggNOG-mapper	748224.HMPREF9436_01411	NA	NA
UHGV-0076248_54	Pfam	PF14359	NA	DUF4406
UHGV-0076248_54	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0076248_55	PHROG	phrog_1863	NA	unknown function
UHGV-0076248_55	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0076248_56	PHROG	phrog_263	holin	lysis
UHGV-0076248_56	UniRef90	UniRef90_E2ZIC2	Holin, SPP1 family	NA
UHGV-0076248_56	eggNOG-mapper	748224.HMPREF9436_01413	SPP1 phage holin	NA
UHGV-0076248_56	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0076248_56	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0076248_56	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0076248_57	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0076248_57	PHROG	phrog_24603	NA	unknown function
UHGV-0076248_57	UniRef90	UniRef90_E2ZIC9	Spo0A_C domain-containing protein	NA
UHGV-0076248_57	eggNOG-mapper	1226322.HMPREF1545_01110	Sporulation initiation factor Spo0A C terminal	NA
UHGV-0076248_57	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0076248_57	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0076248_57	Structural annotation	PF08769, TIGR02875	NA	NA