UHGV-0076262

Genome information

Genome length 21,753 bps

CDS count 27

Completeness 52.79% (medium-quality)

geNomad score 0.9198

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076262
vOTU ID	vOTU-022681
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_109170
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9198
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.65
Jumbo phage	No

Genome content
Genome length	21,753 bps
GC content	37.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	88.91%
Average CDS length	719.11 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076262_1	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0076262_1	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0076262_1	UniRef90	UniRef90_E1W5G8	Replicative DNA helicase	NA
UHGV-0076262_1	eggNOG-mapper	862965.PARA_15120	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0076262_1	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0076262_1	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0076262_1	NCBIFam	NF005369.0	replicative DNA helicase	NA
UHGV-0076262_1	COG	COG0305	Replicative DNA helicase	NA
UHGV-0076262_1	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0076262_2	KOfam	K00873	PK, pyk; pyruvate kinase [EC:2.7.1.40]	NA
UHGV-0076262_2	PHROG	phrog_25828	NA	unknown function
UHGV-0076262_2	UniRef90	UniRef90_A0A1B8T781	Pyruvate kinase	NA
UHGV-0076262_2	eggNOG-mapper	862965.PARA_15110	Belongs to the pyruvate kinase family	NA
UHGV-0076262_2	Pfam	PF00224	Pyruvate kinase, barrel domain	PK
UHGV-0076262_2	Pfam	PF02887	Pyruvate kinase, alpha/beta domain	PK_C
UHGV-0076262_2	NCBIFam	NF004491.0	pyruvate kinase	NA
UHGV-0076262_2	COG	COG0469	Pyruvate kinase	NA
UHGV-0076262_3	KOfam	K14059	int; integrase	NA
UHGV-0076262_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0076262_3	UniRef90	UniRef90_F0ETI1	Prophage CP4-57 integrase	NA
UHGV-0076262_3	eggNOG-mapper	696748.ASU2_03270	Belongs to the 'phage' integrase family	NA
UHGV-0076262_3	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0076262_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0076262_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076262_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076262_3	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0076262_4	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0076262_4	UniRef90	UniRef90_F0ETI0	Nucleoside triphosphatase, D5 family	NA
UHGV-0076262_4	eggNOG-mapper	1461579.CCNK01000031_gene1086	D5 N terminal like	NA
UHGV-0076262_4	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0076262_4	Pfam	PF19263	NA	DUF5906
UHGV-0076262_4	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0076262_4	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0076262_4	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0076262_4	Structural annotation	PF01057, MF_04000, NF011296, COG3378	NA	NA
UHGV-0076262_6	eggNOG-mapper	1028806.GGE_2215	NA	NA
UHGV-0076262_7	eggNOG-mapper	1095749.HMPREF1052_0953	NA	NA
UHGV-0076262_8	eggNOG-mapper	1095749.HMPREF1052_0952	NA	NA
UHGV-0076262_9	PHROG	phrog_1743	transcriptional repressor	transcription regulation
UHGV-0076262_9	UniRef90	UniRef90_A0A1S1FRK7	Ash family protein	NA
UHGV-0076262_9	eggNOG-mapper	634176.NT05HA_1826	Ash protein family	NA
UHGV-0076262_9	Pfam	PF10554	Ash protein family	Phage_ASH
UHGV-0076262_9	NCBIFam	NF033153.2	host cell division inhibitor Icd-like protein	NA
UHGV-0076262_9	Structural annotation	NF033153	NA	NA
UHGV-0076262_11	eggNOG-mapper	696748.ASU2_03240	NA	NA
UHGV-0076262_12	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-0076262_12	UniRef90	UniRef90_A0A1B8QU40	Transcriptional regulator	NA
UHGV-0076262_12	eggNOG-mapper	1095749.HMPREF1052_0950	DNA excision	NA
UHGV-0076262_12	Pfam	PF05930	Prophage CP4-57 regulatory protein (AlpA)	Phage_AlpA
UHGV-0076262_12	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0076262_12	Structural annotation	PF05930, NF010315, COG3311	NA	NA
UHGV-0076262_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0076262_16	UniRef90	UniRef90_I3DCP4	Bacteriophage protein, PF04883 family	NA
UHGV-0076262_16	eggNOG-mapper	1095749.HMPREF1052_0947	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0076262_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0076262_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0076262_16	Structural annotation	TIGR01725	NA	NA
UHGV-0076262_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0076262_17	UniRef90	UniRef90_H1LN19	Putative phage terminase, large subunit	NA
UHGV-0076262_17	eggNOG-mapper	1028806.GGE_0920	terminase	NA
UHGV-0076262_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0076262_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0076262_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0076262_17	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0076262_18	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0076262_18	UniRef90	UniRef90_A0A0M3G6N8	Phage terminase small subunit P27 family	NA
UHGV-0076262_18	eggNOG-mapper	1035839.AFNK01000053_gene896	terminase, small subunit	NA
UHGV-0076262_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0076262_18	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0076262_18	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0076262_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0076262_19	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0076262_19	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076262_19	UniRef90	UniRef90_A0A0M3G6U0	HNHc domain-containing protein	NA
UHGV-0076262_19	eggNOG-mapper	1095749.HMPREF1052_0944	HNH endonuclease	NA
UHGV-0076262_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0076262_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0076262_19	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0076262_20	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0076262_20	UniRef90	UniRef90_H1LN22	DNA packaging protein, QLRG family	NA
UHGV-0076262_20	eggNOG-mapper	1028806.GGE_0918	Phage gp6-like head-tail connector protein	NA
UHGV-0076262_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0076262_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0076262_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0076262_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0076262_21	UniRef90	UniRef90_A0A369ZAF4	Head-tail adaptor protein	NA
UHGV-0076262_21	eggNOG-mapper	1035839.AFNK01000053_gene898	Phage head-tail joining protein	NA
UHGV-0076262_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0076262_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0076262_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0076262_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0076262_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0076262_22	UniRef90	UniRef90_A0A1B8T6C8	Phage portal protein	NA
UHGV-0076262_22	eggNOG-mapper	1028806.GGE_0916	portal protein	NA
UHGV-0076262_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0076262_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0076262_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0076262_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0076262_23	KOfam	K06904	NA	NA
UHGV-0076262_23	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0076262_23	UniRef90	UniRef90_UPI0008A2EE04	HK97 family phage prohead protease	NA
UHGV-0076262_23	eggNOG-mapper	1028806.GGE_0915	Prohead protease	NA
UHGV-0076262_23	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0076262_23	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0076262_23	COG	COG3740	Phage head maturation protease	NA
UHGV-0076262_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0076262_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0076262_24	UniRef90	UniRef90_H1LN26	Phage major capsid protein, HK97 family	NA
UHGV-0076262_24	eggNOG-mapper	1028806.GGE_0914	capsid protein	NA
UHGV-0076262_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0076262_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0076262_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0076262_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0076262_26	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-0076262_26	PHROG	phrog_3940	NA	unknown function
UHGV-0076262_26	UniRef90	UniRef90_A3MZL4	ATPase_AAA_core domain-containing protein	NA
UHGV-0076262_26	eggNOG-mapper	416269.APL_0496	AAA ATPase domain	NA
UHGV-0076262_26	PADLOC	retron_type_I_B1_atpase_toprim_cluster22_2	NA	Retron
UHGV-0076262_26	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-0076262_26	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0076262_26	Structural annotation	PF11398, MF_00365, NF041760, COG4938	NA	NA
UHGV-0076262_27	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0076262_27	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0076262_27	UniRef90	UniRef90_A0A377JKF9	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0076262_27	eggNOG-mapper	228399.appser1_5490	Pfam D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0076262_27	PADLOC	MTase_II_00144	Type II methyltransferase	RM
UHGV-0076262_27	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0076262_27	COG	COG0338	DNA-adenine methylase	NA
UHGV-0076262_27	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA