UHGV-0076274

Genome information

Genome length 36,261 bps

CDS count 54

Completeness 58.02% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076274
vOTU ID	vOTU-037463
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_133022
BioSample	SAMEA2737824
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.27
Jumbo phage	No

Genome content
Genome length	36,261 bps
GC content	46.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.81%
Average CDS length	631.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076274_1	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0076274_6	PHROG	phrog_2152	NA	unknown function
UHGV-0076274_6	UniRef90	UniRef90_UPI0011CA98EE	NA	NA
UHGV-0076274_6	eggNOG-mapper	742733.HMPREF9469_05079	NA	NA
UHGV-0076274_6	Pfam	PF19880	NA	DUF6353
UHGV-0076274_6	Structural annotation	PF19880	NA	NA
UHGV-0076274_11	PHROG	phrog_17256	NA	unknown function
UHGV-0076274_11	eggNOG-mapper	665950.HMPREF1025_01937	NA	NA
UHGV-0076274_12	eggNOG-mapper	1514668.JOOA01000002_gene1441	NA	NA
UHGV-0076274_12	Pfam	PF20234	NA	DUF6591
UHGV-0076274_12	Structural annotation	PF20234, PF09624	NA	NA
UHGV-0076274_13	PHROG	phrog_15866	NA	unknown function
UHGV-0076274_14	eggNOG-mapper	665956.HMPREF1032_00626	NA	NA
UHGV-0076274_19	eggNOG-mapper	691965.D4P7I0_9CAUD	NA	NA
UHGV-0076274_20	PHROG	phrog_11237	NA	unknown function
UHGV-0076274_20	eggNOG-mapper	478749.BRYFOR_08581	NA	NA
UHGV-0076274_21	PHROG	phrog_6058	NA	unknown function
UHGV-0076274_21	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0076274_21	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0076274_22	KOfam	K14059	int; integrase	NA
UHGV-0076274_22	PHROG	phrog_1	integrase	integration and excision
UHGV-0076274_22	UniRef90	UniRef90_H1CCE3	Tyr recombinase domain-containing protein	NA
UHGV-0076274_22	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-0076274_22	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0076274_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076274_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076274_22	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0076274_23	PHROG	phrog_881	holin	lysis
UHGV-0076274_23	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0076274_23	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0076274_23	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0076274_23	Structural annotation	PF16938	NA	NA
UHGV-0076274_24	PHROG	phrog_4105	NA	unknown function
UHGV-0076274_24	UniRef90	UniRef90_A0A7M4BNX2	Phage holin	NA
UHGV-0076274_24	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0076274_25	PHROG	phrog_38190	NA	unknown function
UHGV-0076274_25	eggNOG-mapper	665956.HMPREF1032_02936	NA	NA
UHGV-0076274_26	Structural annotation	PF20328, NF033679, COG4935	NA	NA
UHGV-0076274_27	PHROG	phrog_19111	NA	unknown function
UHGV-0076274_27	eggNOG-mapper	756499.Desde_3162	nuclear chromosome segregation	NA
UHGV-0076274_27	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0076274_28	eggNOG-mapper	537007.BLAHAN_05239	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0076274_28	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0076274_29	PHROG	phrog_13589	NA	unknown function
UHGV-0076274_29	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0076274_29	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0076274_30	Structural annotation	PF20622, COG5456	NA	NA
UHGV-0076274_31	PHROG	phrog_134	NA	unknown function
UHGV-0076274_31	UniRef90	UniRef90_UPI0011ACE89A	XkdX family protein	NA
UHGV-0076274_31	eggNOG-mapper	697281.Mahau_0596	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0076274_31	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0076274_31	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0076274_33	UniRef90	UniRef90_G4KPI2	NA	NA
UHGV-0076274_33	eggNOG-mapper	693746.OBV_22720	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0076274_33	Pfam	PF19789	NA	DUF6273
UHGV-0076274_33	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0076274_33	Structural annotation	PF19789	NA	NA
UHGV-0076274_34	PHROG	phrog_1220	head protein	head and packaging
UHGV-0076274_34	UniRef90	UniRef90_Q5L2K4	Phage-related protein	NA
UHGV-0076274_34	eggNOG-mapper	428125.CLOLEP_01425	COG NOG18825 non supervised orthologous group	NA
UHGV-0076274_34	Structural annotation	PF20747	NA	NA
UHGV-0076274_35	PHROG	phrog_538	minor tail protein	tail
UHGV-0076274_35	UniRef90	UniRef90_UPI0011DE0073	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0076274_35	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0076274_35	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0076274_35	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0076274_36	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0076274_36	UniRef90	UniRef90_UPI0011DCCBB1	phage tail family protein	NA
UHGV-0076274_36	eggNOG-mapper	742733.HMPREF9469_05019	Phage tail protein	NA
UHGV-0076274_36	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0076274_36	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0076274_37	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0076274_37	UniRef90	UniRef90_A0A3A9ITG5	Phage tail tape measure protein	NA
UHGV-0076274_37	eggNOG-mapper	428125.CLOLEP_01422	phage tail tape measure protein	NA
UHGV-0076274_37	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0076274_37	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0076274_37	COG	COG5412	Phage-related protein	NA
UHGV-0076274_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0076274_38	UniRef90	UniRef90_A0A411ZT27	HK97 gp10 family phage protein	NA
UHGV-0076274_38	eggNOG-mapper	665956.HMPREF1032_00685	NA	NA
UHGV-0076274_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0076274_38	Structural annotation	TIGR01725	NA	NA
UHGV-0076274_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0076274_39	PHROG	phrog_291	endolysin	lysis
UHGV-0076274_39	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0076274_39	eggNOG-mapper	665956.HMPREF1032_03921	NA	NA
UHGV-0076274_39	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0076274_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0076274_39	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0076274_40	PHROG	phrog_4338	NA	unknown function
UHGV-0076274_40	eggNOG-mapper	428125.CLOLEP_01417	NA	NA
UHGV-0076274_41	PHROG	phrog_4282	NA	unknown function
UHGV-0076274_41	eggNOG-mapper	478749.BRYFOR_08517	NA	NA
UHGV-0076274_42	PHROG	phrog_2645	major tail protein	tail
UHGV-0076274_42	UniRef90	UniRef90_A0A2U8UI58	Major tail protein	NA
UHGV-0076274_42	eggNOG-mapper	411460.RUMTOR_01342	NA	NA
UHGV-0076274_42	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0076274_43	UniRef90	UniRef90_D4P7D8	Structural protein	NA
UHGV-0076274_43	eggNOG-mapper	691965.D4P7D8_9CAUD	NA	NA
UHGV-0076274_43	Structural annotation	PF20765	NA	NA
UHGV-0076274_44	PHROG	phrog_4270	NA	unknown function
UHGV-0076274_44	eggNOG-mapper	665956.HMPREF1032_00677	NA	NA
UHGV-0076274_44	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0076274_45	KOfam	K06904	NA	NA
UHGV-0076274_45	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0076274_45	UniRef90	UniRef90_D4N0R6	Phage capsid family./Caudovirus prohead protease	NA
UHGV-0076274_45	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-0076274_45	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0076274_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0076274_45	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-0076274_46	PHROG	phrog_12	portal protein	head and packaging
UHGV-0076274_46	UniRef90	UniRef90_UPI001D05DA00	phage portal protein	NA
UHGV-0076274_46	eggNOG-mapper	411460.RUMTOR_01348	Phage portal protein	NA
UHGV-0076274_46	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0076274_46	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0076274_48	PHROG	phrog_32444	NA	unknown function
UHGV-0076274_48	eggNOG-mapper	665956.HMPREF1032_00671	NA	NA
UHGV-0076274_49	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0076274_49	UniRef90	UniRef90_UPI001D05F004	terminase large subunit	NA
UHGV-0076274_49	eggNOG-mapper	742740.HMPREF9474_02272	Phage Terminase	NA
UHGV-0076274_49	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0076274_49	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0076274_49	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0076274_50	PHROG	phrog_32444	NA	unknown function
UHGV-0076274_50	eggNOG-mapper	428125.CLOLEP_01408	NA	NA
UHGV-0076274_51	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0076274_51	UniRef90	UniRef90_A0A373C8E1	Structural protein	NA
UHGV-0076274_51	eggNOG-mapper	665950.HMPREF1025_01991	NA	NA
UHGV-0076274_52	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076274_52	eggNOG-mapper	411460.RUMTOR_01352	NA	NA
UHGV-0076274_53	PHROG	phrog_4259	NA	unknown function
UHGV-0076274_53	eggNOG-mapper	742740.HMPREF9474_02276	NA	NA