UHGV-0076282

Genome information

Genome length 24,092 bps

CDS count 38

Completeness 64.52% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076282
vOTU ID	vOTU-039812
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_120073
BioSample	SAMEA2580210
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.85
Jumbo phage	No

Genome content
Genome length	24,092 bps
GC content	43.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	93.33%
Average CDS length	596.05 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076282_2	PHROG	phrog_10714	NA	unknown function
UHGV-0076282_2	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0076282_4	Structural annotation	PF02895	NA	NA
UHGV-0076282_5	PHROG	phrog_15198	NA	unknown function
UHGV-0076282_5	UniRef90	UniRef90_S2YRM1	NA	NA
UHGV-0076282_5	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0076282_5	Pfam	PF04448	NA	DUF551
UHGV-0076282_7	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0076282_9	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076282_9	UniRef90	UniRef90_A0A3E4V8N2	Sigma70_r4 domain-containing protein	NA
UHGV-0076282_9	eggNOG-mapper	411470.RUMGNA_02205	Sigma-70, region 4	NA
UHGV-0076282_9	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0076282_10	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0076282_10	UniRef90	UniRef90_A0A2N5PKF8	Transposase	NA
UHGV-0076282_10	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0076282_10	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0076282_10	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0076282_10	Structural annotation	PF07141	NA	NA
UHGV-0076282_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076282_11	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0076282_11	UniRef90	UniRef90_A0A2N5PKF3	Terminase	NA
UHGV-0076282_11	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0076282_11	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0076282_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076282_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076282_11	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0076282_12	PHROG	phrog_533	portal protein	head and packaging
UHGV-0076282_12	UniRef90	UniRef90_A0A2N5PKH7	Phage capsid protein	NA
UHGV-0076282_12	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0076282_12	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0076282_13	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0076282_13	UniRef90	UniRef90_A0A2N5PKG3	Minor capsid protein	NA
UHGV-0076282_13	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0076282_13	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0076282_13	COG	COG2369	NA	NA
UHGV-0076282_13	Structural annotation	PF06152	NA	NA
UHGV-0076282_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0076282_14	UniRef90	UniRef90_A0A6N2UWT0	Phage minor structural protein GP20	NA
UHGV-0076282_14	eggNOG-mapper	1304866.K413DRAFT_3037	Phage minor structural protein GP20	NA
UHGV-0076282_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0076282_14	Structural annotation	PF06810	NA	NA
UHGV-0076282_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0076282_15	eggNOG-mapper	658655.HMPREF0988_02560	NA	NA
UHGV-0076282_15	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0076282_16	UniRef90	UniRef90_UPI00189FFCE4	head fiber protein	NA
UHGV-0076282_16	eggNOG-mapper	435591.BDI_0884	Head fiber protein	NA
UHGV-0076282_16	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0076282_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0076282_17	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0076282_18	PHROG	phrog_3366	NA	unknown function
UHGV-0076282_18	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0076282_18	Pfam	PF20536	NA	DUF6751
UHGV-0076282_18	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0076282_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0076282_19	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0076282_19	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0076282_19	Structural annotation	PF11114	NA	NA
UHGV-0076282_20	PHROG	phrog_3266	tail completion	connector
UHGV-0076282_20	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0076282_20	Structural annotation	PF12691	NA	NA
UHGV-0076282_21	PHROG	phrog_3099	NA	unknown function
UHGV-0076282_21	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0076282_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0076282_22	PHROG	phrog_4450	NA	unknown function
UHGV-0076282_22	UniRef90	UniRef90_UPI0018AB083C	AP endonuclease	NA
UHGV-0076282_22	eggNOG-mapper	411470.RUMGNA_02225	NA	NA
UHGV-0076282_22	Pfam	PF20378	NA	DUF6673
UHGV-0076282_22	Structural annotation	PF20378	NA	NA
UHGV-0076282_23	PHROG	phrog_706	NA	unknown function
UHGV-0076282_23	UniRef90	UniRef90_A7B3U5	Bacteriophage Gp15 protein	NA
UHGV-0076282_23	eggNOG-mapper	411470.RUMGNA_02226	COG NOG24969 non supervised orthologous group	NA
UHGV-0076282_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0076282_23	Structural annotation	PF06854	NA	NA
UHGV-0076282_24	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0076282_24	UniRef90	UniRef90_A0A8B3C0A6	TMP_3 domain-containing protein	NA
UHGV-0076282_24	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0076282_24	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0076282_24	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0076282_24	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0076282_24	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0076282_25	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0076282_25	UniRef90	UniRef90_A7B3U8	Putative phage tail component domain protein	NA
UHGV-0076282_25	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0076282_25	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0076282_25	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0076282_25	COG	COG4722	Phage-related protein YomH	NA
UHGV-0076282_25	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0076282_26	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0076282_26	UniRef90	UniRef90_UPI0004634EC1	collagen-like protein	NA
UHGV-0076282_26	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0076282_26	Structural annotation	PF14594, PF08931, PF20942, TIGR01665, COG4926	NA	NA
UHGV-0076282_27	PHROG	phrog_19695	NA	unknown function
UHGV-0076282_27	eggNOG-mapper	1232452.BAIB02000007_gene1611	NA	NA
UHGV-0076282_27	Structural annotation	PF19714	NA	NA
UHGV-0076282_28	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0076282_29	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0076282_29	UniRef90	UniRef90_UPI001D07E897	NA	NA
UHGV-0076282_29	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0076282_29	Pfam	PF19789	NA	DUF6273
UHGV-0076282_29	Structural annotation	PF19789	NA	NA
UHGV-0076282_30	UniRef90	UniRef90_UPI00189E384C	four helix bundle protein	NA
UHGV-0076282_30	eggNOG-mapper	1235797.C816_02835	NA	NA
UHGV-0076282_30	Structural annotation	PF05635, NF033474	NA	NA
UHGV-0076282_32	PHROG	phrog_1382	NA	unknown function
UHGV-0076282_32	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-0076282_33	eggNOG-mapper	33035.JPJF01000043_gene997	NA	NA
UHGV-0076282_34	eggNOG-mapper	608534.GCWU000341_02271	NA	NA
UHGV-0076282_35	PHROG	phrog_10091	holin	lysis
UHGV-0076282_35	UniRef90	UniRef90_A0A2N5P008	Phage holin	NA
UHGV-0076282_35	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0076282_35	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0076282_35	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0076282_35	COG	COG5546	NA	NA
UHGV-0076282_35	Structural annotation	COG5546	NA	NA
UHGV-0076282_37	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0076282_37	PHROG	phrog_833	endolysin	lysis
UHGV-0076282_37	UniRef90	UniRef90_UPI000E52EE08	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076282_37	eggNOG-mapper	411470.RUMGNA_03787	COG NOG33632 non supervised orthologous group	NA
UHGV-0076282_37	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0076282_37	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0076282_37	Structural annotation	PF01510, COG5632	NA	NA