UHGV-0076300

Genome information

Genome length 28,551 bps

CDS count 43

Completeness 79.55% (medium-quality)

geNomad score 0.9694

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076300
vOTU ID	vOTU-022929
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_116949
BioSample	SAMEA2580284
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9694
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.23
Jumbo phage	No

Genome content
Genome length	28,551 bps
GC content	28.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	88.26%
Average CDS length	589.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076300_2	KOfam	K07012	cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]	NA
UHGV-0076300_2	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0076300_2	UniRef90	UniRef90_A0A373GWE3	CRISPR-associated helicase Cas3	NA
UHGV-0076300_2	eggNOG-mapper	411468.CLOSCI_02083	NA	NA
UHGV-0076300_2	PADLOC	Cas3c_WP_004513240.1	NA	CRISPR-CAS
UHGV-0076300_2	Pfam	PF18019	Cas3, HD domain	Cas3_HD
UHGV-0076300_2	Pfam	PF00270	DEAD/DEAH box helicase	DEAD
UHGV-0076300_2	NCBIFam	TIGR01587.1	CRISPR-associated helicase Cas3'	NA
UHGV-0076300_2	COG	COG1203	CRISPR-Cas type I system-associated endonuclease/helicase Cas3	NA
UHGV-0076300_12	Structural annotation	PF15456	NA	NA
UHGV-0076300_15	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0076300_15	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-0076300_15	eggNOG-mapper	649747.HMPREF0083_05320	transposase activity	NA
UHGV-0076300_15	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0076300_15	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0076300_15	Structural annotation	PF07141	NA	NA
UHGV-0076300_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076300_16	PHROG	phrog_10250	NA	unknown function
UHGV-0076300_16	UniRef90	UniRef90_A0A3B8SL24	PBSX family phage terminase large subunit	NA
UHGV-0076300_16	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0076300_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0076300_16	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0076300_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076300_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076300_16	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0076300_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0076300_17	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-0076300_17	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0076300_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0076300_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0076300_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0076300_18	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-0076300_18	eggNOG-mapper	1539298.JO41_08260	Phage minor capsid protein 2	NA
UHGV-0076300_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0076300_18	COG	COG2369	NA	NA
UHGV-0076300_18	Structural annotation	PF06152	NA	NA
UHGV-0076300_19	Structural annotation	PF19593	NA	NA
UHGV-0076300_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0076300_20	UniRef90	UniRef90_UPI00117868A2	phage scaffolding protein	NA
UHGV-0076300_20	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-0076300_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0076300_20	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0076300_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0076300_21	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-0076300_21	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0076300_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0076300_23	eggNOG-mapper	632245.CLP_1650	NA	NA
UHGV-0076300_24	PHROG	phrog_3366	NA	unknown function
UHGV-0076300_24	eggNOG-mapper	1120998.AUFC01000030_gene2238	NA	NA
UHGV-0076300_24	Pfam	PF20536	NA	DUF6751
UHGV-0076300_24	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0076300_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0076300_25	UniRef90	UniRef90_A0A2N2DTR3	Capsid protein	NA
UHGV-0076300_25	eggNOG-mapper	1499683.CCFF01000017_gene2571	Minor capsid protein	NA
UHGV-0076300_25	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0076300_25	Structural annotation	PF11114	NA	NA
UHGV-0076300_26	PHROG	phrog_3266	tail completion	connector
UHGV-0076300_26	UniRef90	UniRef90_UPI0018994F5C	chloramphenicol resistance protein	NA
UHGV-0076300_26	eggNOG-mapper	1540257.JQMW01000013_gene737	NA	NA
UHGV-0076300_26	Structural annotation	PF12691	NA	NA
UHGV-0076300_27	PHROG	phrog_3099	NA	unknown function
UHGV-0076300_27	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-0076300_27	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0076300_28	Structural annotation	PF10666	NA	NA
UHGV-0076300_29	PHROG	phrog_706	NA	unknown function
UHGV-0076300_29	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0076300_29	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0076300_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0076300_29	Structural annotation	PF06854	NA	NA
UHGV-0076300_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0076300_30	eggNOG-mapper	1321778.HMPREF1982_02681	SLT domain	NA
UHGV-0076300_30	COG	COG1511	NA	NA
UHGV-0076300_30	Structural annotation	PF09486, TIGR02559	NA	NA
UHGV-0076300_31	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0076300_31	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0076300_32	PHROG	phrog_13879	NA	unknown function
UHGV-0076300_32	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0076300_32	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0076300_33	PHROG	phrog_18725	NA	unknown function
UHGV-0076300_34	PHROG	phrog_17334	NA	unknown function
UHGV-0076300_34	eggNOG-mapper	1414720.CBYM010000002_gene558	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0076300_34	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0076300_36	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0076300_38	PHROG	phrog_1863	NA	unknown function
UHGV-0076300_38	eggNOG-mapper	1232449.BAHV02000017_gene1511	NA	NA
UHGV-0076300_39	Structural annotation	PF16938	NA	NA
UHGV-0076300_41	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0076300_41	PHROG	phrog_7698	endolysin	lysis
UHGV-0076300_41	UniRef90	UniRef90_A0A4R4FDB0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076300_41	eggNOG-mapper	877411.JMMA01000002_gene2384	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076300_41	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0076300_41	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0076300_41	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0076300_41	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0076300_41	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0076300_42	KOfam	K07707	agrA, blpR, fsrA; two-component system, LytTR family, response regulator AgrA	NA
UHGV-0076300_42	PHROG	phrog_8810	NA	unknown function
UHGV-0076300_42	UniRef90	UniRef90_R6H395	LytTr DNA-binding domain protein	NA
UHGV-0076300_42	eggNOG-mapper	1158608.I583_02773	LytTr DNA-binding domain	NA
UHGV-0076300_42	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0076300_42	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0076300_42	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0076300_42	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA