UHGV-0076318

Genome information

Genome length 37,040 bps

CDS count 55

Completeness 98.20% (high-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076318
vOTU ID	vOTU-014691
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_122618
BioSample	SAMEA2580304
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.20% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.54
Jumbo phage	No

Genome content
Genome length	37,040 bps
GC content	50.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	88.25%
Average CDS length	599.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076318_1	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0076318_1	UniRef90	UniRef90_R6BA25	HTH_59 domain-containing protein	NA
UHGV-0076318_1	eggNOG-mapper	592028.GCWU000321_01370	NA	NA
UHGV-0076318_1	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0076318_1	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0076318_3	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0076318_3	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0076318_3	UniRef90	UniRef90_A0A843H5D3	Type II methyltransferase	NA
UHGV-0076318_3	eggNOG-mapper	1423758.BN55_09485	DNA methylase	NA
UHGV-0076318_3	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0076318_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0076318_3	COG	COG0863	DNA modification methylase	NA
UHGV-0076318_3	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0076318_5	PHROG	phrog_5867	endolysin	lysis
UHGV-0076318_5	UniRef90	UniRef90_A0A3B9DVP3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076318_5	eggNOG-mapper	592028.GCWU000321_01397	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076318_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0076318_5	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0076318_5	Structural annotation	MF_04111	NA	NA
UHGV-0076318_6	Structural annotation	PF10841	NA	NA
UHGV-0076318_7	PHROG	phrog_4105	NA	unknown function
UHGV-0076318_7	eggNOG-mapper	742743.HMPREF9453_00545	NA	NA
UHGV-0076318_9	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0076318_9	COG	COG4675	Phage tail collar domain	NA
UHGV-0076318_10	PHROG	phrog_24267	NA	unknown function
UHGV-0076318_10	UniRef90	UniRef90_UPI00195ED1C3	phage tail protein	NA
UHGV-0076318_10	eggNOG-mapper	742743.HMPREF9453_00547	tail collar domain protein	NA
UHGV-0076318_10	COG	COG4675	Phage tail collar domain	NA
UHGV-0076318_11	Structural annotation	PF21611	NA	NA
UHGV-0076318_12	KOfam	K14059	int; integrase	NA
UHGV-0076318_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0076318_12	UniRef90	UniRef90_A0A3B9DV66	Recombinase XerC	NA
UHGV-0076318_12	eggNOG-mapper	742743.HMPREF9453_00550	Phage integrase family	NA
UHGV-0076318_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076318_12	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0076318_12	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0076318_13	eggNOG-mapper	910314.HMPREF9220_0607	NA	NA
UHGV-0076318_14	PHROG	phrog_1101	tail protein	tail
UHGV-0076318_14	UniRef90	UniRef90_H1CYW4	Phage-tail_3 domain-containing protein	NA
UHGV-0076318_14	eggNOG-mapper	742743.HMPREF9453_00552	Putative phage tail protein	NA
UHGV-0076318_14	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0076318_14	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0076318_14	Structural annotation	PF13550, NF040662, COG4733	NA	NA
UHGV-0076318_15	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0076318_15	PHROG	phrog_329	minor tail protein	tail
UHGV-0076318_15	UniRef90	UniRef90_A0A3B9DUZ7	Hydrolase	NA
UHGV-0076318_15	eggNOG-mapper	742743.HMPREF9453_00553	cysteine-type peptidase activity	NA
UHGV-0076318_15	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0076318_15	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0076318_15	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0076318_16	PHROG	phrog_778	tail assembly protein	tail
UHGV-0076318_16	UniRef90	UniRef90_A0A3B9DWJ4	NA	NA
UHGV-0076318_16	eggNOG-mapper	742743.HMPREF9453_00554	NA	NA
UHGV-0076318_16	Pfam	PF09931	NA	DUF2163
UHGV-0076318_16	COG	COG5449	NA	NA
UHGV-0076318_16	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0076318_17	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0076318_17	UniRef90	UniRef90_UPI000C7C1E73	NA	NA
UHGV-0076318_17	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0076318_17	Pfam	PF09343	NA	DUF2460
UHGV-0076318_17	COG	COG5448	NA	NA
UHGV-0076318_17	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0076318_18	PHROG	phrog_13338	NA	unknown function
UHGV-0076318_18	UniRef90	UniRef90_H1CYW8	Tape measure domain-containing protein	NA
UHGV-0076318_18	eggNOG-mapper	742743.HMPREF9453_00556	tape measure	NA
UHGV-0076318_18	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0076318_18	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0076318_20	PHROG	phrog_1407	major tail protein	tail
UHGV-0076318_20	UniRef90	UniRef90_UPI00034E16F7	phage tail tube protein	NA
UHGV-0076318_20	eggNOG-mapper	1262914.BN533_00191	Phage tail tube protein	NA
UHGV-0076318_20	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0076318_20	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0076318_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0076318_21	Structural annotation	PF16807	NA	NA
UHGV-0076318_22	UniRef90	UniRef90_UPI00034E17BA	head-tail adaptor protein	NA
UHGV-0076318_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0076318_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0076318_23	UniRef90	UniRef90_H1CYX3	HK97 family phage major capsid protein	NA
UHGV-0076318_23	eggNOG-mapper	742743.HMPREF9453_00561	Phage capsid family	NA
UHGV-0076318_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0076318_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0076318_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0076318_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0076318_25	Pfam	PF11836	Phage tail tube protein, GTA-gp10	Phage_TAC_11
UHGV-0076318_25	Structural annotation	PF19591	NA	NA
UHGV-0076318_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0076318_26	UniRef90	UniRef90_UPI00094F25F3	phage portal protein	NA
UHGV-0076318_26	eggNOG-mapper	742743.HMPREF9453_00564	Phage portal protein, HK97 family	NA
UHGV-0076318_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0076318_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0076318_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0076318_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0076318_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0076318_27	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0076318_27	UniRef90	UniRef90_UPI000FF6F232	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0076318_27	eggNOG-mapper	742743.HMPREF9453_00565	serine-type endopeptidase activity	NA
UHGV-0076318_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0076318_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0076318_27	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0076318_28	UniRef90	UniRef90_UPI00094F3068	head-tail connector protein	NA
UHGV-0076318_28	eggNOG-mapper	469617.FUAG_00838	Phage gp6-like head-tail connector protein	NA
UHGV-0076318_28	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0076318_28	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0076318_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0076318_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0076318_29	UniRef90	UniRef90_UPI0008D9BB34	terminase large subunit	NA
UHGV-0076318_29	eggNOG-mapper	742743.HMPREF9453_00567	large subunit	NA
UHGV-0076318_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0076318_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0076318_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0076318_29	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0076318_30	UniRef90	UniRef90_UPI0008D9916E	NA	NA
UHGV-0076318_30	eggNOG-mapper	469617.FUAG_01834	HNH nucleases	NA
UHGV-0076318_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076318_34	eggNOG-mapper	679201.HMPREF9334_00314	NA	NA
UHGV-0076318_34	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0076318_35	UniRef90	UniRef90_A0A3B9DVA1	MYND-type domain-containing protein	NA
UHGV-0076318_36	PHROG	phrog_16126	NA	unknown function
UHGV-0076318_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0076318_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076318_37	UniRef90	UniRef90_R6AUC5	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0076318_37	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0076318_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0076318_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0076318_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0076318_41	Structural annotation	PF05406	NA	NA
UHGV-0076318_42	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0076318_42	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0076318_42	UniRef90	UniRef90_R6AUC1	Primase C-terminal domain protein	NA
UHGV-0076318_42	eggNOG-mapper	1273103.NM10_06846	Primase C terminal 2 (PriCT-2)	NA
UHGV-0076318_42	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0076318_42	Pfam	PF13481	AAA domain	AAA_25
UHGV-0076318_42	COG	COG3598	RecA-family ATPase	NA
UHGV-0076318_42	Structural annotation	PF13481, PF08707, MF_00348, NF004384, NF040561, COG3598, COG1467	NA	NA
UHGV-0076318_43	PHROG	phrog_2698	NA	unknown function
UHGV-0076318_43	Structural annotation	PF05037, NF007495	NA	NA
UHGV-0076318_44	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0076318_44	UniRef90	UniRef90_UPI000F633C17	ATP-binding protein	NA
UHGV-0076318_44	eggNOG-mapper	910314.HMPREF9220_0634	AAA domain	NA
UHGV-0076318_44	Pfam	PF13479	AAA domain	AAA_24
UHGV-0076318_44	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0076318_45	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0076318_45	UniRef90	UniRef90_R6ADZ8	Siphovirus Gp157	NA
UHGV-0076318_45	eggNOG-mapper	910314.HMPREF9220_0635	Siphovirus Gp157	NA
UHGV-0076318_45	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0076318_45	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0076318_48	Structural annotation	PF17600	NA	NA
UHGV-0076318_51	UniRef90	UniRef90_R6AUB3	HTH_17 domain-containing protein	NA
UHGV-0076318_51	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0076318_51	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0076318_51	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0076318_53	UniRef90	UniRef90_A0A3B9DWG3	XRE family transcriptional regulator	NA
UHGV-0076318_53	eggNOG-mapper	997346.HMPREF9374_3915	Helix-turn-helix XRE-family like proteins	NA
UHGV-0076318_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076318_53	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0076318_54	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0076318_54	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0076318_54	UniRef90	UniRef90_A0A3B9DVE9	Repressor LexA	NA
UHGV-0076318_54	eggNOG-mapper	910314.HMPREF9220_1115	Peptidase S24-like	NA
UHGV-0076318_54	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0076318_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076318_54	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0076318_54	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0076318_54	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0076318_55	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0076318_55	UniRef90	UniRef90_A0A3D2VK45	CAAX protease	NA
UHGV-0076318_55	eggNOG-mapper	877421.AUJT01000010_gene547	Abi-like protein	NA
UHGV-0076318_55	PADLOC	AbiD	AbiD	Abi
UHGV-0076318_55	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0076318_55	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0076318_55	Structural annotation	PF07751, COG4823	NA	NA