UHGV-0076319

Genome information

Genome length 42,355 bps

CDS count 74

Completeness 99.88% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076319
vOTU ID	vOTU-068973
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_122616
BioSample	SAMEA2580304
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.88% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.65
Jumbo phage	No

Genome content
Genome length	42,355 bps
GC content	54.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	88.44%
Average CDS length	509.68 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076319_1	PHROG	phrog_4433	NA	unknown function
UHGV-0076319_1	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0076319_1	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0076319_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0076319_4	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0076319_4	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0076319_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0076319_5	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0076319_5	UniRef90	UniRef90_UPI00137B411D	ORF6C domain-containing protein	NA
UHGV-0076319_5	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0076319_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0076319_5	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0076319_5	COG	COG3617	Prophage antirepressor	NA
UHGV-0076319_5	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0076319_8	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0076319_8	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0076319_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076319_9	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0076319_9	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0076319_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076319_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076319_9	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0076319_10	Structural annotation	PF21715, NF008122, COG1846	NA	NA
UHGV-0076319_12	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0076319_12	UniRef90	UniRef90_UPI000F643789	Ltp family lipoprotein	NA
UHGV-0076319_12	eggNOG-mapper	428127.EUBDOL_01530	Host cell surface-exposed lipoprotein	NA
UHGV-0076319_12	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0076319_12	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0076319_12	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0076319_12	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0076319_15	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0076319_15	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0076319_15	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0076319_16	KOfam	K14059	int; integrase	NA
UHGV-0076319_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0076319_16	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0076319_16	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0076319_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076319_16	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0076319_16	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0076319_18	Structural annotation	PF12510	NA	NA
UHGV-0076319_19	PHROG	phrog_20016	NA	unknown function
UHGV-0076319_19	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0076319_19	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0076319_19	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0076319_20	PHROG	phrog_16490	NA	unknown function
UHGV-0076319_20	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0076319_21	PHROG	phrog_22984	NA	unknown function
UHGV-0076319_22	PHROG	phrog_21718	NA	unknown function
UHGV-0076319_22	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0076319_23	PHROG	phrog_3754	NA	unknown function
UHGV-0076319_23	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0076319_24	UniRef90	UniRef90_A0A845R8K0	CopG family transcriptional regulator	NA
UHGV-0076319_24	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-0076319_24	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0076319_24	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0076319_25	Structural annotation	PF07342	NA	NA
UHGV-0076319_26	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0076319_26	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0076319_26	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0076319_26	eggNOG-mapper	947981.E9LUT0_9CAUD	DNA binding	NA
UHGV-0076319_26	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0076319_26	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0076319_26	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0076319_26	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0076319_28	PHROG	phrog_15303	NA	unknown function
UHGV-0076319_30	KOfam	K07273	acm; lysozyme	NA
UHGV-0076319_30	PHROG	phrog_291	endolysin	lysis
UHGV-0076319_30	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0076319_30	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0076319_30	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0076319_30	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0076319_30	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0076319_31	PHROG	phrog_1382	NA	unknown function
UHGV-0076319_31	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0076319_32	eggNOG-mapper	457412.RSAG_04672	NA	NA
UHGV-0076319_33	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0076319_33	PHROG	phrog_17147	NA	unknown function
UHGV-0076319_33	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0076319_33	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0076319_33	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0076319_34	UniRef90	UniRef90_UPI001D07AB37	XkdX family protein	NA
UHGV-0076319_34	eggNOG-mapper	718252.FP2_16990	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0076319_34	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0076319_34	Structural annotation	PF09693	NA	NA
UHGV-0076319_36	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0076319_36	UniRef90	UniRef90_A0A1Q6KPN8	NA	NA
UHGV-0076319_36	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0076319_36	Structural annotation	PF19789, PF18911	NA	NA
UHGV-0076319_38	PHROG	phrog_3558	tail protein	tail
UHGV-0076319_38	UniRef90	UniRef90_A0A844DGT5	Prophage_tail domain-containing protein	NA
UHGV-0076319_38	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-0076319_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0076319_38	COG	COG4926	Phage-related protein	NA
UHGV-0076319_38	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0076319_39	UniRef90	UniRef90_A0A7G9WF98	MtfA protein	NA
UHGV-0076319_39	eggNOG-mapper	1111121.HMPREF1247_1241	NA	NA
UHGV-0076319_39	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0076319_40	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0076319_40	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0076319_40	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0076319_40	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0076319_40	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0076319_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0076319_40	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0076319_43	PHROG	phrog_885	major tail protein	tail
UHGV-0076319_43	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0076319_43	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0076319_44	Structural annotation	PF13554	NA	NA
UHGV-0076319_45	PHROG	phrog_17977	NA	unknown function
UHGV-0076319_45	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0076319_45	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0076319_47	PHROG	phrog_544	major head protein	head and packaging
UHGV-0076319_47	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0076319_47	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0076319_47	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0076319_48	Structural annotation	PF06810	NA	NA
UHGV-0076319_49	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076319_49	UniRef90	UniRef90_A0A380IPI2	AP2 domain protein	NA
UHGV-0076319_49	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-0076319_50	Structural annotation	PF07342	NA	NA
UHGV-0076319_51	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0076319_51	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-0076319_51	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0076319_52	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0076319_52	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0076319_52	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0076319_52	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0076319_52	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0076319_53	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0076319_53	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0076319_53	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-0076319_53	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0076319_53	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0076319_53	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0076319_53	COG	COG3617	Prophage antirepressor	NA
UHGV-0076319_53	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0076319_55	Structural annotation	PF07342	NA	NA
UHGV-0076319_57	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0076319_57	UniRef90	UniRef90_A0A2V2FGW5	XRE family transcriptional regulator	NA
UHGV-0076319_57	eggNOG-mapper	1378168.N510_01451	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0076319_57	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0076319_57	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0076319_58	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0076319_58	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0076319_58	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0076319_58	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0076319_58	COG	COG2369	NA	NA
UHGV-0076319_58	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0076319_60	PHROG	phrog_64	portal protein	head and packaging
UHGV-0076319_60	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0076319_60	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0076319_60	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0076319_60	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0076319_61	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076319_61	PHROG	phrog_10250	NA	unknown function
UHGV-0076319_61	UniRef90	UniRef90_A0A3D1J9A3	PBSX family phage terminase large subunit (Fragment)	NA
UHGV-0076319_61	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0076319_61	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0076319_61	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076319_61	Structural annotation	PF20441, MF_04145, TIGR01547, COG5323	NA	NA
UHGV-0076319_62	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076319_62	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0076319_62	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0076319_62	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0076319_62	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0076319_62	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076319_62	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076319_62	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0076319_63	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0076319_63	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0076319_63	Structural annotation	PF04218	NA	NA
UHGV-0076319_64	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076319_64	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0076319_66	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0076319_66	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076319_66	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0076319_66	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0076319_66	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0076319_66	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0076319_66	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0076319_67	PHROG	phrog_3136	NA	unknown function
UHGV-0076319_67	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0076319_67	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0076319_67	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0076319_67	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA
UHGV-0076319_69	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0076319_69	UniRef90	UniRef90_UPI001CBD79D0	DNA cytosine methyltransferase	NA
UHGV-0076319_69	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0076319_69	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0076319_69	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0076319_71	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0076319_72	Structural annotation	PF11417	NA	NA
UHGV-0076319_73	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0076319_73	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0076319_73	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-0076319_73	eggNOG-mapper	877411.JMMA01000002_gene2292	NA	NA
UHGV-0076319_73	Pfam	PF19808	NA	DUF6291
UHGV-0076319_73	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0076319_73	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0076319_73	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0076319_74	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0076319_74	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0076319_74	COG	COG0629	Single-stranded DNA-binding protein	NA