UHGV-0076322

Genome information

vOTU vOTU-019168

Genome length 31,323 bps

CDS count 51

Completeness 89.51% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076322
vOTU ID	vOTU-019168
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_132458
BioSample	SAMEA2737784
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.56
Jumbo phage	No

Genome content
Genome length	31,323 bps
GC content	58.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.93%
Average CDS length	585.77 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076322_1	PHROG	phrog_9534	head protein	head and packaging
UHGV-0076322_1	UniRef90	UniRef90_A0A2X0ZY62	Phage structural protein, truncation	NA
UHGV-0076322_1	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0076322_1	Structural annotation	PF21567	NA	NA
UHGV-0076322_2	PHROG	phrog_538	minor tail protein	tail
UHGV-0076322_2	UniRef90	UniRef90_UPI001C0C4E4F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0076322_2	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0076322_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0076322_2	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0076322_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0076322_3	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-0076322_3	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0076322_3	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0076322_4	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0076322_4	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0076322_4	COG	COG1511	NA	NA
UHGV-0076322_5	Structural annotation	PF17318	NA	NA
UHGV-0076322_6	PHROG	phrog_1526	NA	unknown function
UHGV-0076322_6	UniRef90	UniRef90_F3MWB0	NA	NA
UHGV-0076322_7	PHROG	phrog_117	major tail protein	tail
UHGV-0076322_7	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0076322_7	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0076322_7	COG	COG5492	NA	NA
UHGV-0076322_7	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0076322_8	PHROG	phrog_123	tail terminator	connector
UHGV-0076322_8	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0076322_8	Structural annotation	PF06141	NA	NA
UHGV-0076322_9	PHROG	phrog_387	neck protein	connector
UHGV-0076322_9	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0076322_10	PHROG	phrog_501	head closure Hc1	connector
UHGV-0076322_10	UniRef90	UniRef90_R6CEU4	NA	NA
UHGV-0076322_10	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0076322_10	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0076322_11	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0076322_11	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0076322_11	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0076322_11	Structural annotation	PF09355	NA	NA
UHGV-0076322_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0076322_12	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0076322_12	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0076322_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0076322_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0076322_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0076322_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0076322_13	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0076322_13	UniRef90	UniRef90_UPI001C03A2F1	NA	NA
UHGV-0076322_13	eggNOG-mapper	1123263.AUKY01000068_gene501	NA	NA
UHGV-0076322_13	Structural annotation	PF14265	NA	NA
UHGV-0076322_14	PHROG	phrog_918	NA	unknown function
UHGV-0076322_14	UniRef90	UniRef90_UPI000F794B8B	NA	NA
UHGV-0076322_14	eggNOG-mapper	298338.Q5ULN6_9CAUD	NA	NA
UHGV-0076322_14	Pfam	PF19791	NA	DUF6275
UHGV-0076322_14	Structural annotation	PF19791	NA	NA
UHGV-0076322_16	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0076322_16	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0076322_16	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0076322_16	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0076322_16	Structural annotation	PF20344	NA	NA
UHGV-0076322_17	PHROG	phrog_104	portal protein	head and packaging
UHGV-0076322_17	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0076322_17	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0076322_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0076322_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0076322_18	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0076322_18	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0076322_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0076322_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0076322_18	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0076322_19	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0076322_19	Structural annotation	PF19962	NA	NA
UHGV-0076322_20	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076322_20	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0076322_20	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0076322_20	Structural annotation	PF01844	NA	NA
UHGV-0076322_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076322_21	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0076322_21	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0076322_21	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0076322_22	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0076322_22	UniRef90	UniRef90_A0A6L5TFB3	Radical SAM protein	NA
UHGV-0076322_22	eggNOG-mapper	1235798.C817_05514	NA	NA
UHGV-0076322_22	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0076322_22	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0076322_23	UniRef90	UniRef90_UPI000CF85C21	NA	NA
UHGV-0076322_25	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0076322_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076322_25	UniRef90	UniRef90_A0A6F9WVF6	Transcriptional regulator	NA
UHGV-0076322_25	eggNOG-mapper	1235790.C805_00648	Helix-turn-helix XRE-family like proteins	NA
UHGV-0076322_25	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0076322_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076322_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076322_25	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0076322_26	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0076322_26	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0076322_26	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0076322_26	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0076322_26	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0076322_26	COG	COG0305	Replicative DNA helicase	NA
UHGV-0076322_26	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0076322_27	PHROG	phrog_15768	NA	unknown function
UHGV-0076322_27	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0076322_27	eggNOG-mapper	929704.Myrod_0677	NA	NA
UHGV-0076322_27	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0076322_27	Structural annotation	PF01978, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0076322_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076322_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076322_28	UniRef90	UniRef90_A0A3E2U1Y5	Single-stranded DNA-binding protein	NA
UHGV-0076322_28	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0076322_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076322_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076322_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076322_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076322_28	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0076322_29	PHROG	phrog_7566	NA	unknown function
UHGV-0076322_29	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0076322_32	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0076322_32	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0076322_32	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0076322_33	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0076322_38	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0076322_40	UniRef90	UniRef90_A0A2A7BGV7	HTH cro/C1-type domain-containing protein	NA
UHGV-0076322_40	Pfam	PF05339	NA	DUF739
UHGV-0076322_40	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0076322_40	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0076322_42	PHROG	phrog_3777	NA	unknown function
UHGV-0076322_42	UniRef90	UniRef90_A0A396LZ12	NA	NA
UHGV-0076322_42	Pfam	PF12957	NA	DUF3846
UHGV-0076322_42	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0076322_42	Structural annotation	PF12957	NA	NA
UHGV-0076322_43	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0076322_44	UniRef90	UniRef90_A0A1Y3WR65	Transcriptional regulator	NA
UHGV-0076322_44	eggNOG-mapper	279010.BL00668	Helix-turn-helix XRE-family like proteins	NA
UHGV-0076322_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076322_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0076322_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0076322_45	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0076322_45	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0076322_45	UniRef90	UniRef90_A0A1Y3WR87	Repressor LexA	NA
UHGV-0076322_45	eggNOG-mapper	718252.FP2_25580	NA	NA
UHGV-0076322_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0076322_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076322_45	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0076322_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0076322_45	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0076322_47	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0076322_47	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0076322_47	UniRef90	UniRef90_A0A174XM30	Exonuclease RNase T and DNA polymerase III	NA
UHGV-0076322_47	eggNOG-mapper	1123288.SOV_2c03960	DNA polymerase III	NA
UHGV-0076322_47	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0076322_47	Pfam	PF14020	NA	DUF4236
UHGV-0076322_47	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0076322_47	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0076322_47	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0076322_47	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0076322_48	UniRef90	UniRef90_A0A2A6Z732	Cell filamentation protein Fic	NA
UHGV-0076322_48	eggNOG-mapper	1035196.HMPREF9998_00638	Virulence protein RhuM family	NA
UHGV-0076322_48	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0076322_48	COG	COG3943	NA	NA
UHGV-0076322_48	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0076322_49	KOfam	K14059	int; integrase	NA
UHGV-0076322_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0076322_49	UniRef90	UniRef90_A0A316RZQ6	Tyr recombinase domain-containing protein	NA
UHGV-0076322_49	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0076322_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076322_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076322_49	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0076322_51	UniRef90	UniRef90_A0A3D4W125	Hydratase (Fragment)	NA
UHGV-0076322_51	eggNOG-mapper	748224.HMPREF9436_00126	aconitate hydratase	NA
UHGV-0076322_51	COG	COG1048	Aconitase A	NA