UHGV-0076326

Genome information

Genome length 42,921 bps

CDS count 79

Completeness 69.89% (medium-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076326
vOTU ID	vOTU-040668
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_137215
BioSample	SAMEA2737670
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.21
Jumbo phage	No

Genome content
Genome length	42,921 bps
GC content	38.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	86.23%
Average CDS length	472.82 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076326_1	PHROG	phrog_5824	NA	unknown function
UHGV-0076326_1	eggNOG-mapper	357276.EL88_11320	NA	NA
UHGV-0076326_2	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0076326_2	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0076326_2	UniRef90	UniRef90_I9RI60	HTH cro/C1-type domain-containing protein	NA
UHGV-0076326_2	eggNOG-mapper	435591.BDI_0882	Helix-turn-helix domain	NA
UHGV-0076326_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076326_2	COG	COG5499	Antitoxin component HigA of the HigAB toxin-antitoxin module, contains an N-terminal HTH domain	NA
UHGV-0076326_2	Structural annotation	PF01381, MF_00535, NF041951, COG5499	NA	NA
UHGV-0076326_3	KOfam	K19166	higB; mRNA interferase HigB [EC:3.1.-.-]	NA
UHGV-0076326_3	PHROG	phrog_5734	NA	unknown function
UHGV-0076326_3	UniRef90	UniRef90_A0A8D9PF81	Toxin	NA
UHGV-0076326_3	eggNOG-mapper	435591.BDI_0881	HigB_toxin, RelE-like toxic component of a toxin-antitoxin system	NA
UHGV-0076326_3	Pfam	PF09907	HigB_toxin, RelE-like toxic component of a toxin-antitoxin system	HigB_toxin
UHGV-0076326_3	COG	COG4680	mRNA-degrading endonuclease (mRNA interferase) HigB, toxic component of the HigAB toxin-antitoxin module	NA
UHGV-0076326_3	Structural annotation	PF09907, TIGR00053, COG4680	NA	NA
UHGV-0076326_6	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0076326_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076326_6	UniRef90	UniRef90_A0A0P0G790	Helix-turn-helix protein	NA
UHGV-0076326_6	eggNOG-mapper	1268240.ATFI01000020_gene146	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0076326_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076326_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076326_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0076326_7	PHROG	phrog_1086	NA	unknown function
UHGV-0076326_7	UniRef90	UniRef90_A0A3E4X246	NA	NA
UHGV-0076326_7	eggNOG-mapper	1268240.ATFI01000020_gene145	WYL_2, Sm-like SH3 beta-barrel fold	NA
UHGV-0076326_7	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-0076326_7	Structural annotation	PF10902	NA	NA
UHGV-0076326_8	UniRef90	UniRef90_D4VDX3	Conserved domain protein	NA
UHGV-0076326_9	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076326_9	UniRef90	UniRef90_UPI001C3801D7	NUMOD4 domain-containing protein	NA
UHGV-0076326_9	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-0076326_9	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0076326_9	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0076326_9	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0076326_9	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0076326_10	PHROG	phrog_64	portal protein	head and packaging
UHGV-0076326_10	UniRef90	UniRef90_A7AF56	Putative phage portal protein, SPP1 family	NA
UHGV-0076326_10	eggNOG-mapper	411477.PARMER_02046	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0076326_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0076326_10	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0076326_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076326_11	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0076326_11	UniRef90	UniRef90_F7LU77	PBSX family phage terminase, large subunit	NA
UHGV-0076326_11	eggNOG-mapper	585543.HMPREF0969_03368	Phage terminase, large subunit, PBSX family	NA
UHGV-0076326_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0076326_11	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0076326_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076326_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076326_11	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0076326_12	eggNOG-mapper	411477.PARMER_02048	NA	NA
UHGV-0076326_13	PHROG	phrog_9353	NA	unknown function
UHGV-0076326_13	UniRef90	UniRef90_UPI001AC9C54A	DNA methylase	NA
UHGV-0076326_13	eggNOG-mapper	585502.HMPREF0645_2649	DNA binding	NA
UHGV-0076326_13	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0076326_13	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0076326_14	UniRef90	UniRef90_A0A139JVG1	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0076326_14	eggNOG-mapper	679190.HMPREF0650_0370	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0076326_14	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0076326_14	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0076326_14	Structural annotation	PF01507, MF_00063, TIGR02057, COG0175	NA	NA
UHGV-0076326_16	PHROG	phrog_625	NA	unknown function
UHGV-0076326_16	UniRef90	UniRef90_A0A6H0KSW6	ASCH domain-containing protein	NA
UHGV-0076326_16	eggNOG-mapper	585502.HMPREF0645_2651	NA	NA
UHGV-0076326_16	Structural annotation	PF04322, COG1935	NA	NA
UHGV-0076326_17	UniRef90	UniRef90_A0A4S2AL39	NA	NA
UHGV-0076326_17	eggNOG-mapper	585543.HMPREF0969_03374	NA	NA
UHGV-0076326_17	Pfam	PF12989	NA	DUF3873
UHGV-0076326_17	Structural annotation	PF12989, NF041597	NA	NA
UHGV-0076326_19	eggNOG-mapper	357276.EL88_11385	NA	NA
UHGV-0076326_19	Structural annotation	PF06718	NA	NA
UHGV-0076326_21	PHROG	phrog_10608	NA	unknown function
UHGV-0076326_21	eggNOG-mapper	357276.EL88_11400	NA	NA
UHGV-0076326_23	PHROG	phrog_38368	NA	unknown function
UHGV-0076326_23	eggNOG-mapper	357276.EL88_11410	NA	NA
UHGV-0076326_23	Structural annotation	NF004687	NA	NA
UHGV-0076326_25	UniRef90	UniRef90_A0A415IS58	LacI family DNA-binding transcriptional regulator	NA
UHGV-0076326_25	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0076326_26	PHROG	phrog_9236	pyrophosphatase	other
UHGV-0076326_26	eggNOG-mapper	1122971.BAME01000163_gene6622	NA	NA
UHGV-0076326_26	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0076326_29	PHROG	phrog_874	NA	unknown function
UHGV-0076326_29	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0076326_29	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0076326_30	eggNOG-mapper	657309.BXY_08540	NA	NA
UHGV-0076326_31	PHROG	phrog_12005	NA	unknown function
UHGV-0076326_32	eggNOG-mapper	411901.BACCAC_01173	NA	NA
UHGV-0076326_34	Structural annotation	PF13783, MF_01054	NA	NA
UHGV-0076326_36	UniRef90	UniRef90_A0A413J5B9	NA	NA
UHGV-0076326_36	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-0076326_36	Pfam	PF04448	NA	DUF551
UHGV-0076326_36	Structural annotation	NF041588	NA	NA
UHGV-0076326_39	Structural annotation	PF20020	NA	NA
UHGV-0076326_41	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0076326_41	UniRef90	UniRef90_A0A412Z5E6	PAPS_reduct domain-containing protein	NA
UHGV-0076326_41	eggNOG-mapper	1347393.HG726021_gene401	NA	NA
UHGV-0076326_41	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0076326_41	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0076326_42	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0076326_42	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0076326_42	UniRef90	UniRef90_I9RH12	Helicase ATP-binding domain-containing protein	NA
UHGV-0076326_42	eggNOG-mapper	357276.EL88_11455	DNA methylase	NA
UHGV-0076326_42	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0076326_42	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0076326_42	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0076326_42	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0076326_42	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0076326_42	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0076326_43	eggNOG-mapper	1347393.HG726022_gene3594	NA	NA
UHGV-0076326_44	PHROG	phrog_19578	NA	unknown function
UHGV-0076326_44	eggNOG-mapper	1268240.ATFI01000007_gene437	NA	NA
UHGV-0076326_44	Structural annotation	PF09827, MF_01471	NA	NA
UHGV-0076326_45	PHROG	phrog_35728	NA	unknown function
UHGV-0076326_45	UniRef90	UniRef90_F3QQU4	Conserved domain protein	NA
UHGV-0076326_45	eggNOG-mapper	1121100.JCM6294_533	NA	NA
UHGV-0076326_45	Structural annotation	PF20338	NA	NA
UHGV-0076326_46	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0076326_46	eggNOG-mapper	1121100.JCM6294_532	DnaD domain protein	NA
UHGV-0076326_46	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0076326_46	Structural annotation	PF20024, MF_01819, NF040642, COG0640	NA	NA
UHGV-0076326_47	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0076326_47	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0076326_47	UniRef90	UniRef90_UPI001C03709F	DEAD/DEAH box helicase	NA
UHGV-0076326_47	eggNOG-mapper	357276.EL88_11480	helicase superfamily c-terminal domain	NA
UHGV-0076326_47	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-0076326_47	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0076326_47	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0076326_47	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0076326_47	Structural annotation	PF18766, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0076326_48	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076326_48	UniRef90	UniRef90_UPI000E4AE634	recombination protein NinG	NA
UHGV-0076326_48	eggNOG-mapper	357276.EL88_11490	Bacteriophage Lambda NinG protein	NA
UHGV-0076326_48	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0076326_48	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0076326_48	Structural annotation	PF05766	NA	NA
UHGV-0076326_50	PHROG	phrog_35807	NA	unknown function
UHGV-0076326_50	UniRef90	UniRef90_A0A3E4KJL2	RNA polymerase subunit sigma	NA
UHGV-0076326_50	eggNOG-mapper	357276.EL88_11505	RNA polymerase activity	NA
UHGV-0076326_50	COG	COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA
UHGV-0076326_50	Structural annotation	PF14902	NA	NA
UHGV-0076326_51	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0076326_51	eggNOG-mapper	357276.EL88_11510	NA	NA
UHGV-0076326_51	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0076326_52	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076326_52	UniRef90	UniRef90_UPI001B8C08D0	NA	NA
UHGV-0076326_52	eggNOG-mapper	357276.EL88_11515	NA	NA
UHGV-0076326_52	Pfam	PF11325	NA	DUF3127
UHGV-0076326_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076326_52	Structural annotation	PF11325, MF_00720, NF005241, COG2965	NA	NA
UHGV-0076326_53	PHROG	phrog_35319	NA	unknown function
UHGV-0076326_53	UniRef90	UniRef90_UPI001106702F	HNH endonuclease	NA
UHGV-0076326_53	eggNOG-mapper	357276.EL88_11525	NA	NA
UHGV-0076326_53	Structural annotation	PF10926, MF_03030	NA	NA
UHGV-0076326_54	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0076326_54	UniRef90	UniRef90_A0A380Z5W5	ATP-binding protein	NA
UHGV-0076326_54	eggNOG-mapper	357276.EL88_11530	AAA domain	NA
UHGV-0076326_54	Pfam	PF13479	AAA domain	AAA_24
UHGV-0076326_54	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0076326_54	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0076326_55	UniRef90	UniRef90_A0A414JTI6	DNA-binding protein	NA
UHGV-0076326_55	eggNOG-mapper	1347393.HG726021_gene520	Helix-turn-helix domain	NA
UHGV-0076326_55	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0076326_55	COG	COG0789	DNA-binding transcriptional regulator, MerR family	NA
UHGV-0076326_55	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-0076326_56	UniRef90	UniRef90_A0A4S2AZ55	DNA-binding response regulator	NA
UHGV-0076326_56	eggNOG-mapper	357276.EL88_11540	response regulator	NA
UHGV-0076326_56	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0076326_56	Structural annotation	PF00196, COG2771	NA	NA
UHGV-0076326_58	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076326_58	UniRef90	UniRef90_UPI0011DDA6C0	NUMOD4 domain-containing protein	NA
UHGV-0076326_58	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0076326_58	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0076326_58	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0076326_58	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0076326_58	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0076326_59	PHROG	phrog_11581	NA	unknown function
UHGV-0076326_59	eggNOG-mapper	457424.BFAG_02391	NA	NA
UHGV-0076326_60	PHROG	phrog_11581	NA	unknown function
UHGV-0076326_60	eggNOG-mapper	470145.BACCOP_01179	NA	NA
UHGV-0076326_65	PHROG	phrog_1086	NA	unknown function
UHGV-0076326_65	UniRef90	UniRef90_F7LUB3	NA	NA
UHGV-0076326_65	eggNOG-mapper	357276.EL88_11565	WYL_2, Sm-like SH3 beta-barrel fold	NA
UHGV-0076326_65	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-0076326_67	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0076326_67	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0076326_67	UniRef90	UniRef90_A0A3E5I171	S24 family peptidase	NA
UHGV-0076326_67	eggNOG-mapper	357276.EL88_11575	Transcriptional regulator	NA
UHGV-0076326_67	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0076326_67	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0076326_67	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0076326_68	PHROG	phrog_2598	NA	unknown function
UHGV-0076326_68	UniRef90	UniRef90_UPI0002692C2F	NA	NA
UHGV-0076326_68	eggNOG-mapper	357276.EL88_11580	NA	NA
UHGV-0076326_68	PADLOC	REase_II_00020	Type II restriction enzyme	RM
UHGV-0076326_68	Pfam	PF03235	NA	DUF262
UHGV-0076326_68	COG	COG1479	NA	NA
UHGV-0076326_68	Structural annotation	PF14072, TIGR04285, COG1479	NA	NA
UHGV-0076326_69	PHROG	phrog_3846	NA	unknown function
UHGV-0076326_69	UniRef90	UniRef90_UPI0002692C30	MAE_28990/MAE_18760 family HEPN-like nuclease	NA
UHGV-0076326_69	eggNOG-mapper	357276.EL88_11585	NA	NA
UHGV-0076326_69	Pfam	PF18735	RiboL-PSP-HEPN	HEPN_RiboL-PSP
UHGV-0076326_69	Structural annotation	PF18735	NA	NA
UHGV-0076326_70	eggNOG-mapper	585543.HMPREF0969_03379	NA	NA
UHGV-0076326_71	eggNOG-mapper	762984.HMPREF9445_00810	NA	NA
UHGV-0076326_72	KOfam	K19052	hepC; heparan-sulfate lyase [EC:4.2.2.8]	NA
UHGV-0076326_72	UniRef90	UniRef90_F3PFP0	Heparinase II/III-like protein	NA
UHGV-0076326_72	eggNOG-mapper	762984.HMPREF9445_00811	Heparinase II III-like protein	NA
UHGV-0076326_72	Pfam	PF16889	Heparinase II/III N-terminus	Hepar_II_III_N
UHGV-0076326_72	Pfam	PF07940	Heparinase II/III-like protein	Hepar_II_III
UHGV-0076326_72	COG	COG5434	Polygalacturonase	NA
UHGV-0076326_75	KOfam	K07488	K07488; transposase	NA
UHGV-0076326_75	PHROG	phrog_25593	NA	unknown function
UHGV-0076326_75	UniRef90	UniRef90_UPI0011DCB56B	IS1595 family transposase	NA
UHGV-0076326_75	eggNOG-mapper	1121129.KB903369_gene896	ISXO2-like transposase domain	NA
UHGV-0076326_75	Pfam	PF12762	ISXO2-like transposase domain	DDE_Tnp_IS1595
UHGV-0076326_75	NCBIFam	NF033547.1	IS1595 family transposase	NA
UHGV-0076326_75	COG	COG3677	Transposase InsA	NA
UHGV-0076326_75	Structural annotation	PF12762, PF12760, NF033547, TIGR00280, COG3316, COG1997	NA	NA
UHGV-0076326_76	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0076326_76	UniRef90	UniRef90_UPI001896D932	KilA-N domain-containing protein	NA
UHGV-0076326_76	eggNOG-mapper	1235803.C825_05323	KilA-N domain	NA
UHGV-0076326_76	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0076326_76	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0076326_77	eggNOG-mapper	667015.Bacsa_0524	NA	NA