UHGV-0076386

Genome information

Genome length 30,028 bps

CDS count 33

Completeness 75.35% (medium-quality)

geNomad score 0.9605

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076386
vOTU ID	vOTU-022753
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_111538
BioSample	SAMEA2580019
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9605
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.67
Jumbo phage	No

Genome content
Genome length	30,028 bps
GC content	42.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	90.13%
Average CDS length	822.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076386_2	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076386_2	UniRef90	UniRef90_UPI0004D513C4	HNH endonuclease	NA
UHGV-0076386_2	eggNOG-mapper	1416012.V5UQG0_9CAUD	HNH endonuclease	NA
UHGV-0076386_2	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0076386_2	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0076386_3	eggNOG-mapper	568703.LGG_01542	NA	NA
UHGV-0076386_4	eggNOG-mapper	568703.LGG_01542	NA	NA
UHGV-0076386_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076386_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076386_5	UniRef90	UniRef90_UPI0004D95114	single-stranded DNA-binding protein	NA
UHGV-0076386_5	eggNOG-mapper	1423732.BALS01000055_gene2723	Single-strand binding protein family	NA
UHGV-0076386_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076386_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076386_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076386_5	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0076386_6	PHROG	phrog_25061	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076386_6	UniRef90	UniRef90_A0A829H7N3	Phage-related HNH nuclease	NA
UHGV-0076386_6	eggNOG-mapper	568703.LGG_01540	HNH nucleases	NA
UHGV-0076386_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0076386_6	Structural annotation	PF05766	NA	NA
UHGV-0076386_10	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-0076386_10	UniRef90	UniRef90_UPI001CC028D9	SAM-dependent DNA methyltransferase	NA
UHGV-0076386_10	eggNOG-mapper	386043.lwe1202	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0076386_10	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0076386_11	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0076386_11	UniRef90	UniRef90_A0A7S7JGC6	Phage terminase small subunit	NA
UHGV-0076386_11	eggNOG-mapper	568703.LGG_01536	Phage terminase, small subunit	NA
UHGV-0076386_11	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0076386_11	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0076386_11	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0076386_11	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0076386_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0076386_12	UniRef90	UniRef90_A0A7S7JHB8	Phage terminase large subunit	NA
UHGV-0076386_12	eggNOG-mapper	568703.LGG_01535	Phage Terminase	NA
UHGV-0076386_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0076386_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0076386_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0076386_12	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0076386_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0076386_13	UniRef90	UniRef90_A0A5R8LK59	Phage portal protein	NA
UHGV-0076386_13	eggNOG-mapper	568703.LGG_01534	Phage portal protein	NA
UHGV-0076386_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0076386_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0076386_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0076386_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0076386_14	KOfam	K06904	NA	NA
UHGV-0076386_14	PHROG	phrog_2263	major head protein	head and packaging
UHGV-0076386_14	UniRef90	UniRef90_A0A0E2BQL6	NA	NA
UHGV-0076386_14	eggNOG-mapper	568703.LGG_01533	Phage capsid family	NA
UHGV-0076386_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0076386_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0076386_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0076386_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0076386_14	Structural annotation	PF04586, PF05065, MF_04119, TIGR01554, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0076386_15	UniRef90	UniRef90_A0A7S7FP74	NA	NA
UHGV-0076386_15	eggNOG-mapper	1423732.BALS01000063_gene2223	NA	NA
UHGV-0076386_15	Structural annotation	TIGR01560	NA	NA
UHGV-0076386_16	UniRef90	UniRef90_UPI001CC10E7C	phage head closure protein	NA
UHGV-0076386_16	eggNOG-mapper	1423732.BALS01000063_gene2224	Phage head-tail joining protein	NA
UHGV-0076386_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0076386_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0076386_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0076386_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0076386_17	UniRef90	UniRef90_UPI0004D35A8C	HK97 gp10 family phage protein	NA
UHGV-0076386_17	eggNOG-mapper	1122147.AUEH01000011_gene2118	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0076386_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0076386_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0076386_17	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0076386_18	PHROG	phrog_1217	tail protein	tail
UHGV-0076386_18	UniRef90	UniRef90_UPI000F0BB67D	NA	NA
UHGV-0076386_18	eggNOG-mapper	568703.LGG_01529	NA	NA
UHGV-0076386_18	Pfam	PF05657	NA	DUF806
UHGV-0076386_18	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0076386_19	PHROG	phrog_88	major tail protein	tail
UHGV-0076386_19	UniRef90	UniRef90_UPI0004D46653	phage tail protein	NA
UHGV-0076386_19	eggNOG-mapper	568703.LGG_01528	Phage tail tube protein	NA
UHGV-0076386_19	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0076386_19	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0076386_20	PHROG	phrog_1346	tail protein	tail
UHGV-0076386_20	UniRef90	UniRef90_A0A0R1QY87	Tail component	NA
UHGV-0076386_20	eggNOG-mapper	568703.LGG_01527	Phage tail assembly chaperone proteins, TAC	NA
UHGV-0076386_20	Pfam	PF06896	Phage tail assembly chaperone proteins, TAC	Phage_TAC_3
UHGV-0076386_20	Structural annotation	PF06896	NA	NA
UHGV-0076386_21	PHROG	phrog_2629	NA	unknown function
UHGV-0076386_21	UniRef90	UniRef90_S2QS31	NA	NA
UHGV-0076386_21	eggNOG-mapper	1423732.BALS01000063_gene2229	NA	NA
UHGV-0076386_22	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0076386_22	UniRef90	UniRef90_UPI0011595533	tape measure protein	NA
UHGV-0076386_22	eggNOG-mapper	1423732.BALS01000126_gene2495	domain protein	NA
UHGV-0076386_22	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0076386_22	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0076386_22	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0076386_22	COG	COG3953	SLT domain protein	NA
UHGV-0076386_22	Structural annotation	PF10145, COG3953	NA	NA
UHGV-0076386_23	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0076386_23	UniRef90	UniRef90_A0A2Z6BEK4	Phage tail fiber protein	NA
UHGV-0076386_23	eggNOG-mapper	146269.Q7Y4B1_9CAUD	Phage tail protein	NA
UHGV-0076386_23	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0076386_23	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0076386_23	Structural annotation	PF05709, PF16223, TIGR01633, COG4722, COG3506	NA	NA
UHGV-0076386_24	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0076386_24	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0076386_24	UniRef90	UniRef90_UPI0004D790BD	phage tail protein	NA
UHGV-0076386_24	eggNOG-mapper	146269.A8YQK1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0076386_24	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0076386_24	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0076386_24	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0076386_24	Structural annotation	PF14594, TIGR01665, COG3500	NA	NA
UHGV-0076386_25	PHROG	phrog_4573	NA	unknown function
UHGV-0076386_25	eggNOG-mapper	146269.A8YQK2_9CAUD	NA	NA
UHGV-0076386_25	Structural annotation	PF11192	NA	NA
UHGV-0076386_26	UniRef90	UniRef90_A0A873ZH07	XkdX family protein	NA
UHGV-0076386_26	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0076386_27	PHROG	phrog_689	holin	lysis
UHGV-0076386_27	UniRef90	UniRef90_A0A5R8LKE7	DNA primase	NA
UHGV-0076386_27	eggNOG-mapper	568703.LGG_01521	NA	NA
UHGV-0076386_28	PHROG	phrog_2609	holin	lysis
UHGV-0076386_28	UniRef90	UniRef90_A0A0E2BQK2	Phage holin	NA
UHGV-0076386_28	eggNOG-mapper	568703.LGG_01520	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0076386_28	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0076386_28	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0076386_29	KOfam	K07273	acm; lysozyme	NA
UHGV-0076386_29	PHROG	phrog_291	endolysin	lysis
UHGV-0076386_29	UniRef90	UniRef90_A0A0E2C1G8	Putative lysin protein	NA
UHGV-0076386_29	eggNOG-mapper	568703.LGG_01519	Glycosyl hydrolases family 25	NA
UHGV-0076386_29	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0076386_29	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0076386_29	Pfam	PF01476	LysM domain	LysM
UHGV-0076386_29	COG	COG1388	LysM repeat	NA
UHGV-0076386_29	Structural annotation	PF01476, PF18697, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0076386_30	PHROG	phrog_12658	NA	unknown function
UHGV-0076386_31	PHROG	phrog_11626	NA	unknown function
UHGV-0076386_31	UniRef90	UniRef90_A0A5P8M5X9	Transporter	NA
UHGV-0076386_31	eggNOG-mapper	1423732.BALS01000043_gene2717	NA	NA
UHGV-0076386_32	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0076386_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076386_32	UniRef90	UniRef90_Q038U1	Transcriptional regulator, xre family	NA
UHGV-0076386_32	eggNOG-mapper	568703.LGG_01095	Helix-turn-helix domain	NA
UHGV-0076386_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076386_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076386_32	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0076386_33	KOfam	K14059	int; integrase	NA
UHGV-0076386_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0076386_33	UniRef90	UniRef90_C2JXD4	Site-specific recombinase, phage integrase family	NA
UHGV-0076386_33	eggNOG-mapper	568703.LGG_01515	Phage integrase family	NA
UHGV-0076386_33	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0076386_33	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0076386_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076386_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076386_33	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA