UHGV-0076409

Genome information

Genome length 25,585 bps

CDS count 35

Completeness 62.81% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076409
vOTU ID	vOTU-018725
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_120848
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.54
Jumbo phage	No

Genome content
Genome length	25,585 bps
GC content	37.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	93.20%
Average CDS length	683.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076409_1	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076409_1	UniRef90	UniRef90_K2PX13	VRR-NUC domain-containing protein	NA
UHGV-0076409_1	eggNOG-mapper	1231377.C426_0594	VRR_NUC	NA
UHGV-0076409_1	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0076409_1	Structural annotation	PF03838, MF_04160, NF002583	NA	NA
UHGV-0076409_3	PHROG	phrog_2275	NA	unknown function
UHGV-0076409_3	UniRef90	UniRef90_A0A1V0NHW0	NA	NA
UHGV-0076409_3	eggNOG-mapper	374526.A5GYP5_9CAUD	NA	NA
UHGV-0076409_4	PHROG	phrog_2198	Alt-like transcription activator	transcription regulation
UHGV-0076409_4	UniRef90	UniRef90_UPI0013FD11C9	NA	NA
UHGV-0076409_4	eggNOG-mapper	1229517.AMFD01000023_gene1326	EVIDENCE BY HOMOLOGY BIO14.03 Phage related functions and prophages	NA
UHGV-0076409_4	Pfam	PF05263	NA	DUF722
UHGV-0076409_4	Structural annotation	PF05263, MF_00674, TIGR01636, COG1595	NA	NA
UHGV-0076409_5	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0076409_5	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0076409_5	UniRef90	UniRef90_A0A098CYG4	Terminase small subunit	NA
UHGV-0076409_5	eggNOG-mapper	1158614.I592_02274	Terminase small subunit	NA
UHGV-0076409_5	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0076409_5	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0076409_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076409_6	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0076409_6	UniRef90	UniRef90_A0A098CRV0	Phage terminase large subunit	NA
UHGV-0076409_6	eggNOG-mapper	1302286.BAOT01000008_gene597	Terminase RNAseH like domain	NA
UHGV-0076409_6	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0076409_6	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0076409_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076409_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076409_6	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0076409_7	PHROG	phrog_64	portal protein	head and packaging
UHGV-0076409_7	UniRef90	UniRef90_A0A098CQH2	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0076409_7	eggNOG-mapper	1423734.JCM14202_3061	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0076409_7	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0076409_7	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0076409_8	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0076409_8	UniRef90	UniRef90_UPI0018E16AAF	minor capsid protein	NA
UHGV-0076409_8	eggNOG-mapper	1302286.BAOT01000008_gene599	Phage Mu protein F like protein	NA
UHGV-0076409_8	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0076409_8	Pfam	PF12294	NA	DUF3626
UHGV-0076409_8	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0076409_8	COG	COG2369	NA	NA
UHGV-0076409_9	PHROG	phrog_21609	NA	unknown function
UHGV-0076409_9	UniRef90	UniRef90_A0A1V0NI96	NA	NA
UHGV-0076409_11	PHROG	phrog_918	NA	unknown function
UHGV-0076409_11	UniRef90	UniRef90_UPI001436C880	NA	NA
UHGV-0076409_11	eggNOG-mapper	420890.LCGL_1130	NA	NA
UHGV-0076409_11	Pfam	PF19791	NA	DUF6275
UHGV-0076409_11	Structural annotation	PF19791	NA	NA
UHGV-0076409_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0076409_13	UniRef90	UniRef90_A0A098CVM9	Phage minor structural protein GP20	NA
UHGV-0076409_13	eggNOG-mapper	326425.lhe_1212	Phage minor structural protein GP20	NA
UHGV-0076409_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0076409_13	Structural annotation	PF06810	NA	NA
UHGV-0076409_14	PHROG	phrog_247	major head protein	head and packaging
UHGV-0076409_14	UniRef90	UniRef90_A0A6B3S4G6	Coat protein	NA
UHGV-0076409_14	eggNOG-mapper	169963.lmo2296	NA	NA
UHGV-0076409_14	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0076409_14	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0076409_15	PHROG	phrog_7440	major tail protein	tail
UHGV-0076409_15	UniRef90	UniRef90_A0A6L2ZXL2	Fibronectin type-III domain-containing protein	NA
UHGV-0076409_15	eggNOG-mapper	1140001.I571_01840	NA	NA
UHGV-0076409_17	eggNOG-mapper	139871.A9D9T5_9VIRU	Phage gp6-like head-tail connector protein	NA
UHGV-0076409_17	Structural annotation	PF05135	NA	NA
UHGV-0076409_18	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0076409_18	UniRef90	UniRef90_A0A0F4LCZ2	Phage related protein	NA
UHGV-0076409_18	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0076409_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0076409_19	UniRef90	UniRef90_A0A098CX03	NA	NA
UHGV-0076409_19	eggNOG-mapper	97137.C821_00691	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0076409_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0076409_19	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0076409_20	PHROG	phrog_525	NA	unknown function
UHGV-0076409_20	eggNOG-mapper	1302286.BAOT01000008_gene606	NA	NA
UHGV-0076409_20	Pfam	PF20765	NA	DUF6838
UHGV-0076409_20	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0076409_22	PHROG	phrog_279	tail sheath	tail
UHGV-0076409_22	UniRef90	UniRef90_A0A098CVN5	Phage tail sheath protein	NA
UHGV-0076409_22	eggNOG-mapper	907931.AEIZ01000015_gene1089	PFAM Phage tail sheath protein	NA
UHGV-0076409_22	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0076409_22	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0076409_22	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0076409_22	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0076409_23	PHROG	phrog_365	tail protein	tail
UHGV-0076409_23	UniRef90	UniRef90_A0A098CP28	Phage-like element PBSX protein XkdM	NA
UHGV-0076409_23	eggNOG-mapper	398512.JQKC01000052_gene2661	Phage tail tube protein	NA
UHGV-0076409_23	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0076409_23	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0076409_24	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0076409_24	UniRef90	UniRef90_A0A098CX07	Phage XkdN-like protein	NA
UHGV-0076409_24	eggNOG-mapper	1423734.JCM14202_3048	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0076409_24	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0076409_24	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0076409_25	PHROG	phrog_1204	tail protein	tail
UHGV-0076409_25	UniRef90	UniRef90_A0A098CQI5	TMP_3 domain-containing protein	NA
UHGV-0076409_25	eggNOG-mapper	1423734.JCM14202_3046	phage tail tape measure protein	NA
UHGV-0076409_25	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0076409_25	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0076409_25	COG	COG5412	Phage-related protein	NA
UHGV-0076409_26	PHROG	phrog_380	endolysin	lysis
UHGV-0076409_26	eggNOG-mapper	1423734.JCM14202_3044	protein containing LysM domain	NA
UHGV-0076409_26	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0076409_26	Structural annotation	PF21821, TIGR02126, COG5437	NA	NA
UHGV-0076409_27	PHROG	phrog_400	tail protein	tail
UHGV-0076409_27	UniRef90	UniRef90_UPI0010F5E3E9	late control protein D	NA
UHGV-0076409_27	eggNOG-mapper	1302286.BAOT01000008_gene612	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0076409_27	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0076409_27	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0076409_28	PHROG	phrog_579	NA	unknown function
UHGV-0076409_28	UniRef90	UniRef90_UPI001C031973	NA	NA
UHGV-0076409_28	eggNOG-mapper	1302286.BAOT01000008_gene613	NA	NA
UHGV-0076409_28	Pfam	PF10844	NA	DUF2577
UHGV-0076409_28	Structural annotation	PF10844, MF_00216, TIGR00008	NA	NA
UHGV-0076409_29	PHROG	phrog_120	baseplate protein	tail
UHGV-0076409_29	UniRef90	UniRef90_UPI001BCAC775	NA	NA
UHGV-0076409_29	eggNOG-mapper	1423758.BN55_00080	NA	NA
UHGV-0076409_29	Pfam	PF10934	NA	DUF2634
UHGV-0076409_29	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0076409_29	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0076409_30	PHROG	phrog_6	baseplate protein	tail
UHGV-0076409_30	UniRef90	UniRef90_A0A098CQJ1	Baseplate J-like protein	NA
UHGV-0076409_30	eggNOG-mapper	1206110.L0P7C2_9CAUD	Baseplate J-like protein	NA
UHGV-0076409_30	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0076409_30	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0076409_31	PHROG	phrog_521	tail protein	tail
UHGV-0076409_31	UniRef90	UniRef90_A0A6B3RVV7	NA	NA
UHGV-0076409_31	eggNOG-mapper	326425.lhe_1197	NA	NA
UHGV-0076409_31	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0076409_31	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0076409_32	PHROG	phrog_6465	tail protein	tail
UHGV-0076409_32	eggNOG-mapper	1229517.AMFD01000023_gene1302	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0076409_32	Pfam	PF18338	Lower baseplate protein N-terminal domain	BppL_N
UHGV-0076409_32	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0076409_33	PHROG	phrog_689	holin	lysis
UHGV-0076409_33	UniRef90	UniRef90_A0A098CP38	Hemolysin XhlA	NA
UHGV-0076409_33	eggNOG-mapper	1231377.C426_0889	EVIDENCE BY HOMOLOGY BIO14.03 Phage related functions and prophages	NA
UHGV-0076409_33	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0076409_34	PHROG	phrog_443	holin	lysis
UHGV-0076409_34	UniRef90	UniRef90_F9VDD6	Phage holin	NA
UHGV-0076409_34	eggNOG-mapper	420890.LCGL_0877	Putative lactococcus lactis phage r1t holin	NA
UHGV-0076409_34	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0076409_35	PHROG	phrog_7887	endolysin	lysis
UHGV-0076409_35	UniRef90	UniRef90_A0A098CSV9	CHAP domain protein	NA
UHGV-0076409_35	eggNOG-mapper	1229517.AMFD01000018_gene168	pathogenesis	NA
UHGV-0076409_35	Pfam	PF05257	CHAP domain	CHAP
UHGV-0076409_35	COG	COG3942	Surface antigen	NA