UHGV-0076418

Genome information

Genome length 27,458 bps

CDS count 41

Completeness 57.37% (medium-quality)

geNomad score 0.9524

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076418
vOTU ID	vOTU-022650
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_120847
BioSample	SAMEA2580163
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9524
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.53
Jumbo phage	No

Genome content
Genome length	27,458 bps
GC content	35.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.23%
Average CDS length	634.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076418_4	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0076418_4	PHROG	phrog_819	tail protein	tail
UHGV-0076418_4	UniRef90	UniRef90_UPI0006B50A68	collagen-like protein	NA
UHGV-0076418_4	eggNOG-mapper	1196323.ALKF01000191_gene5623	Collagen triple helix repeat (20 copies)	NA
UHGV-0076418_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0076418_4	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0076418_5	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0076418_5	UniRef90	UniRef90_UPI00188B6258	phage tail protein	NA
UHGV-0076418_5	eggNOG-mapper	1589751.A0A0C5AEQ0_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0076418_5	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0076418_6	PHROG	phrog_14404	baseplate protein	tail
UHGV-0076418_6	UniRef90	UniRef90_A0A5B9Y8K3	Phage tail protein I	NA
UHGV-0076418_6	eggNOG-mapper	1157490.EL26_01695	Tail protein	NA
UHGV-0076418_6	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0076418_6	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0076418_6	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0076418_6	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0076418_7	PHROG	phrog_6	baseplate protein	tail
UHGV-0076418_7	UniRef90	UniRef90_A0A5B9YAA6	Baseplate J/gp47 family protein	NA
UHGV-0076418_7	eggNOG-mapper	857293.CAAU_0815	Baseplate J-like protein	NA
UHGV-0076418_7	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0076418_7	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0076418_7	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0076418_8	KOfam	K06903	NA	NA
UHGV-0076418_8	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0076418_8	UniRef90	UniRef90_A0A5B9Y7T9	GPW/gp25 family protein	NA
UHGV-0076418_8	eggNOG-mapper	1232443.BAIA02000135_gene1413	GPW Gp25 family protein	NA
UHGV-0076418_8	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0076418_8	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0076418_8	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0076418_9	KOfam	K06906	NA	NA
UHGV-0076418_9	PHROG	phrog_76	tail protein	tail
UHGV-0076418_9	UniRef90	UniRef90_A0A5B9Y8H9	Phage tail protein	NA
UHGV-0076418_9	eggNOG-mapper	1501230.ET33_26375	Phage P2 GpU	NA
UHGV-0076418_9	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0076418_9	COG	COG3499	NA	NA
UHGV-0076418_9	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0076418_10	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0076418_10	UniRef90	UniRef90_K4ZI36	Phage baseplate assembly protein V	NA
UHGV-0076418_10	eggNOG-mapper	349161.Dred_1217	Baseplate assembly protein	NA
UHGV-0076418_10	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0076418_11	KOfam	K06905	NA	NA
UHGV-0076418_11	PHROG	phrog_52	tail protein	tail
UHGV-0076418_11	UniRef90	UniRef90_UPI000490D98C	phage late control protein	NA
UHGV-0076418_11	eggNOG-mapper	1449063.JMLS01000030_gene462	COG3500 Phage protein D	NA
UHGV-0076418_11	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-0076418_11	COG	COG3500	NA	NA
UHGV-0076418_11	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0076418_12	PHROG	phrog_46	tail protein	tail
UHGV-0076418_12	UniRef90	UniRef90_A0A0U9HMM4	p2-like prophage tail protein X	NA
UHGV-0076418_12	eggNOG-mapper	1157490.EL26_01725	Phage Tail Protein X	NA
UHGV-0076418_12	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0076418_12	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0076418_12	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0076418_13	PHROG	phrog_973	tail length tape measure protein	tail
UHGV-0076418_13	UniRef90	UniRef90_UPI00096FCEA0	tape measure protein	NA
UHGV-0076418_13	eggNOG-mapper	632245.CLP_2908	phage tail tape measure protein	NA
UHGV-0076418_13	Pfam	PF05017	TMP repeat	TMP
UHGV-0076418_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0076418_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0076418_15	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0076418_15	UniRef90	UniRef90_A0A5B9Y7N1	Phage tail assembly protein	NA
UHGV-0076418_15	eggNOG-mapper	349161.Dred_1214	NA	NA
UHGV-0076418_15	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0076418_15	Structural annotation	PF10109	NA	NA
UHGV-0076418_16	KOfam	K06908	NA	NA
UHGV-0076418_16	PHROG	phrog_55	head closure	connector
UHGV-0076418_16	UniRef90	UniRef90_A0A5B9Y8G1	Phage tail protein	NA
UHGV-0076418_16	eggNOG-mapper	1449063.JMLS01000030_gene458	Phage tail tube protein FII	NA
UHGV-0076418_16	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0076418_16	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0076418_16	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0076418_17	KOfam	K06907	NA	NA
UHGV-0076418_17	PHROG	phrog_23	tail sheath	tail
UHGV-0076418_17	UniRef90	UniRef90_A0A5B9Y8L6	Phage tail sheath family protein	NA
UHGV-0076418_17	eggNOG-mapper	857293.CAAU_0806	COG3497 Phage tail sheath protein FI	NA
UHGV-0076418_17	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0076418_17	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0076418_18	PHROG	phrog_4089	NA	unknown function
UHGV-0076418_18	eggNOG-mapper	572547.Amico_1115	NA	NA
UHGV-0076418_19	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0076418_19	eggNOG-mapper	349161.Dred_1210	NA	NA
UHGV-0076418_19	Structural annotation	PF09646, COG5003	NA	NA
UHGV-0076418_20	PHROG	phrog_2551	minor tail protein	tail
UHGV-0076418_20	eggNOG-mapper	665959.HMPREF1013_00840	NA	NA
UHGV-0076418_20	Structural annotation	PF13856	NA	NA
UHGV-0076418_21	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0076418_22	PHROG	phrog_29	major head protein	head and packaging
UHGV-0076418_22	UniRef90	UniRef90_A0A5B9YAR9	Major capsid protein	NA
UHGV-0076418_22	eggNOG-mapper	1235793.C809_02663	Phage major capsid protein E	NA
UHGV-0076418_22	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0076418_22	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0076418_23	PHROG	phrog_49	head decoration	head and packaging
UHGV-0076418_23	UniRef90	UniRef90_A0A3A9D1N6	Head decoration protein	NA
UHGV-0076418_23	eggNOG-mapper	936573.HMPREF1147_1719	Bacteriophage lambda head decoration protein D	NA
UHGV-0076418_23	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0076418_23	Structural annotation	PF02924, COG5471	NA	NA
UHGV-0076418_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0076418_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0076418_24	UniRef90	UniRef90_A0A7T5ENA5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0076418_24	eggNOG-mapper	857293.CAAU_0798	Belongs to the peptidase S14 family	NA
UHGV-0076418_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0076418_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0076418_24	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0076418_25	PHROG	phrog_21	portal protein	head and packaging
UHGV-0076418_25	UniRef90	UniRef90_A0A5B9Y8G9	Phage portal protein	NA
UHGV-0076418_25	eggNOG-mapper	857293.CAAU_0797	Phage portal protein, lambda family	NA
UHGV-0076418_25	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0076418_25	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0076418_25	COG	COG5511	Phage capsid protein	NA
UHGV-0076418_25	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0076418_26	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0076418_26	eggNOG-mapper	1235793.C809_02659	NA	NA
UHGV-0076418_26	Pfam	PF19645	NA	DUF6148
UHGV-0076418_26	Structural annotation	PF19645	NA	NA
UHGV-0076418_27	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0076418_27	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0076418_27	UniRef90	UniRef90_A0A367FXR4	Terminase	NA
UHGV-0076418_27	eggNOG-mapper	1235793.C809_02658	Phage terminase large subunit (GpA)	NA
UHGV-0076418_27	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0076418_27	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0076418_27	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0076418_27	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0076418_27	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0076418_28	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0076418_28	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0076418_28	UniRef90	UniRef90_A0A1M7YBS6	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0076418_28	eggNOG-mapper	1235793.C809_02657	NA	NA
UHGV-0076418_28	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0076418_28	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0076418_29	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0076418_29	UniRef90	UniRef90_UPI001BE5FD78	phage tail protein	NA
UHGV-0076418_29	eggNOG-mapper	1211817.CCAT010000013_gene3180	Prophage minor tail protein Z (GPZ)	NA
UHGV-0076418_29	Structural annotation	PF06763	NA	NA
UHGV-0076418_30	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0076418_30	PHROG	phrog_216	integrase	integration and excision
UHGV-0076418_30	UniRef90	UniRef90_A0A5B9Y8J2	Tyrosine-type recombinase/integrase	NA
UHGV-0076418_30	eggNOG-mapper	1450694.BTS2_3336	Integrase	NA
UHGV-0076418_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076418_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076418_30	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0076418_31	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0076418_31	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0076418_31	UniRef90	UniRef90_UPI0006B62702	DNA adenine methylase	NA
UHGV-0076418_31	eggNOG-mapper	396359.Q0SPG6_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0076418_31	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0076418_31	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0076418_31	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0076418_31	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0076418_32	KOfam	K03790	rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]	NA
UHGV-0076418_32	PHROG	phrog_1249	acetyltransferase	other
UHGV-0076418_32	UniRef90	UniRef90_A0A401ULH2	N-acetyltransferase	NA
UHGV-0076418_32	eggNOG-mapper	1499683.CCFF01000014_gene3697	Acetyltransferase (GNAT) domain	NA
UHGV-0076418_32	Pfam	PF13302	Acetyltransferase (GNAT) domain	Acetyltransf_3
UHGV-0076418_32	COG	COG1670	Protein N-acetyltransferase, RimJ/RimL family	NA
UHGV-0076418_32	Structural annotation	PF13302, MF_02210, NF000485, COG1670	NA	NA
UHGV-0076418_33	UniRef90	UniRef90_A0A3B8S971	VanZ domain-containing protein	NA
UHGV-0076418_33	eggNOG-mapper	373903.Hore_15700	NA	NA
UHGV-0076418_34	PHROG	phrog_4809	NA	unknown function
UHGV-0076418_34	UniRef90	UniRef90_UPI00047AC3A8	ClbS/DfsB family four-helix bundle protein	NA
UHGV-0076418_34	eggNOG-mapper	1408422.JHYF01000008_gene3689	NA	NA
UHGV-0076418_34	Pfam	PF08020	NA	DUF1706
UHGV-0076418_34	COG	COG4283	NA	NA
UHGV-0076418_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076418_35	eggNOG-mapper	1408823.AXUS01000025_gene2668	sigma factor activity	NA
UHGV-0076418_35	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0076418_35	Structural annotation	PF08281, MF_00674, TIGR01636, COG1595	NA	NA
UHGV-0076418_37	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0076418_37	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0076418_37	UniRef90	UniRef90_UPI0006B49AE2	ParM/StbA family protein	NA
UHGV-0076418_37	eggNOG-mapper	1123405.AUMM01000033_gene1829	StbA protein	NA
UHGV-0076418_37	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0076418_37	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-0076418_37	COG	COG0443	Molecular chaperone DnaK (HSP70)	NA
UHGV-0076418_37	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0076418_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076418_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076418_38	UniRef90	UniRef90_UPI0006B53099	single-stranded DNA-binding protein	NA
UHGV-0076418_38	eggNOG-mapper	642492.Clole_1072	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0076418_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076418_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076418_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076418_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076418_38	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0076418_41	eggNOG-mapper	1487921.DP68_08800	NA	NA