UHGV-0076507

Genome information

Genome length 35,326 bps

CDS count 53

Completeness 92.37% (high-quality)

geNomad score 0.9708

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076507
vOTU ID	vOTU-065654
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_131880
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.37% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9708
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.49
Jumbo phage	No

Genome content
Genome length	35,326 bps
GC content	48.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.57%
Average CDS length	627.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076507_1	KOfam	K14059	int; integrase	NA
UHGV-0076507_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0076507_1	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-0076507_1	eggNOG-mapper	1216362.B437_07177	Belongs to the 'phage' integrase family	NA
UHGV-0076507_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076507_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076507_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0076507_2	PHROG	phrog_5783	NA	unknown function
UHGV-0076507_2	UniRef90	UniRef90_R5XZX4	NYN domain-containing protein	NA
UHGV-0076507_2	eggNOG-mapper	1219581.HMPREF1628_01875	NYN domain	NA
UHGV-0076507_2	Pfam	PF01936	NYN domain	NYN
UHGV-0076507_2	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0076507_2	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0076507_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0076507_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0076507_3	UniRef90	UniRef90_R6MAH2	LexA repressor	NA
UHGV-0076507_3	eggNOG-mapper	641112.ACOK01000103_gene520	DNA-binding helix-turn-helix protein	NA
UHGV-0076507_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076507_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0076507_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0076507_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0076507_4	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0076507_4	UniRef90	UniRef90_A0A374UNQ5	XRE family transcriptional regulator	NA
UHGV-0076507_4	eggNOG-mapper	1211817.CCAT010000053_gene2103	Helix-turn-helix	NA
UHGV-0076507_4	Pfam	PF05339	NA	DUF739
UHGV-0076507_4	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0076507_8	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0076507_8	UniRef90	UniRef90_A0A3M1PVL4	XRE family transcriptional regulator (Fragment)	NA
UHGV-0076507_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076507_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076507_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0076507_10	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0076507_10	PHROG	phrog_18750	NA	unknown function
UHGV-0076507_10	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0076507_10	eggNOG-mapper	445972.ANACOL_03333	Cell wall hydrolase	NA
UHGV-0076507_10	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0076507_10	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0076507_10	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0076507_11	PHROG	phrog_924	NA	unknown function
UHGV-0076507_11	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0076507_11	Pfam	PF04448	NA	DUF551
UHGV-0076507_15	PHROG	phrog_824	NA	unknown function
UHGV-0076507_15	UniRef90	UniRef90_A0A3D5TLJ2	VRR-NUC domain-containing protein	NA
UHGV-0076507_15	eggNOG-mapper	1235792.C808_00075	VRR_NUC	NA
UHGV-0076507_15	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0076507_15	Structural annotation	PF08774, COG1996	NA	NA
UHGV-0076507_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0076507_16	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0076507_16	UniRef90	UniRef90_A0A3D1I1E6	ParB domain-containing protein	NA
UHGV-0076507_16	eggNOG-mapper	445972.ANACOL_00162	ParB-like nuclease domain	NA
UHGV-0076507_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0076507_16	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0076507_16	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0076507_16	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0076507_20	PHROG	phrog_3136	NA	unknown function
UHGV-0076507_20	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0076507_20	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0076507_20	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0076507_20	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0076507_22	PHROG	phrog_24518	NA	unknown function
UHGV-0076507_22	eggNOG-mapper	693746.OBV_25370	NA	NA
UHGV-0076507_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0076507_23	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0076507_23	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0076507_25	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0076507_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0076507_25	UniRef90	UniRef90_A0A374LFF8	Class V aminotransferase	NA
UHGV-0076507_25	eggNOG-mapper	537013.CLOSTMETH_01340	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0076507_25	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0076507_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0076507_25	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0076507_26	PHROG	phrog_8684	NA	unknown function
UHGV-0076507_26	UniRef90	UniRef90_A0A661QKM8	YopX domain-containing protein	NA
UHGV-0076507_26	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0076507_26	Pfam	PF09643	YopX protein	YopX
UHGV-0076507_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0076507_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0076507_27	PHROG	phrog_11237	NA	unknown function
UHGV-0076507_27	eggNOG-mapper	537013.CLOSTMETH_01096	NA	NA
UHGV-0076507_27	Structural annotation	TIGR01636	NA	NA
UHGV-0076507_28	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0076507_28	PHROG	phrog_12862	NA	unknown function
UHGV-0076507_28	UniRef90	UniRef90_UPI000A26DFF4	site-specific DNA-methyltransferase	NA
UHGV-0076507_28	eggNOG-mapper	1120998.AUFC01000030_gene2227	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0076507_28	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0076507_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0076507_28	COG	COG0863	DNA modification methylase	NA
UHGV-0076507_28	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0076507_30	PHROG	phrog_12389	NA	unknown function
UHGV-0076507_30	eggNOG-mapper	1196322.A370_03932	NA	NA
UHGV-0076507_31	PHROG	phrog_20533	NA	unknown function
UHGV-0076507_31	UniRef90	UniRef90_A0A7C6U4T3	PLD phosphodiesterase domain-containing protein	NA
UHGV-0076507_31	eggNOG-mapper	1123058.KB894251_gene2369	NA	NA
UHGV-0076507_31	Structural annotation	PF17941, MF_01918, NF010490, COG3886	NA	NA
UHGV-0076507_32	PHROG	phrog_17390	NA	unknown function
UHGV-0076507_32	UniRef90	UniRef90_UPI001E61FF52	terminase small subunit	NA
UHGV-0076507_32	eggNOG-mapper	1158614.I592_02434	Terminase small subunit	NA
UHGV-0076507_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0076507_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0076507_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076507_33	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0076507_33	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-0076507_33	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0076507_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0076507_33	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0076507_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076507_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076507_33	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0076507_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0076507_34	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-0076507_34	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0076507_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0076507_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0076507_35	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0076507_35	UniRef90	UniRef90_A0A3D2QEP6	Phage_Mu_F domain-containing protein	NA
UHGV-0076507_35	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0076507_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0076507_35	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-0076507_35	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0076507_35	COG	COG2369	NA	NA
UHGV-0076507_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0076507_37	UniRef90	UniRef90_UPI001651708C	phage scaffolding protein	NA
UHGV-0076507_37	eggNOG-mapper	1196028.ALEF01000043_gene465	Phage minor structural protein GP20	NA
UHGV-0076507_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0076507_38	PHROG	phrog_283	major head protein	head and packaging
UHGV-0076507_38	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-0076507_38	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-0076507_38	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0076507_38	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0076507_39	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0076507_39	UniRef90	UniRef90_R6I6I7	NA	NA
UHGV-0076507_39	eggNOG-mapper	268407.PWYN_03015	NA	NA
UHGV-0076507_40	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0076507_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0076507_41	UniRef90	UniRef90_R6IVT6	Bacteriophage protein PF04883 family	NA
UHGV-0076507_41	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0076507_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0076507_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0076507_41	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0076507_42	Structural annotation	PF05657	NA	NA
UHGV-0076507_43	PHROG	phrog_158	major tail protein	tail
UHGV-0076507_43	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-0076507_43	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-0076507_43	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0076507_43	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0076507_44	UniRef90	UniRef90_UPI0012BCDD8A	NA	NA
UHGV-0076507_44	eggNOG-mapper	1211844.CBLM010000016_gene1484	NA	NA
UHGV-0076507_44	Structural annotation	PF19591	NA	NA
UHGV-0076507_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0076507_45	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0076507_45	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0076507_46	PHROG	phrog_26910	NA	unknown function
UHGV-0076507_46	eggNOG-mapper	1117958.PE143B_0109845	NA	NA
UHGV-0076507_47	PHROG	phrog_1194	NA	unknown function
UHGV-0076507_47	UniRef90	UniRef90_A0A0R1Q5P9	NA	NA
UHGV-0076507_47	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-0076507_47	Pfam	PF20458	NA	DUF6711
UHGV-0076507_47	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0076507_48	PHROG	phrog_6616	tail protein	tail
UHGV-0076507_48	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0076507_48	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-0076507_48	COG	COG4926	Phage-related protein	NA
UHGV-0076507_48	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0076507_50	Structural annotation	PF10651, NF009453	NA	NA
UHGV-0076507_51	Structural annotation	PF02973	NA	NA