UHGV-0076511

Genome information

Genome length 35,516 bps

CDS count 56

Completeness 83.66% (medium-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076511
vOTU ID	vOTU-015321
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_131883
BioSample	SAMEA2737876
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.67
Jumbo phage	No

Genome content
Genome length	35,516 bps
GC content	39.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.36%
Average CDS length	574.71 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076511_2	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0076511_2	Structural annotation	PF07691	NA	NA
UHGV-0076511_3	PHROG	phrog_18725	NA	unknown function
UHGV-0076511_3	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0076511_3	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0076511_4	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0076511_4	PHROG	phrog_11157	NA	unknown function
UHGV-0076511_4	UniRef90	UniRef90_A0A416HMQ3	Big_13 domain-containing protein	NA
UHGV-0076511_4	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-0076511_4	Pfam	PF17957	Bacterial Ig domain	Big_7
UHGV-0076511_4	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0076511_4	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-0076511_4	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0076511_6	PHROG	phrog_13879	NA	unknown function
UHGV-0076511_6	eggNOG-mapper	1232449.BAHV02000010_gene2725	NA	NA
UHGV-0076511_6	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0076511_7	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0076511_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0076511_8	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-0076511_8	eggNOG-mapper	33035.JPJF01000043_gene1003	phage tail tape measure protein	NA
UHGV-0076511_8	COG	COG1511	NA	NA
UHGV-0076511_9	PHROG	phrog_706	NA	unknown function
UHGV-0076511_9	UniRef90	UniRef90_UPI0011DC8B0C	Gp15 family bacteriophage protein	NA
UHGV-0076511_9	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0076511_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0076511_9	Structural annotation	PF06854	NA	NA
UHGV-0076511_10	PHROG	phrog_11299	NA	unknown function
UHGV-0076511_10	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0076511_10	Structural annotation	PF10666	NA	NA
UHGV-0076511_11	PHROG	phrog_3099	NA	unknown function
UHGV-0076511_11	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0076511_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0076511_12	PHROG	phrog_3266	tail completion	connector
UHGV-0076511_12	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0076511_12	Structural annotation	PF12691	NA	NA
UHGV-0076511_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0076511_13	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0076511_13	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0076511_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0076511_13	Structural annotation	PF11114	NA	NA
UHGV-0076511_14	PHROG	phrog_3366	NA	unknown function
UHGV-0076511_14	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0076511_14	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0076511_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0076511_15	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0076511_16	PHROG	phrog_283	major head protein	head and packaging
UHGV-0076511_16	UniRef90	UniRef90_A0A316RCU2	P22 coat protein	NA
UHGV-0076511_16	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-0076511_16	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0076511_16	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0076511_17	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0076511_17	eggNOG-mapper	1125725.HMPREF1325_1331	Phage minor structural protein GP20	NA
UHGV-0076511_18	UniRef90	UniRef90_A0A6L5YME3	Conjugal transfer protein	NA
UHGV-0076511_18	eggNOG-mapper	1235835.C814_02704	Cysteine-rich KTR	NA
UHGV-0076511_18	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0076511_18	Structural annotation	PF14205, COG4416	NA	NA
UHGV-0076511_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0076511_19	UniRef90	UniRef90_A0A412EKN3	Phage capsid protein	NA
UHGV-0076511_19	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0076511_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0076511_19	COG	COG2369	NA	NA
UHGV-0076511_19	Structural annotation	PF06152	NA	NA
UHGV-0076511_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0076511_20	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0076511_20	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0076511_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0076511_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076511_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0076511_21	UniRef90	UniRef90_UPI000E54849E	PBSX family phage terminase large subunit	NA
UHGV-0076511_21	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0076511_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0076511_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0076511_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0076511_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076511_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076511_21	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0076511_22	PHROG	phrog_33130	NA	unknown function
UHGV-0076511_22	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0076511_22	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0076511_23	PHROG	phrog_9479	NA	unknown function
UHGV-0076511_23	UniRef90	UniRef90_A0A2N0UXN8	Ntox24 domain-containing protein	NA
UHGV-0076511_23	Structural annotation	PF15529	NA	NA
UHGV-0076511_25	PHROG	phrog_8680	NA	unknown function
UHGV-0076511_25	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-0076511_25	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0076511_25	Pfam	PF14386	NA	DUF4417
UHGV-0076511_25	Structural annotation	PF14386	NA	NA
UHGV-0076511_30	Structural annotation	PF18358	NA	NA
UHGV-0076511_31	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0076511_31	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0076511_31	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0076511_31	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0076511_31	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0076511_32	PHROG	phrog_874	NA	unknown function
UHGV-0076511_32	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0076511_32	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0076511_34	UniRef90	UniRef90_UPI001D046CFA	NA	NA
UHGV-0076511_34	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0076511_34	Pfam	PF09643	YopX protein	YopX
UHGV-0076511_35	PHROG	phrog_10455	NA	unknown function
UHGV-0076511_35	UniRef90	UniRef90_R7N9Z9	Conserved domain protein	NA
UHGV-0076511_38	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0076511_38	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0076511_38	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0076511_38	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0076511_38	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0076511_38	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0076511_38	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0076511_39	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0076511_39	UniRef90	UniRef90_A0A4P8I8N3	DnaD domain protein	NA
UHGV-0076511_39	eggNOG-mapper	1071400.LBUCD034_0926	DnaD domain protein	NA
UHGV-0076511_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0076511_39	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0076511_40	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0076511_40	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076511_40	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0076511_40	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0076511_40	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0076511_40	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0076511_40	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0076511_42	PHROG	phrog_398	NA	unknown function
UHGV-0076511_42	UniRef90	UniRef90_A0A4P8IGL9	NA	NA
UHGV-0076511_42	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0076511_42	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0076511_42	Structural annotation	PF16784	NA	NA
UHGV-0076511_43	PHROG	phrog_14970	NA	unknown function
UHGV-0076511_43	eggNOG-mapper	1235798.C817_00385	double-strand break repair protein	NA
UHGV-0076511_43	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0076511_43	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0076511_43	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0076511_45	Structural annotation	PF15513, NF007469	NA	NA
UHGV-0076511_48	Structural annotation	PF11127	NA	NA
UHGV-0076511_49	UniRef90	UniRef90_UPI001C033D96	helix-turn-helix domain-containing protein	NA
UHGV-0076511_49	Structural annotation	PF13443, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0076511_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076511_51	UniRef90	UniRef90_UPI00156E2D91	helix-turn-helix domain-containing protein	NA
UHGV-0076511_51	eggNOG-mapper	655812.HMPREF0061_0222	Helix-turn-helix XRE-family like proteins	NA
UHGV-0076511_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076511_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076511_51	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0076511_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076511_52	UniRef90	UniRef90_A0A3A6GF44	XRE family transcriptional regulator	NA
UHGV-0076511_52	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-0076511_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076511_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076511_52	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0076511_53	PHROG	phrog_87	metallo-protease	other
UHGV-0076511_53	UniRef90	UniRef90_A0A3R5ZQW8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0076511_53	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0076511_53	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0076511_53	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0076511_53	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0076511_54	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0076511_54	PHROG	phrog_16726	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076511_54	UniRef90	UniRef90_A0A3R6CIB5	HNH endonuclease	NA
UHGV-0076511_54	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0076511_54	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0076511_54	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0076511_54	Structural annotation	PF01844, NF040563, COG1403	NA	NA
UHGV-0076511_55	KOfam	K14059	int; integrase	NA
UHGV-0076511_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0076511_55	UniRef90	UniRef90_A0A6L6L8L1	Tyrosine-type recombinase/integrase	NA
UHGV-0076511_55	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0076511_55	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0076511_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076511_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076511_55	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0076511_56	eggNOG-mapper	743719.PaelaDRAFT_5811	NA	NA