UHGV-0076529

Genome information

Genome length 31,838 bps

CDS count 46

Completeness 76.83% (medium-quality)

geNomad score 0.9535

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076529
vOTU ID	vOTU-022778
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_129403
BioSample	SAMEA2737762
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9535
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.39
Jumbo phage	No

Genome content
Genome length	31,838 bps
GC content	46.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	85.97%
Average CDS length	603.07 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076529_1	PHROG	phrog_1314	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076529_1	UniRef90	UniRef90_UPI0016448E9F	VWA-like domain-containing protein	NA
UHGV-0076529_1	eggNOG-mapper	1273103.NM10_00105	NA	NA
UHGV-0076529_1	Pfam	PF13203	Putative metallopeptidase domain	DUF2201_N
UHGV-0076529_1	Pfam	PF09967	NA	DUF2201
UHGV-0076529_1	COG	COG3864	Predicted metal-dependent peptidase	NA
UHGV-0076529_2	KOfam	K04748	norQ; nitric oxide reductase NorQ protein	NA
UHGV-0076529_2	PHROG	phrog_1297	ATPase	other
UHGV-0076529_2	UniRef90	UniRef90_A0A848BRN5	AAA domain-containing protein	NA
UHGV-0076529_2	eggNOG-mapper	1273103.NM10_00110	associated with various cellular activities	NA
UHGV-0076529_2	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0076529_2	COG	COG0714	MoxR-like ATPase	NA
UHGV-0076529_2	Structural annotation	PF07726, MF_04162, TIGR01650, COG0714	NA	NA
UHGV-0076529_3	PHROG	phrog_17056	NA	unknown function
UHGV-0076529_3	UniRef90	UniRef90_A0A848BWQ8	NA	NA
UHGV-0076529_3	eggNOG-mapper	1414720.CBYM010000022_gene2234	NA	NA
UHGV-0076529_3	Pfam	PF13475	NA	DUF4116
UHGV-0076529_5	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0076529_5	UniRef90	UniRef90_UPI001F405464	minor capsid protein	NA
UHGV-0076529_5	eggNOG-mapper	1273103.NM10_01064	Phage Mu protein F like protein	NA
UHGV-0076529_5	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0076529_5	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0076529_5	COG	COG2369	NA	NA
UHGV-0076529_7	eggNOG-mapper	1273103.NM10_01059	NA	NA
UHGV-0076529_8	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0076529_8	UniRef90	UniRef90_A0A413QU59	HTH_59 domain-containing protein	NA
UHGV-0076529_8	eggNOG-mapper	1111454.HMPREF1250_0298	NA	NA
UHGV-0076529_8	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0076529_8	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0076529_9	KOfam	K14059	int; integrase	NA
UHGV-0076529_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0076529_9	UniRef90	UniRef90_A0A413QU84	Site-specific integrase	NA
UHGV-0076529_9	eggNOG-mapper	1121423.JONT01000002_gene2371	Belongs to the 'phage' integrase family	NA
UHGV-0076529_9	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0076529_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076529_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076529_9	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0076529_11	UniRef90	UniRef90_A0A416ESD6	NA	NA
UHGV-0076529_11	eggNOG-mapper	1445613.JALM01000051_gene4092	NA	NA
UHGV-0076529_11	Pfam	PF12686	NA	DUF3800
UHGV-0076529_11	Structural annotation	TIGR00729, COG1039	NA	NA
UHGV-0076529_12	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0076529_12	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0076529_12	UniRef90	UniRef90_A0A413QU80	XRE family transcriptional regulator	NA
UHGV-0076529_12	eggNOG-mapper	1111454.HMPREF1250_0095	Peptidase S24-like	NA
UHGV-0076529_12	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0076529_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076529_12	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0076529_12	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0076529_12	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0076529_13	UniRef90	UniRef90_UPI000687A369	helix-turn-helix domain-containing protein	NA
UHGV-0076529_13	eggNOG-mapper	195103.CPF_1603	Helix-turn-helix XRE-family like proteins	NA
UHGV-0076529_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076529_13	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0076529_14	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0076529_14	UniRef90	UniRef90_A0A413QU67	XRE family transcriptional regulator	NA
UHGV-0076529_14	eggNOG-mapper	748727.CLJU_c31700	sequence-specific DNA binding	NA
UHGV-0076529_14	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0076529_14	Structural annotation	PF06892, NF040522, COG1476	NA	NA
UHGV-0076529_15	UniRef90	UniRef90_A0A413QUL4	DNA-binding protein	NA
UHGV-0076529_15	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0076529_15	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0076529_17	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076529_17	UniRef90	UniRef90_A0A413QU94	Endonuclease	NA
UHGV-0076529_17	eggNOG-mapper	1111454.HMPREF1250_0282	YqaJ viral recombinase family protein	NA
UHGV-0076529_17	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0076529_17	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0076529_17	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0076529_17	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0076529_18	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0076529_18	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0076529_18	UniRef90	UniRef90_A0A413QU82	Recombinase RecT	NA
UHGV-0076529_18	eggNOG-mapper	1111454.HMPREF1250_0281	Recombinase, phage RecT family	NA
UHGV-0076529_18	Pfam	PF03837	RecT family	RecT
UHGV-0076529_18	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0076529_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0076529_18	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0076529_19	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0076529_19	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0076529_19	UniRef90	UniRef90_A0A413QUE4	Hydrolase	NA
UHGV-0076529_19	eggNOG-mapper	1235797.C816_03132	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0076529_19	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0076529_19	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0076529_20	PHROG	phrog_9403	NA	unknown function
UHGV-0076529_21	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0076529_21	UniRef90	UniRef90_A0A346B147	NA	NA
UHGV-0076529_21	eggNOG-mapper	1280689.AUJC01000003_gene938	NA	NA
UHGV-0076529_21	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0076529_21	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0076529_21	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0076529_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0076529_21	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0076529_22	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0076529_22	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0076529_22	UniRef90	UniRef90_A0A848EXA8	ATP-binding protein	NA
UHGV-0076529_22	eggNOG-mapper	871968.DESME_09735	DNA-dependent DNA replication	NA
UHGV-0076529_22	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0076529_22	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0076529_22	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0076529_24	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0076529_24	UniRef90	UniRef90_A0A848EWR1	NA	NA
UHGV-0076529_24	eggNOG-mapper	936573.HMPREF1147_1706	NA	NA
UHGV-0076529_24	Pfam	PF14359	NA	DUF4406
UHGV-0076529_24	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0076529_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076529_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076529_25	UniRef90	UniRef90_A0A848EVG3	Single-stranded DNA-binding protein	NA
UHGV-0076529_25	eggNOG-mapper	397288.C806_03901	Single-strand binding protein family	NA
UHGV-0076529_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076529_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076529_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076529_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076529_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0076529_26	PHROG	phrog_37395	NA	unknown function
UHGV-0076529_29	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0076529_29	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076529_29	UniRef90	UniRef90_A0A848BY82	HU family DNA-binding protein	NA
UHGV-0076529_29	eggNOG-mapper	1000569.HMPREF1040_0696	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-0076529_29	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0076529_29	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0076529_29	Structural annotation	PF00216, MF_00381, NF007945, COG0776	NA	NA
UHGV-0076529_30	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076529_30	UniRef90	UniRef90_A0A413QUG4	NA	NA
UHGV-0076529_30	eggNOG-mapper	1567014.A0A0A7RTV9_9VIRU	NA	NA
UHGV-0076529_30	Pfam	PF06356	NA	DUF1064
UHGV-0076529_30	Structural annotation	PF06356, MF_04160, NF033179, COG2887	NA	NA
UHGV-0076529_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076529_31	UniRef90	UniRef90_A0A346B157	RNA polymerase subunit sigma-70	NA
UHGV-0076529_31	eggNOG-mapper	1273103.NM10_01099	NA	NA
UHGV-0076529_31	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-0076529_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0076529_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0076529_33	UniRef90	UniRef90_A0A413QU90	Terminase small subunit	NA
UHGV-0076529_33	eggNOG-mapper	1000569.HMPREF1040_0201	terminase, small subunit	NA
UHGV-0076529_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0076529_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0076529_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0076529_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076529_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0076529_34	UniRef90	UniRef90_S7J6J3	Phage terminase large subunit	NA
UHGV-0076529_34	eggNOG-mapper	1273103.NM10_06806	Phage terminase large subunit	NA
UHGV-0076529_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0076529_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0076529_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076529_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076529_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0076529_35	PHROG	phrog_145	portal protein	head and packaging
UHGV-0076529_35	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-0076529_35	eggNOG-mapper	1273103.NM10_06801	NA	NA
UHGV-0076529_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0076529_36	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0076529_36	UniRef90	UniRef90_UPI00041DDA5E	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0076529_36	eggNOG-mapper	1111454.HMPREF1250_1044	NA	NA
UHGV-0076529_37	Structural annotation	PF11344	NA	NA
UHGV-0076529_38	PHROG	phrog_3675	NA	unknown function
UHGV-0076529_38	UniRef90	UniRef90_A0A316LJU0	Dihydrolipoyl dehydrogenase	NA
UHGV-0076529_38	eggNOG-mapper	591001.Acfer_0940	YjcQ protein	NA
UHGV-0076529_38	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0076529_38	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0076529_39	PHROG	phrog_206	head scaffolding protein	head and packaging
UHGV-0076529_39	eggNOG-mapper	1273103.NM10_06791	NA	NA
UHGV-0076529_40	PHROG	phrog_267	major head protein	head and packaging
UHGV-0076529_40	UniRef90	UniRef90_U7UG71	Coat protein, P22 domain protein	NA
UHGV-0076529_40	eggNOG-mapper	1273103.NM10_06786	P22 coat protein-protein 5 domain protein	NA
UHGV-0076529_41	KOfam	K14059	int; integrase	NA
UHGV-0076529_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0076529_41	UniRef90	UniRef90_UPI001D034FB9	site-specific integrase	NA
UHGV-0076529_41	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-0076529_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076529_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076529_41	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0076529_42	PHROG	phrog_4105	NA	unknown function
UHGV-0076529_42	eggNOG-mapper	706434.HMPREF9429_00642	NA	NA
UHGV-0076529_43	PHROG	phrog_28789	NA	unknown function
UHGV-0076529_43	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-0076529_43	eggNOG-mapper	1273103.NM10_00934	NA	NA
UHGV-0076529_44	KOfam	K07273	acm; lysozyme	NA
UHGV-0076529_44	PHROG	phrog_291	endolysin	lysis
UHGV-0076529_44	UniRef90	UniRef90_A0A0U1L0T6	Glycosyl hydrolase, family 25	NA
UHGV-0076529_44	eggNOG-mapper	1232428.CAVO010000067_gene417	Glycosyl hydrolases family 25	NA
UHGV-0076529_44	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0076529_44	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0076529_44	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0076529_46	KOfam	K04487	iscS, NFS1; cysteine desulfurase [EC:2.8.1.7]	NA
UHGV-0076529_46	PHROG	phrog_12787	NA	unknown function
UHGV-0076529_46	UniRef90	UniRef90_A0A413QUI0	Cysteine desulfurase	NA
UHGV-0076529_46	eggNOG-mapper	1273103.NM10_10170	Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins	NA
UHGV-0076529_46	PADLOC	DndA_00001	DndA	DND
UHGV-0076529_46	Pfam	PF00266	Aminotransferase class-V	Aminotran_5
UHGV-0076529_46	NCBIFam	NF002806.0	IscS subfamily cysteine desulfurase	NA
UHGV-0076529_46	COG	COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	NA
UHGV-0076529_46	Structural annotation	PF00266, MF_00331, TIGR03403, COG1104	NA	NA