UHGV-0076530

Genome information

Genome length 60,239 bps

CDS count 86

Completeness 96.39% (high-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076530
vOTU ID	vOTU-060595
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_129402
BioSample	SAMEA2737762
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.39% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.63
Jumbo phage	No

Genome content
Genome length	60,239 bps
GC content	47.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	86
CDS density	93.55%
Average CDS length	658.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076530_1	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0076530_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076530_1	UniRef90	UniRef90_A0A1M6P4Q0	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0076530_1	eggNOG-mapper	1232428.CAVO010000067_gene444	Helix-turn-helix XRE-family like proteins	NA
UHGV-0076530_1	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0076530_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076530_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0076530_1	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0076530_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0076530_2	UniRef90	UniRef90_UPI0009337F92	helix-turn-helix transcriptional regulator	NA
UHGV-0076530_2	eggNOG-mapper	1009370.ALO_12841	NA	NA
UHGV-0076530_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076530_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0076530_4	UniRef90	UniRef90_A0A2S0M9G3	XRE family transcriptional regulator	NA
UHGV-0076530_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0076530_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0076530_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0076530_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0076530_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0076530_5	UniRef90	UniRef90_UPI0014759289	phage antirepressor	NA
UHGV-0076530_5	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-0076530_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0076530_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0076530_5	COG	COG3617	Prophage antirepressor	NA
UHGV-0076530_5	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0076530_6	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0076530_6	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0076530_10	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0076530_10	UniRef90	UniRef90_UPI001472A545	siphovirus Gp157 family protein	NA
UHGV-0076530_10	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0076530_10	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0076530_10	Structural annotation	PF05565	NA	NA
UHGV-0076530_11	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0076530_11	UniRef90	UniRef90_UPI00147348AC	ERF family protein	NA
UHGV-0076530_11	eggNOG-mapper	525919.Apre_0805	ERF superfamily	NA
UHGV-0076530_11	Pfam	PF04404	ERF superfamily	ERF
UHGV-0076530_11	Structural annotation	PF04404, TIGR00607	NA	NA
UHGV-0076530_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0076530_12	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-0076530_13	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0076530_13	UniRef90	UniRef90_R2QIV7	DnaD domain-containing protein	NA
UHGV-0076530_13	eggNOG-mapper	290402.Cbei_3733	DnaD domain protein	NA
UHGV-0076530_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0076530_13	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0076530_14	PHROG	phrog_9804	NA	unknown function
UHGV-0076530_14	UniRef90	UniRef90_A0A1C5TFI8	Inhibitor_G39P domain-containing protein	NA
UHGV-0076530_14	eggNOG-mapper	97138.C820_00774	Loader and inhibitor of phage G40P	NA
UHGV-0076530_14	AcrCatalog	cluster_137185	NA	NA
UHGV-0076530_14	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0076530_14	Structural annotation	PF11417	NA	NA
UHGV-0076530_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076530_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076530_15	UniRef90	UniRef90_A0A355U095	Single-stranded DNA-binding protein	NA
UHGV-0076530_15	eggNOG-mapper	706434.HMPREF9429_00712	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0076530_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076530_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076530_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076530_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076530_15	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0076530_17	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0076530_17	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0076530_17	UniRef90	UniRef90_A0A2S0MAB6	dUTP diphosphatase	NA
UHGV-0076530_17	eggNOG-mapper	706434.HMPREF9429_00398	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0076530_17	Pfam	PF00692	dUTPase	dUTPase
UHGV-0076530_17	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0076530_17	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0076530_17	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0076530_18	PHROG	phrog_4074	NA	unknown function
UHGV-0076530_18	eggNOG-mapper	1232428.CAVO010000003_gene1016	NA	NA
UHGV-0076530_18	Structural annotation	TIGR04550	NA	NA
UHGV-0076530_20	PHROG	phrog_236	nucleotide kinase	other
UHGV-0076530_20	UniRef90	UniRef90_UPI000DA60B0D	NA	NA
UHGV-0076530_20	eggNOG-mapper	1209989.TepiRe1_2623	NA	NA
UHGV-0076530_20	Pfam	PF11753	NA	DUF3310
UHGV-0076530_22	PHROG	phrog_37395	NA	unknown function
UHGV-0076530_25	UniRef90	UniRef90_A0A2S0M9F1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0076530_25	eggNOG-mapper	1273103.NM10_01114	Endodeoxyribonuclease RusA	NA
UHGV-0076530_31	eggNOG-mapper	1273103.NM10_01139	NA	NA
UHGV-0076530_31	Pfam	PF05347	Complex 1 protein (LYR family)	Complex1_LYR
UHGV-0076530_32	PHROG	phrog_1672	NA	unknown function
UHGV-0076530_32	UniRef90	UniRef90_S7HT72	NA	NA
UHGV-0076530_33	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0076530_33	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0076530_33	UniRef90	UniRef90_A0A413QUD9	Cytosine-specific methyltransferase	NA
UHGV-0076530_33	eggNOG-mapper	1273103.NM10_02362	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0076530_33	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0076530_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0076530_33	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0076530_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0076530_33	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0076530_34	PHROG	phrog_11947	NA	unknown function
UHGV-0076530_42	PHROG	phrog_918	NA	unknown function
UHGV-0076530_42	UniRef90	UniRef90_UPI001D017B4D	NA	NA
UHGV-0076530_42	eggNOG-mapper	298338.Q5ULN6_9CAUD	NA	NA
UHGV-0076530_42	Pfam	PF19791	NA	DUF6275
UHGV-0076530_42	Structural annotation	PF19791	NA	NA
UHGV-0076530_44	PHROG	phrog_419	NA	unknown function
UHGV-0076530_44	UniRef90	UniRef90_A0A7U6KCT4	NA	NA
UHGV-0076530_44	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0076530_44	Structural annotation	PF14083	NA	NA
UHGV-0076530_46	PHROG	phrog_774	NA	unknown function
UHGV-0076530_46	Structural annotation	PF06657, MF_01506, TIGR03090	NA	NA
UHGV-0076530_47	PHROG	phrog_3878	NA	unknown function
UHGV-0076530_50	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0076530_50	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0076530_51	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0076530_51	eggNOG-mapper	158190.SpiGrapes_2456	radical SAM domain protein	NA
UHGV-0076530_51	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0076530_51	Structural annotation	MF_01865, NF038361, COG0621	NA	NA
UHGV-0076530_52	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076530_52	UniRef90	UniRef90_A0A3D2FXD6	AP2 domain-containing protein	NA
UHGV-0076530_52	eggNOG-mapper	478749.BRYFOR_06584	AP2 domain protein	NA
UHGV-0076530_52	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0076530_53	PHROG	phrog_14350	NA	unknown function
UHGV-0076530_53	UniRef90	UniRef90_W2E8K0	NA	NA
UHGV-0076530_53	eggNOG-mapper	679201.HMPREF9334_00497	NA	NA
UHGV-0076530_56	PHROG	phrog_15863	NA	unknown function
UHGV-0076530_56	UniRef90	UniRef90_A0A1U7M9V5	Chaperone protein DnaJ	NA
UHGV-0076530_56	eggNOG-mapper	471855.Shel_20200	Heat shock protein DnaJ domain protein	NA
UHGV-0076530_56	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0076530_58	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076530_58	UniRef90	UniRef90_F9MRE0	AP2 domain protein	NA
UHGV-0076530_58	eggNOG-mapper	879308.HMPREF9130_0377	NA	NA
UHGV-0076530_58	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0076530_60	PHROG	phrog_1233	NA	unknown function
UHGV-0076530_60	UniRef90	UniRef90_UPI000C850486	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0076530_60	eggNOG-mapper	1540257.JQMW01000009_gene3748	NA	NA
UHGV-0076530_60	Structural annotation	PF13058	NA	NA
UHGV-0076530_61	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0076530_61	UniRef90	UniRef90_A0A2S0M9J8	Transposase	NA
UHGV-0076530_61	eggNOG-mapper	1007096.BAGW01000022_gene2658	transposase activity	NA
UHGV-0076530_61	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0076530_61	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0076530_61	Structural annotation	PF07141	NA	NA
UHGV-0076530_62	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076530_62	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0076530_62	UniRef90	UniRef90_A0A6M3IX88	Putative terminase	NA
UHGV-0076530_62	eggNOG-mapper	1232428.CAVO010000067_gene427	DNA packaging	NA
UHGV-0076530_62	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076530_62	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0076530_63	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0076530_63	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-0076530_63	eggNOG-mapper	1232428.CAVO010000067_gene425	Membrane	NA
UHGV-0076530_63	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0076530_63	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0076530_65	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-0076530_66	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0076530_66	UniRef90	UniRef90_UPI000413677B	NA	NA
UHGV-0076530_66	eggNOG-mapper	1232428.CAVO010000067_gene423	NA	NA
UHGV-0076530_66	Pfam	PF17236	NA	DUF5309
UHGV-0076530_66	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-0076530_68	Structural annotation	PF20387	NA	NA
UHGV-0076530_69	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-0076530_69	Structural annotation	PF20387	NA	NA
UHGV-0076530_70	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-0076530_70	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0076530_70	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-0076530_71	PHROG	phrog_5417	NA	unknown function
UHGV-0076530_71	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-0076530_71	eggNOG-mapper	1589747.A0A0B5A4F6_9CAUD	NA	NA
UHGV-0076530_71	Structural annotation	PF12571	NA	NA
UHGV-0076530_72	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-0076530_72	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0076530_73	PHROG	phrog_5717	tail protein	tail
UHGV-0076530_73	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-0076530_73	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-0076530_73	COG	COG4675	Phage tail collar domain	NA
UHGV-0076530_74	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-0076530_74	COG	COG4675	Phage tail collar domain	NA
UHGV-0076530_75	PHROG	phrog_6465	tail protein	tail
UHGV-0076530_75	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0076530_75	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-0076530_75	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0076530_77	KOfam	K14059	int; integrase	NA
UHGV-0076530_77	PHROG	phrog_1	integrase	integration and excision
UHGV-0076530_77	UniRef90	UniRef90_A0A641X3J6	Tyrosine-type recombinase/integrase	NA
UHGV-0076530_77	eggNOG-mapper	1238184.CM001792_gene62	Phage integrase family	NA
UHGV-0076530_77	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076530_77	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076530_77	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0076530_78	PHROG	phrog_4105	NA	unknown function
UHGV-0076530_78	eggNOG-mapper	706434.HMPREF9429_00642	NA	NA
UHGV-0076530_79	PHROG	phrog_28789	NA	unknown function
UHGV-0076530_79	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-0076530_79	eggNOG-mapper	1273103.NM10_00934	NA	NA
UHGV-0076530_80	KOfam	K07273	acm; lysozyme	NA
UHGV-0076530_80	PHROG	phrog_291	endolysin	lysis
UHGV-0076530_80	UniRef90	UniRef90_A0A1M6N739	Glycosyl hydrolases family 25	NA
UHGV-0076530_80	eggNOG-mapper	1485543.JMME01000005_gene885	lysozyme activity	NA
UHGV-0076530_80	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0076530_80	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0076530_80	Structural annotation	PF01183, MF_00134_A, NF007266, COG3757	NA	NA
UHGV-0076530_82	eggNOG-mapper	1401067.HMPREF0872_03755	NA	NA
UHGV-0076530_82	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0076530_83	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0076530_84	UniRef90	UniRef90_A0A1G6NNF8	Intein N-terminal splicing region	NA
UHGV-0076530_84	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0076530_84	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0076530_84	Structural annotation	PF01079, NF038136	NA	NA
UHGV-0076530_86	PHROG	phrog_9854	NA	unknown function
UHGV-0076530_86	UniRef90	UniRef90_UPI0014728F49	transglycosylase SLT domain-containing protein	NA
UHGV-0076530_86	eggNOG-mapper	1232428.CAVO010000067_gene414	Type III restriction enzyme, res subunit	NA
UHGV-0076530_86	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0076530_86	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0076530_86	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0076530_86	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0076530_86	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA