UHGV-0076593

Genome information

Genome length 43,602 bps

CDS count 64

Completeness 76.72% (medium-quality)

geNomad score 0.9710

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076593
vOTU ID	vOTU-015441
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_122742
BioSample	SAMEA2580033
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	76.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9710
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.07
Jumbo phage	No

Genome content
Genome length	43,602 bps
GC content	51.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.18%
Average CDS length	610.69 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076593_1	KOfam	K08282	E2.7.11.1; non-specific serine/threonine protein kinase [EC:2.7.11.1]	NA
UHGV-0076593_1	PHROG	phrog_2361	serine-threonine kinase	other
UHGV-0076593_1	UniRef90	UniRef90_R5LHQ7	Kinase domain protein	NA
UHGV-0076593_1	eggNOG-mapper	1408322.JHYK01000012_gene676	Protein tyrosine kinase	NA
UHGV-0076593_1	PADLOC	shah_acc_0189	kinase	CRISPR-CAS
UHGV-0076593_1	Pfam	PF00069	Protein kinase domain	Pkinase
UHGV-0076593_1	Pfam	PF12799	Leucine Rich repeats (2 copies)	LRR_4
UHGV-0076593_1	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0076593_2	UniRef90	UniRef90_A0A1Y4BI90	Transcriptional regulator	NA
UHGV-0076593_2	eggNOG-mapper	1410658.JHWI01000005_gene864	NA	NA
UHGV-0076593_3	KOfam	K14059	int; integrase	NA
UHGV-0076593_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0076593_3	UniRef90	UniRef90_A0A3D4L580	Tyr recombinase domain-containing protein	NA
UHGV-0076593_3	eggNOG-mapper	1392502.JNIO01000002_gene105	Belongs to the 'phage' integrase family	NA
UHGV-0076593_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076593_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076593_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0076593_5	PHROG	phrog_2232	NA	unknown function
UHGV-0076593_5	UniRef90	UniRef90_UPI000C074118	NA	NA
UHGV-0076593_5	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-0076593_5	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0076593_5	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0076593_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076593_6	UniRef90	UniRef90_R5H5G1	Gp37	NA
UHGV-0076593_6	eggNOG-mapper	1507.HMPREF0262_00424	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0076593_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076593_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076593_6	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0076593_9	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0076593_9	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0076593_9	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-0076593_9	Structural annotation	PF13384, PF02796, NF040595, COG3415	NA	NA
UHGV-0076593_10	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0076593_10	UniRef90	UniRef90_R5GRF9	PAPS_reduct domain-containing protein	NA
UHGV-0076593_10	eggNOG-mapper	742740.HMPREF9474_02384	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0076593_10	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0076593_10	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0076593_10	Structural annotation	PF01507, MF_00063, TIGR02055, COG0175	NA	NA
UHGV-0076593_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076593_13	UniRef90	UniRef90_A0A7C6PS99	Endonuclease	NA
UHGV-0076593_13	eggNOG-mapper	857293.CAAU_0780	YqaJ-like viral recombinase domain	NA
UHGV-0076593_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0076593_13	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0076593_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0076593_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0076593_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0076593_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0076593_14	UniRef90	UniRef90_A0A3N4Q182	Recombinase	NA
UHGV-0076593_14	eggNOG-mapper	768704.Desmer_4478	RecT family	NA
UHGV-0076593_14	Pfam	PF03837	RecT family	RecT
UHGV-0076593_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0076593_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0076593_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076593_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076593_15	UniRef90	UniRef90_R5GS36	Single-stranded DNA-binding protein	NA
UHGV-0076593_15	eggNOG-mapper	411483.FAEPRAA2165_01975	Single-stranded DNA-binding protein	NA
UHGV-0076593_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076593_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076593_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076593_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076593_15	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0076593_16	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0076593_16	UniRef90	UniRef90_B1C7J8	DnaD domain protein	NA
UHGV-0076593_16	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0076593_16	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0076593_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0076593_16	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0076593_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0076593_17	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076593_17	UniRef90	UniRef90_A0A2V2FY53	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0076593_17	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-0076593_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0076593_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0076593_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0076593_18	PHROG	phrog_3136	NA	unknown function
UHGV-0076593_18	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0076593_18	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0076593_18	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0076593_19	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0076593_19	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076593_19	UniRef90	UniRef90_UPI00030ECFE8	HNH endonuclease	NA
UHGV-0076593_19	eggNOG-mapper	1007096.BAGW01000031_gene126	HNH endonuclease	NA
UHGV-0076593_19	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0076593_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0076593_19	Structural annotation	COG1403	NA	NA
UHGV-0076593_22	PHROG	phrog_29887	NA	unknown function
UHGV-0076593_23	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0076593_23	UniRef90	UniRef90_R5L7P6	Helix-turn-helix	NA
UHGV-0076593_23	eggNOG-mapper	1507.HMPREF0262_03440	Helix-turn-helix XRE-family like proteins	NA
UHGV-0076593_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076593_23	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076593_23	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0076593_25	Structural annotation	TIGR03090	NA	NA
UHGV-0076593_27	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0076593_27	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0076593_27	UniRef90	UniRef90_A0A0U1L2E6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0076593_27	eggNOG-mapper	1123288.SOV_2c03860	C-5 cytosine-specific DNA methylase	NA
UHGV-0076593_27	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0076593_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0076593_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0076593_27	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0076593_30	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0076593_30	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0076593_32	Structural annotation	PF05129, NF007260	NA	NA
UHGV-0076593_33	PHROG	phrog_10714	NA	unknown function
UHGV-0076593_33	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-0076593_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076593_34	UniRef90	UniRef90_R5GVZ3	Sigma70_r4 domain-containing protein	NA
UHGV-0076593_34	eggNOG-mapper	203119.Cthe_1732	sigma factor activity	NA
UHGV-0076593_34	Pfam	PF07374	NA	DUF1492
UHGV-0076593_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0076593_34	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0076593_35	PHROG	phrog_2412	NA	unknown function
UHGV-0076593_35	eggNOG-mapper	173707.Q938L4_9CAUD	NA	NA
UHGV-0076593_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076593_36	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0076593_36	UniRef90	UniRef90_UPI00041C320F	PBSX family phage terminase large subunit	NA
UHGV-0076593_36	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0076593_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0076593_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076593_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076593_36	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0076593_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-0076593_37	UniRef90	UniRef90_A0A349GP64	Portal protein	NA
UHGV-0076593_37	eggNOG-mapper	1460640.JCM19046_3520	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0076593_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0076593_37	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0076593_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0076593_38	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0076593_38	UniRef90	UniRef90_A0A1C6FMR4	Phage minor capsid protein 2	NA
UHGV-0076593_38	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0076593_38	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0076593_38	COG	COG2369	NA	NA
UHGV-0076593_38	Structural annotation	PF06152	NA	NA
UHGV-0076593_40	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0076593_40	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-0076593_40	eggNOG-mapper	1415775.U729_2604	NA	NA
UHGV-0076593_40	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0076593_41	PHROG	phrog_267	major head protein	head and packaging
UHGV-0076593_41	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0076593_41	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0076593_41	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0076593_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0076593_43	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0076593_43	UniRef90	UniRef90_A0A3R6PPU3	Minor capsid protein	NA
UHGV-0076593_43	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-0076593_43	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0076593_43	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0076593_43	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0076593_44	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0076593_44	UniRef90	UniRef90_A0A2Z4QA41	Minor capsid protein	NA
UHGV-0076593_44	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0076593_44	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0076593_44	Structural annotation	PF11114	NA	NA
UHGV-0076593_45	Structural annotation	PF12691	NA	NA
UHGV-0076593_46	PHROG	phrog_820	major tail protein	tail
UHGV-0076593_46	UniRef90	UniRef90_UPI000BFEA11C	capsid protein	NA
UHGV-0076593_46	eggNOG-mapper	1295642.H839_08339	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0076593_46	COG	COG5492	NA	NA
UHGV-0076593_46	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0076593_47	Structural annotation	PF10666	NA	NA
UHGV-0076593_48	PHROG	phrog_706	NA	unknown function
UHGV-0076593_48	UniRef90	UniRef90_A0A175A387	Bacteriophage Gp15 protein	NA
UHGV-0076593_48	eggNOG-mapper	1395513.P343_12620	Bacteriophage Gp15 protein	NA
UHGV-0076593_48	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0076593_48	Structural annotation	PF06854	NA	NA
UHGV-0076593_50	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0076593_50	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0076593_50	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0076593_50	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0076593_50	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0076593_51	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0076593_52	PHROG	phrog_6616	tail protein	tail
UHGV-0076593_52	eggNOG-mapper	1499683.CCFF01000014_gene3896	Phage minor structural protein	NA
UHGV-0076593_52	COG	COG4926	Phage-related protein	NA
UHGV-0076593_52	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0076593_53	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0076593_53	eggNOG-mapper	756499.Desde_1105	NA	NA
UHGV-0076593_53	Structural annotation	PF21621, PF21253, MF_01537, NF007875, COG3123	NA	NA
UHGV-0076593_55	PHROG	phrog_1863	NA	unknown function
UHGV-0076593_55	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-0076593_56	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0076593_57	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0076593_57	PHROG	phrog_15001	endolysin	lysis
UHGV-0076593_57	UniRef90	UniRef90_R5H0D9	N-acetylmuramoyl-L-alanine amidase domain protein	NA
UHGV-0076593_57	eggNOG-mapper	1235835.C814_01292	Ami_2	NA
UHGV-0076593_57	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0076593_57	COG	COG1388	LysM repeat	NA
UHGV-0076593_57	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0076593_58	KOfam	K14059	int; integrase	NA
UHGV-0076593_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0076593_58	UniRef90	UniRef90_A0A3D4D7J3	Site-specific integrase	NA
UHGV-0076593_58	eggNOG-mapper	742738.HMPREF9460_03649	Phage integrase family	NA
UHGV-0076593_58	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0076593_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076593_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076593_58	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0076593_59	UniRef90	UniRef90_UPI001D10D578	helix-turn-helix domain-containing protein	NA
UHGV-0076593_59	eggNOG-mapper	1507.HMPREF0262_03115	Helix-turn-helix domain	NA
UHGV-0076593_59	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0076593_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0076593_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076593_60	UniRef90	UniRef90_R5GQH0	Transcriptional regulator	NA
UHGV-0076593_60	eggNOG-mapper	1203606.HMPREF1526_02089	sequence-specific DNA binding	NA
UHGV-0076593_60	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0076593_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076593_60	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0076593_61	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0076593_61	UniRef90	UniRef90_R5GKN1	HTH cro/C1-type domain-containing protein	NA
UHGV-0076593_61	eggNOG-mapper	742740.HMPREF9474_02895	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0076593_61	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0076593_61	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0076593_61	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0076593_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076593_62	UniRef90	UniRef90_R5GYB4	HTH cro/C1-type domain-containing protein	NA
UHGV-0076593_62	eggNOG-mapper	397287.C807_03075	Helix-turn-helix XRE-family like proteins	NA
UHGV-0076593_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076593_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076593_62	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0076593_64	eggNOG-mapper	1238450.VIBNISOn1_p0090	oxidoreductase activity	NA
UHGV-0076593_64	Pfam	PF00092	von Willebrand factor type A domain	VWA
UHGV-0076593_64	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA