UHGV-0076628

Genome information

Genome length 42,912 bps

CDS count 71

Completeness 75.36% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076628
vOTU ID	vOTU-021191
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_119160
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.82
Jumbo phage	No

Genome content
Genome length	42,912 bps
GC content	37.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	89.63%
Average CDS length	543.55 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076628_2	UniRef90	UniRef90_UPI001D05EDA5	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0076628_2	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0076628_2	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0076628_4	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0076628_4	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0076628_5	PHROG	phrog_9804	NA	unknown function
UHGV-0076628_5	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-0076628_5	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0076628_5	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0076628_5	Structural annotation	PF11417	NA	NA
UHGV-0076628_7	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0076628_7	UniRef90	UniRef90_A0A2P1JTY8	DNA replication protein	NA
UHGV-0076628_7	eggNOG-mapper	1111134.HMPREF1253_0393	Transcriptional regulator	NA
UHGV-0076628_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0076628_7	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0076628_9	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0076628_9	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0076628_9	AcrCatalog	cluster_47493	NA	NA
UHGV-0076628_9	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0076628_12	PHROG	phrog_19106	NA	unknown function
UHGV-0076628_12	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0076628_12	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0076628_12	Structural annotation	TIGR01453	NA	NA
UHGV-0076628_13	PHROG	phrog_20593	NA	unknown function
UHGV-0076628_14	PHROG	phrog_10714	NA	unknown function
UHGV-0076628_14	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0076628_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076628_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076628_15	UniRef90	UniRef90_A0A1I6JG45	Single-stranded DNA-binding protein	NA
UHGV-0076628_15	eggNOG-mapper	622312.ROSEINA2194_04345	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0076628_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076628_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076628_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076628_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076628_15	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0076628_17	PHROG	phrog_1578	NA	unknown function
UHGV-0076628_17	eggNOG-mapper	637730.C8XUQ6_9CAUD	NA	NA
UHGV-0076628_18	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0076628_18	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0076628_18	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0076628_18	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0076628_18	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0076628_19	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0076628_19	UniRef90	UniRef90_A0A416JIG7	MBL fold metallo-hydrolase	NA
UHGV-0076628_19	eggNOG-mapper	443254.Marpi_0302	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0076628_19	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0076628_20	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076628_20	UniRef90	UniRef90_UPI00045E7F2C	HNH endonuclease	NA
UHGV-0076628_20	eggNOG-mapper	1345695.CLSA_c30140	NUMOD4 motif	NA
UHGV-0076628_20	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0076628_20	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0076628_20	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0076628_21	PHROG	phrog_25456	NA	unknown function
UHGV-0076628_22	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0076628_22	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0076628_22	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-0076628_22	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0076628_22	Pfam	PF03837	RecT family	RecT
UHGV-0076628_22	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0076628_22	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0076628_22	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0076628_23	PHROG	phrog_4433	NA	unknown function
UHGV-0076628_23	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-0076628_23	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0076628_23	Structural annotation	NF007410	NA	NA
UHGV-0076628_24	PHROG	phrog_1510	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0076628_24	UniRef90	UniRef90_F8WPQ1	Superinfection exclusion protein	NA
UHGV-0076628_24	eggNOG-mapper	10752.A0MZA8_BPN4	Pfam:Gp17	NA
UHGV-0076628_24	Pfam	PF17420	Superinfection exclusion gene product 17	GP17
UHGV-0076628_24	Structural annotation	PF17420	NA	NA
UHGV-0076628_25	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0076628_25	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076628_25	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0076628_25	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0076628_25	Pfam	PF13476	AAA domain	AAA_23
UHGV-0076628_25	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0076628_25	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0076628_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076628_27	PHROG	phrog_26861	NA	unknown function
UHGV-0076628_27	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-0076628_27	eggNOG-mapper	515620.EUBELI_01590	NA	NA
UHGV-0076628_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076628_27	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0076628_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076628_27	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0076628_30	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0076628_30	UniRef90	UniRef90_A0A285PXX7	ORF6C domain	NA
UHGV-0076628_30	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0076628_30	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0076628_30	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0076628_30	COG	COG3617	Prophage antirepressor	NA
UHGV-0076628_30	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0076628_31	UniRef90	UniRef90_A0A8D9UIR6	DNA-binding transcriptional regulator	NA
UHGV-0076628_31	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0076628_31	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0076628_32	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0076628_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076628_32	UniRef90	UniRef90_A0A8D9UIK2	HTH cro/C1-type domain-containing protein	NA
UHGV-0076628_32	eggNOG-mapper	445974.CLORAM_02966	Helix-turn-helix XRE-family like proteins	NA
UHGV-0076628_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076628_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076628_32	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-0076628_33	KOfam	K07273	acm; lysozyme	NA
UHGV-0076628_33	PHROG	phrog_6745	endolysin	lysis
UHGV-0076628_33	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0076628_33	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0076628_33	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0076628_33	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0076628_33	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0076628_35	PHROG	phrog_6616	tail protein	tail
UHGV-0076628_35	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0076628_35	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0076628_35	COG	COG4926	Phage-related protein	NA
UHGV-0076628_35	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0076628_36	Structural annotation	PF07761	NA	NA
UHGV-0076628_37	PHROG	phrog_1194	NA	unknown function
UHGV-0076628_37	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0076628_37	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0076628_40	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0076628_40	UniRef90	UniRef90_R7BHB1	Phage regulatory protein Rha family	NA
UHGV-0076628_40	eggNOG-mapper	33035.JPJF01000043_gene993	NA	NA
UHGV-0076628_40	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0076628_40	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0076628_40	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0076628_40	Structural annotation	NF033622, COG3646	NA	NA
UHGV-0076628_42	PHROG	phrog_23726	NA	unknown function
UHGV-0076628_42	UniRef90	UniRef90_A0A1M5TXV8	Zinc-ribbon domain-containing protein	NA
UHGV-0076628_42	eggNOG-mapper	1384484.AEQU_1334	cell wall organization	NA
UHGV-0076628_42	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0076628_43	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0076628_43	eggNOG-mapper	483218.BACPEC_01146	domain protein	NA
UHGV-0076628_43	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0076628_44	PHROG	phrog_28918	NA	unknown function
UHGV-0076628_44	UniRef90	UniRef90_A0A8D9PGP0	Minor tail protein	NA
UHGV-0076628_44	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0076628_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0076628_44	Structural annotation	PF20155	NA	NA
UHGV-0076628_46	PHROG	phrog_36112	NA	unknown function
UHGV-0076628_46	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0076628_46	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0076628_46	Structural annotation	PF10666	NA	NA
UHGV-0076628_48	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0076628_48	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0076628_49	Structural annotation	PF05657	NA	NA
UHGV-0076628_50	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0076628_51	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0076628_51	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0076628_52	PHROG	phrog_1129	holin	lysis
UHGV-0076628_52	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0076628_52	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0076628_52	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0076628_52	Structural annotation	PF06946	NA	NA
UHGV-0076628_53	PHROG	phrog_1863	NA	unknown function
UHGV-0076628_53	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0076628_55	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0076628_55	Structural annotation	PF21169	NA	NA
UHGV-0076628_56	PHROG	phrog_544	major head protein	head and packaging
UHGV-0076628_56	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-0076628_56	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-0076628_56	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0076628_56	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0076628_58	PHROG	phrog_64	portal protein	head and packaging
UHGV-0076628_58	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-0076628_58	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0076628_58	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0076628_58	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0076628_59	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0076628_60	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076628_60	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0076628_60	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0076628_60	Pfam	PF07374	NA	DUF1492
UHGV-0076628_60	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0076628_60	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0076628_61	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0076628_61	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-0076628_61	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0076628_61	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0076628_61	COG	COG5410	NA	NA
UHGV-0076628_61	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0076628_62	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0076628_62	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0076628_62	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0076628_68	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0076628_68	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-0076628_68	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0076628_69	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0076628_69	UniRef90	UniRef90_A0A412EKX5	Helix-turn-helix domain-containing protein	NA
UHGV-0076628_69	eggNOG-mapper	1122172.KB890259_gene1441	NA	NA
UHGV-0076628_69	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0076628_69	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0076628_69	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0076628_71	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0076628_71	UniRef90	UniRef90_R7BGE2	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0076628_71	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0076628_71	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0076628_71	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0076628_71	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA