UHGV-0076652

Genome information

Genome length 30,795 bps

CDS count 45

Completeness 87.21% (medium-quality)

geNomad score 0.9732

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076652
vOTU ID	vOTU-022676
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_130779
BioSample	SAMEA2737781
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9732
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.88
Jumbo phage	No

Genome content
Genome length	30,795 bps
GC content	51.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.40%
Average CDS length	643.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076652_6	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0076652_6	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0076652_6	UniRef90	UniRef90_U2K8A4	DNA-binding helix-turn-helix protein	NA
UHGV-0076652_6	eggNOG-mapper	596154.Alide2_1081	Helix-turn-helix domain	NA
UHGV-0076652_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0076652_6	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0076652_6	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0076652_9	PHROG	phrog_310	transposase	integration and excision
UHGV-0076652_9	UniRef90	UniRef90_U2LZ18	Integrase catalytic domain-containing protein	NA
UHGV-0076652_9	eggNOG-mapper	411473.RUMCAL_01908	Mu transposase, C-terminal	NA
UHGV-0076652_9	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0076652_9	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0076652_9	Pfam	PF00665	Integrase core domain	rve
UHGV-0076652_9	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0076652_9	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0076652_9	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0076652_10	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0076652_10	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0076652_10	UniRef90	UniRef90_R7FFF2	AAA domain protein	NA
UHGV-0076652_10	eggNOG-mapper	411473.RUMCAL_01909	AAA domain	NA
UHGV-0076652_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076652_10	Pfam	PF13401	AAA domain	AAA_22
UHGV-0076652_10	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0076652_10	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0076652_11	PHROG	phrog_4292	NA	unknown function
UHGV-0076652_11	UniRef90	UniRef90_A0A7G3VS96	Putative NHN endonuclease	NA
UHGV-0076652_11	eggNOG-mapper	411473.RUMCAL_01910	NA	NA
UHGV-0076652_12	PHROG	phrog_6244	NA	unknown function
UHGV-0076652_12	eggNOG-mapper	1232453.BAIF02000002_gene1275	YqaJ viral recombinase family	NA
UHGV-0076652_12	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0076652_13	PHROG	phrog_5671	NA	unknown function
UHGV-0076652_13	eggNOG-mapper	411473.RUMCAL_01912	NA	NA
UHGV-0076652_14	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0076652_14	eggNOG-mapper	411473.RUMCAL_01913	HNH endonuclease	NA
UHGV-0076652_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0076652_15	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0076652_15	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0076652_15	UniRef90	UniRef90_U2KRN6	IstB_IS21 domain-containing protein	NA
UHGV-0076652_15	eggNOG-mapper	411473.RUMCAL_01914	NA	NA
UHGV-0076652_15	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0076652_15	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0076652_15	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0076652_16	PHROG	phrog_286	NA	unknown function
UHGV-0076652_16	UniRef90	UniRef90_J6H7H7	PF06252 family protein	NA
UHGV-0076652_16	eggNOG-mapper	411473.RUMCAL_01915	NA	NA
UHGV-0076652_16	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0076652_16	Structural annotation	PF06252	NA	NA
UHGV-0076652_17	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-0076652_17	UniRef90	UniRef90_U2KR36	Mor transcription activator family protein	NA
UHGV-0076652_17	eggNOG-mapper	411473.RUMCAL_01916	Mor transcription activator	NA
UHGV-0076652_17	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0076652_17	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0076652_17	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0076652_18	PHROG	phrog_462	lipoprotein	other
UHGV-0076652_18	eggNOG-mapper	411473.RUMCAL_01917	NA	NA
UHGV-0076652_19	PHROG	phrog_25462	NA	unknown function
UHGV-0076652_19	UniRef90	UniRef90_A0A3C0QMV8	Type VI secretion protein	NA
UHGV-0076652_19	eggNOG-mapper	411473.RUMCAL_01918	NA	NA
UHGV-0076652_19	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0076652_20	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0076652_20	UniRef90	UniRef90_UPI001D05DC57	NA	NA
UHGV-0076652_20	eggNOG-mapper	411473.RUMCAL_01919	NA	NA
UHGV-0076652_20	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0076652_20	Structural annotation	PF11985	NA	NA
UHGV-0076652_21	KOfam	K05785	rfaH; transcriptional antiterminator RfaH	NA
UHGV-0076652_21	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0076652_21	UniRef90	UniRef90_U2K8B7	Transcription termination/antitermination factor NusG	NA
UHGV-0076652_21	eggNOG-mapper	411473.RUMCAL_01920	Transcription termination factor nusG	NA
UHGV-0076652_21	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0076652_21	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0076652_21	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0076652_22	UniRef90	UniRef90_W0U9H3	Phage terminase, small subunit	NA
UHGV-0076652_22	eggNOG-mapper	411473.RUMCAL_01921	NA	NA
UHGV-0076652_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076652_23	PHROG	phrog_10250	NA	unknown function
UHGV-0076652_23	UniRef90	UniRef90_U2LZ34	Phage terminase, large subunit, PBSX family	NA
UHGV-0076652_23	eggNOG-mapper	411473.RUMCAL_01923	Phage terminase, large subunit, PBSX family	NA
UHGV-0076652_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0076652_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076652_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076652_23	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0076652_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0076652_24	UniRef90	UniRef90_U2KRP5	Putative phage minor capsid protein	NA
UHGV-0076652_24	eggNOG-mapper	411473.RUMCAL_01924	NA	NA
UHGV-0076652_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0076652_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0076652_25	UniRef90	UniRef90_U2K8C2	Phage minor capsid protein 2	NA
UHGV-0076652_25	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-0076652_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0076652_25	COG	COG2369	NA	NA
UHGV-0076652_25	Structural annotation	PF06152	NA	NA
UHGV-0076652_27	PHROG	phrog_1048	NA	unknown function
UHGV-0076652_27	UniRef90	UniRef90_A0A3D5KWH4	NA	NA
UHGV-0076652_27	eggNOG-mapper	411473.RUMCAL_01927	NA	NA
UHGV-0076652_27	Pfam	PF11195	NA	DUF2829
UHGV-0076652_27	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0076652_27	Structural annotation	PF11195	NA	NA
UHGV-0076652_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0076652_28	UniRef90	UniRef90_R7FEY9	Phage minor structural protein GP20	NA
UHGV-0076652_28	eggNOG-mapper	411473.RUMCAL_01929	Phage minor structural protein GP20	NA
UHGV-0076652_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0076652_28	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0076652_29	PHROG	phrog_267	major head protein	head and packaging
UHGV-0076652_29	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0076652_29	eggNOG-mapper	411473.RUMCAL_01930	NA	NA
UHGV-0076652_29	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0076652_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0076652_30	eggNOG-mapper	641112.ACOK01000073_gene2896	NA	NA
UHGV-0076652_31	PHROG	phrog_3366	NA	unknown function
UHGV-0076652_31	eggNOG-mapper	411473.RUMCAL_01932	NA	NA
UHGV-0076652_31	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0076652_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0076652_32	UniRef90	UniRef90_T3DSR7	Minor capsid family protein	NA
UHGV-0076652_32	eggNOG-mapper	1151292.QEW_4532	Minor capsid protein	NA
UHGV-0076652_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0076652_32	Structural annotation	PF11114	NA	NA
UHGV-0076652_33	PHROG	phrog_3266	tail completion	connector
UHGV-0076652_33	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0076652_33	eggNOG-mapper	411473.RUMCAL_01934	NA	NA
UHGV-0076652_33	Structural annotation	PF12691	NA	NA
UHGV-0076652_34	PHROG	phrog_3099	NA	unknown function
UHGV-0076652_34	eggNOG-mapper	411473.RUMCAL_01935	NA	NA
UHGV-0076652_34	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0076652_35	PHROG	phrog_4450	NA	unknown function
UHGV-0076652_35	UniRef90	UniRef90_A0A355D9Y6	AP endonuclease	NA
UHGV-0076652_35	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-0076652_35	Pfam	PF20378	NA	DUF6673
UHGV-0076652_35	Structural annotation	PF20378	NA	NA
UHGV-0076652_36	PHROG	phrog_706	NA	unknown function
UHGV-0076652_36	UniRef90	UniRef90_B0G3B6	Bacteriophage Gp15 protein	NA
UHGV-0076652_36	eggNOG-mapper	411473.RUMCAL_01937	Bacteriophage Gp15 protein	NA
UHGV-0076652_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0076652_36	Structural annotation	PF06854	NA	NA
UHGV-0076652_37	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0076652_37	UniRef90	UniRef90_R7FII5	PhageMin_Tail domain-containing protein	NA
UHGV-0076652_37	eggNOG-mapper	411473.RUMCAL_01938	tail tape measure protein, TP901	NA
UHGV-0076652_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0076652_37	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0076652_37	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0076652_39	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-0076652_40	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-0076652_40	PHROG	phrog_25888	NA	unknown function
UHGV-0076652_40	UniRef90	UniRef90_U2KR58	Collagen triple helix repeat protein	NA
UHGV-0076652_40	eggNOG-mapper	411473.RUMCAL_01941	cell adhesion	NA
UHGV-0076652_40	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0076652_40	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0076652_40	Structural annotation	PF10651	NA	NA
UHGV-0076652_41	PHROG	phrog_35590	NA	unknown function
UHGV-0076652_41	eggNOG-mapper	411473.RUMCAL_00613	Collagen triple helix repeat (20 copies)	NA
UHGV-0076652_41	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0076652_41	Structural annotation	PF07675, NF038128	NA	NA
UHGV-0076652_43	PHROG	phrog_1129	holin	lysis
UHGV-0076652_43	UniRef90	UniRef90_A0A416MDZ9	Enolase	NA
UHGV-0076652_43	eggNOG-mapper	411473.RUMCAL_01944	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0076652_43	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0076652_43	Structural annotation	PF06946	NA	NA
UHGV-0076652_44	KOfam	K07273	acm; lysozyme	NA
UHGV-0076652_44	PHROG	phrog_291	endolysin	lysis
UHGV-0076652_44	UniRef90	UniRef90_U2K8D9	Glycosyl hydrolase family 25	NA
UHGV-0076652_44	eggNOG-mapper	411473.RUMCAL_01945	hydrolase, family 25	NA
UHGV-0076652_44	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0076652_44	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0076652_44	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0076652_44	Structural annotation	PF01183, PF08291, NF007557, COG3757, COG3108	NA	NA
UHGV-0076652_45	KOfam	K00965	galT, GALT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]	NA
UHGV-0076652_45	UniRef90	UniRef90_A0A374EB95	Galactose-1-phosphate uridylyltransferase	NA
UHGV-0076652_45	eggNOG-mapper	411473.RUMCAL_02091	Galactose-1-phosphate uridyl transferase, C-terminal domain	NA
UHGV-0076652_45	Pfam	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain	GalP_UDP_transf
UHGV-0076652_45	Pfam	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain	GalP_UDP_tr_C
UHGV-0076652_45	NCBIFam	NF003629.0	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA
UHGV-0076652_45	COG	COG4468	Galactose-1-phosphate uridylyltransferase	NA
UHGV-0076652_45	HAMAP	MF_00571	Galactose-1-phosphate uridylyltransferase [galT]	NA