UHGV-0076716

Genome information

Genome length 25,785 bps

CDS count 30

Completeness 57.35% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076716
vOTU ID	vOTU-042275
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_120886
BioSample	SAMEA2579969
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.91
Jumbo phage	No

Genome content
Genome length	25,785 bps
GC content	28.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	88.11%
Average CDS length	758.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076716_1	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0076716_1	UniRef90	UniRef90_UPI0018973099	helix-turn-helix domain-containing protein	NA
UHGV-0076716_1	eggNOG-mapper	1280692.AUJL01000004_gene860	Helix-turn-helix domain of resolvase	NA
UHGV-0076716_2	PHROG	phrog_10934	NA	unknown function
UHGV-0076716_2	eggNOG-mapper	1140001.I571_01804	NA	NA
UHGV-0076716_3	PHROG	phrog_15827	NA	unknown function
UHGV-0076716_3	UniRef90	UniRef90_Q97HU4	Zn-finger containing protein	NA
UHGV-0076716_3	eggNOG-mapper	1499683.CCFF01000005_gene61	DNA-directed 5'-3' RNA polymerase activity	NA
UHGV-0076716_3	COG	COG1996	DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger	NA
UHGV-0076716_3	Structural annotation	PF09723, TIGR02605, COG1996	NA	NA
UHGV-0076716_4	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076716_4	UniRef90	UniRef90_A0A1C6KPB0	NA	NA
UHGV-0076716_4	eggNOG-mapper	1380600.AUYN01000001_gene2754	NA	NA
UHGV-0076716_4	Pfam	PF13643	NA	DUF4145
UHGV-0076716_4	Structural annotation	PF13643, COG2445	NA	NA
UHGV-0076716_5	PHROG	phrog_14112	NA	unknown function
UHGV-0076716_5	eggNOG-mapper	1280692.AUJL01000004_gene854	TIGRFAM Phage	NA
UHGV-0076716_5	COG	COG5362	Phage terminase large subunit	NA
UHGV-0076716_5	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0076716_6	PHROG	phrog_64	portal protein	head and packaging
UHGV-0076716_6	UniRef90	UniRef90_UPI00189A57BB	phage portal protein	NA
UHGV-0076716_6	eggNOG-mapper	1280692.AUJL01000004_gene853	portal protein, SPP1 Gp6-like	NA
UHGV-0076716_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0076716_6	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0076716_7	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0076716_7	UniRef90	UniRef90_UPI001897B00C	minor capsid protein	NA
UHGV-0076716_7	eggNOG-mapper	1499683.CCFF01000017_gene2578	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0076716_7	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0076716_7	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0076716_7	COG	COG2369	NA	NA
UHGV-0076716_7	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0076716_8	PHROG	phrog_8614	NA	unknown function
UHGV-0076716_8	UniRef90	UniRef90_UPI0018984C47	P-loop NTPase fold protein	NA
UHGV-0076716_8	eggNOG-mapper	1216932.CM240_3261	KAP family P-loop domain	NA
UHGV-0076716_8	PADLOC	PifA	PifA	Abi
UHGV-0076716_8	Pfam	PF07693	KAP family P-loop domain	KAP_NTPase
UHGV-0076716_8	COG	COG4928	Predicted P-loop ATPase, KAP-like	NA
UHGV-0076716_9	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0076716_9	UniRef90	UniRef90_UPI0006C704D6	NA	NA
UHGV-0076716_9	eggNOG-mapper	1280692.AUJL01000004_gene848	NA	NA
UHGV-0076716_9	Pfam	PF14265	NA	DUF4355
UHGV-0076716_9	Structural annotation	PF14265	NA	NA
UHGV-0076716_10	PHROG	phrog_909	major head protein	head and packaging
UHGV-0076716_10	UniRef90	UniRef90_UPI001D2572A1	head decoration protein	NA
UHGV-0076716_10	eggNOG-mapper	1280692.AUJL01000004_gene847	NA	NA
UHGV-0076716_11	PHROG	phrog_29	major head protein	head and packaging
UHGV-0076716_11	UniRef90	UniRef90_A0A1C6KXX0	Phage major capsid protein E	NA
UHGV-0076716_11	eggNOG-mapper	1280692.AUJL01000004_gene846	Phage major capsid protein E	NA
UHGV-0076716_11	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0076716_11	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0076716_12	eggNOG-mapper	1540257.JQMW01000013_gene740	NA	NA
UHGV-0076716_13	PHROG	phrog_3366	NA	unknown function
UHGV-0076716_13	eggNOG-mapper	1540257.JQMW01000013_gene739	NA	NA
UHGV-0076716_13	Pfam	PF20536	NA	DUF6751
UHGV-0076716_13	Structural annotation	PF20536	NA	NA
UHGV-0076716_14	eggNOG-mapper	318464.IO99_00565	NA	NA
UHGV-0076716_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0076716_15	UniRef90	UniRef90_UPI000DD031E8	minor capsid protein	NA
UHGV-0076716_15	eggNOG-mapper	573061.Clocel_3538	Minor capsid protein	NA
UHGV-0076716_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0076716_15	Structural annotation	PF11114	NA	NA
UHGV-0076716_16	PHROG	phrog_3266	tail completion	connector
UHGV-0076716_16	UniRef90	UniRef90_UPI000DCF807F	chloramphenicol resistance protein	NA
UHGV-0076716_16	eggNOG-mapper	1540257.JQMW01000013_gene737	NA	NA
UHGV-0076716_16	Structural annotation	PF12691	NA	NA
UHGV-0076716_17	PHROG	phrog_3099	NA	unknown function
UHGV-0076716_17	eggNOG-mapper	573061.Clocel_3536	NA	NA
UHGV-0076716_17	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-0076716_18	PHROG	phrog_4450	NA	unknown function
UHGV-0076716_18	UniRef90	UniRef90_UPI000DCFA8D5	AP endonuclease	NA
UHGV-0076716_18	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0076716_18	Pfam	PF20378	NA	DUF6673
UHGV-0076716_18	Structural annotation	PF20378	NA	NA
UHGV-0076716_19	PHROG	phrog_706	NA	unknown function
UHGV-0076716_19	UniRef90	UniRef90_UPI000DD015CA	bacteriophage Gp15 family protein	NA
UHGV-0076716_19	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0076716_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0076716_19	Structural annotation	PF06854	NA	NA
UHGV-0076716_20	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0076716_20	UniRef90	UniRef90_UPI000DD03AB1	phage tail tape measure protein	NA
UHGV-0076716_20	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0076716_20	COG	COG1511	NA	NA
UHGV-0076716_21	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0076716_21	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0076716_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0076716_22	UniRef90	UniRef90_UPI000DCFB6E8	phage tail family protein	NA
UHGV-0076716_22	eggNOG-mapper	573061.Clocel_0222	tail component	NA
UHGV-0076716_22	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0076716_22	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0076716_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-0076716_22	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0076716_23	PHROG	phrog_7043	tail protein	tail
UHGV-0076716_23	UniRef90	UniRef90_UPI000DD08AA5	phage tail protein	NA
UHGV-0076716_23	eggNOG-mapper	1499683.CCFF01000005_gene80	Phage minor structural protein	NA
UHGV-0076716_23	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0076716_23	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0076716_23	COG	COG4926	Phage-related protein	NA
UHGV-0076716_25	PHROG	phrog_4577	tail protein	tail
UHGV-0076716_25	UniRef90	UniRef90_A0A091CAK0	Gp19 family putative tail/base plate protein	NA
UHGV-0076716_25	eggNOG-mapper	169963.lmo2284	NA	NA
UHGV-0076716_26	eggNOG-mapper	1497679.EP56_10635	NA	NA
UHGV-0076716_27	PHROG	phrog_1863	NA	unknown function
UHGV-0076716_27	eggNOG-mapper	1414720.CBYM010000002_gene554	NA	NA
UHGV-0076716_28	PHROG	phrog_1129	holin	lysis
UHGV-0076716_28	UniRef90	UniRef90_UPI0018972519	phage holin family protein	NA
UHGV-0076716_28	eggNOG-mapper	1294142.CINTURNW_1047	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0076716_28	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0076716_28	Structural annotation	PF16079	NA	NA
UHGV-0076716_29	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0076716_29	PHROG	phrog_435	endolysin	lysis
UHGV-0076716_29	UniRef90	UniRef90_UPI000D3C5B2F	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076716_29	eggNOG-mapper	1408437.JNJN01000047_gene708	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0076716_29	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0076716_29	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076716_30	UniRef90	UniRef90_UPI001C0BF32C	bacteriophage abortive infection AbiH family protein	NA
UHGV-0076716_30	eggNOG-mapper	573061.Clocel_3853	Bacteriophage abortive infection AbiH	NA
UHGV-0076716_30	Pfam	PF14253	Bacteriophage abortive infection AbiH	AbiH
UHGV-0076716_30	Structural annotation	PF14253	NA	NA