UHGV-0076720

Genome information

Genome length 40,581 bps

CDS count 55

Completeness 98.04% (high-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076720
vOTU ID	vOTU-014045
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_120881
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.04% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.34
Jumbo phage	No

Genome content
Genome length	40,581 bps
GC content	59.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	90.39%
Average CDS length	669.16 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076720_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0076720_1	PHROG	phrog_19265	NA	unknown function
UHGV-0076720_1	UniRef90	UniRef90_A0A1X3AAC5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076720_1	eggNOG-mapper	566552.BIFCAT_00851	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076720_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0076720_1	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0076720_1	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0076720_2	PHROG	phrog_263	holin	lysis
UHGV-0076720_2	UniRef90	UniRef90_A0A1X3AA97	Holin, SPP1 family	NA
UHGV-0076720_2	eggNOG-mapper	566552.BIFCAT_00852	SPP1 phage holin	NA
UHGV-0076720_2	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0076720_3	PHROG	phrog_1397	NA	unknown function
UHGV-0076720_3	UniRef90	UniRef90_A0A3D0Q191	PRTRC system protein E	NA
UHGV-0076720_3	eggNOG-mapper	1680.BADO_1218	NA	NA
UHGV-0076720_4	eggNOG-mapper	566552.BIFCAT_00857	NA	NA
UHGV-0076720_5	PHROG	phrog_21973	tail protein	tail
UHGV-0076720_5	eggNOG-mapper	566552.BIFCAT_00858	nuclear chromosome segregation	NA
UHGV-0076720_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0076720_6	PHROG	phrog_1885	minor tail protein	tail
UHGV-0076720_6	UniRef90	UniRef90_A0A087B699	Putative major tail protein	NA
UHGV-0076720_6	eggNOG-mapper	566552.BIFCAT_00859	NA	NA
UHGV-0076720_6	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0076720_7	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-0076720_7	UniRef90	UniRef90_A0A087B698	Putative phage protein gp45	NA
UHGV-0076720_7	eggNOG-mapper	566552.BIFCAT_00860	NA	NA
UHGV-0076720_7	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-0076720_8	PHROG	phrog_5577	minor tail protein	tail
UHGV-0076720_8	UniRef90	UniRef90_W4N9I3	Phage tail domain protein	NA
UHGV-0076720_8	eggNOG-mapper	566552.BIFCAT_00861	NA	NA
UHGV-0076720_8	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0076720_9	PHROG	phrog_4197	tail length tape measure protein	tail
UHGV-0076720_9	UniRef90	UniRef90_B6XUH7	Tape measure domain protein	NA
UHGV-0076720_9	eggNOG-mapper	566552.BIFCAT_00862	Transglycosylase SLT domain	NA
UHGV-0076720_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0076720_9	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0076720_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0076720_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0076720_9	Structural annotation	PF20155, NF033742, COG3941	NA	NA
UHGV-0076720_10	eggNOG-mapper	1435051.BMOU_0770	NA	NA
UHGV-0076720_11	PHROG	phrog_5010	tail assembly chaperone	tail
UHGV-0076720_11	eggNOG-mapper	566552.BIFCAT_00864	NA	NA
UHGV-0076720_12	PHROG	phrog_476	major tail protein	tail
UHGV-0076720_12	UniRef90	UniRef90_A0A087DI33	Major tail subunit	NA
UHGV-0076720_12	eggNOG-mapper	1435051.BMOU_0772	NA	NA
UHGV-0076720_12	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0076720_13	eggNOG-mapper	1435051.BMOU_0773	NA	NA
UHGV-0076720_13	Structural annotation	PF16807, NF040576, COG3167	NA	NA
UHGV-0076720_14	eggNOG-mapper	1435051.BMOU_0774	NA	NA
UHGV-0076720_14	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0076720_15	eggNOG-mapper	1435051.BMOU_0775	NA	NA
UHGV-0076720_16	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0076720_16	UniRef90	UniRef90_A0A1X2ZNE2	Mobile element protein	NA
UHGV-0076720_16	eggNOG-mapper	1435051.BMOU_0776	NA	NA
UHGV-0076720_16	Structural annotation	TIGR02215	NA	NA
UHGV-0076720_17	KOfam	K06904	NA	NA
UHGV-0076720_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0076720_17	UniRef90	UniRef90_A0A6A2RR94	HK97 family phage prohead protease	NA
UHGV-0076720_17	eggNOG-mapper	1435051.BMOU_0777	Phage capsid family	NA
UHGV-0076720_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0076720_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0076720_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0076720_17	COG	COG3740	Phage head maturation protease	NA
UHGV-0076720_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0076720_18	UniRef90	UniRef90_A0A1X3AA46	PE-PGRS family protein	NA
UHGV-0076720_18	eggNOG-mapper	1435051.BMOU_0778	Phage portal protein	NA
UHGV-0076720_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0076720_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0076720_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0076720_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0076720_20	UniRef90	UniRef90_W4NAK9	Terminase	NA
UHGV-0076720_20	eggNOG-mapper	1435051.BMOU_0780	Phage Terminase	NA
UHGV-0076720_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0076720_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0076720_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0076720_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0076720_21	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0076720_21	UniRef90	UniRef90_A0A1X3A9X3	Terminase	NA
UHGV-0076720_21	eggNOG-mapper	158787.BSCA_1010	Phage terminase, small subunit	NA
UHGV-0076720_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0076720_21	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0076720_21	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0076720_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0076720_22	eggNOG-mapper	1394176.AWUO01000014_gene667	NA	NA
UHGV-0076720_25	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076720_25	UniRef90	UniRef90_A0A1X2ZMQ9	G28 phagic protein	NA
UHGV-0076720_25	eggNOG-mapper	1437610.BREU_3940	NA	NA
UHGV-0076720_25	Structural annotation	PF12728, NF033499, COG3311	NA	NA
UHGV-0076720_26	PHROG	phrog_908	NA	unknown function
UHGV-0076720_26	UniRef90	UniRef90_UPI000E4019F0	helix-turn-helix domain-containing protein	NA
UHGV-0076720_26	eggNOG-mapper	566552.BIFCAT_00879	tRNA 5'-leader removal	NA
UHGV-0076720_26	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0076720_26	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-0076720_26	Structural annotation	COG0789	NA	NA
UHGV-0076720_27	UniRef90	UniRef90_A0A3D1TL16	Antitoxin	NA
UHGV-0076720_27	eggNOG-mapper	566552.BIFCAT_00880	NA	NA
UHGV-0076720_32	Structural annotation	PF07073	NA	NA
UHGV-0076720_33	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-0076720_33	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0076720_33	UniRef90	UniRef90_UPI000E416F79	oligoribonuclease	NA
UHGV-0076720_33	eggNOG-mapper	566552.BIFCAT_00884	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0076720_33	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0076720_33	Structural annotation	PF00929, MF_00045, NF003765, COG1949	NA	NA
UHGV-0076720_34	PHROG	phrog_14515	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076720_34	UniRef90	UniRef90_A0A0B5BGU1	Restriction endonuclease	NA
UHGV-0076720_34	eggNOG-mapper	566552.BIFCAT_00885	HNH endonuclease	NA
UHGV-0076720_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0076720_35	eggNOG-mapper	566552.BIFCAT_00886	NA	NA
UHGV-0076720_36	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0076720_36	UniRef90	UniRef90_A0A6A2RLX9	Helix-turn-helix domain-containing protein	NA
UHGV-0076720_36	eggNOG-mapper	566552.BIFCAT_00887	Transcriptional regulator	NA
UHGV-0076720_36	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0076720_36	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0076720_36	Structural annotation	PF01978, TIGR01610, COG5529	NA	NA
UHGV-0076720_37	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0076720_37	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0076720_37	UniRef90	UniRef90_UPI000E407895	ParB/RepB/Spo0J family partition protein	NA
UHGV-0076720_37	eggNOG-mapper	398513.BBNG_00827	ParB-like nuclease domain	NA
UHGV-0076720_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0076720_37	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0076720_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0076720_37	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0076720_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076720_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076720_38	UniRef90	UniRef90_A0A174A1C7	Single-stranded DNA-binding protein	NA
UHGV-0076720_38	eggNOG-mapper	398513.BBNG_00826	Single-strand binding protein family	NA
UHGV-0076720_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076720_38	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0076720_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076720_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076720_38	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0076720_40	eggNOG-mapper	702459.BBPR_0888	NA	NA
UHGV-0076720_43	UniRef90	UniRef90_A0A8A7IPC2	DNA-binding protein	NA
UHGV-0076720_43	eggNOG-mapper	78345.BMERY_0902	NA	NA
UHGV-0076720_44	UniRef90	UniRef90_UPI000CC69768	NA	NA
UHGV-0076720_44	Structural annotation	PF21633, NF011823, COG3121	NA	NA
UHGV-0076720_46	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0076720_46	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0076720_46	UniRef90	UniRef90_A0A1X2ZMN4	Phage antirepressor protein	NA
UHGV-0076720_46	eggNOG-mapper	78345.BMERY_0904	BRO family, N-terminal domain	NA
UHGV-0076720_46	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0076720_46	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0076720_46	COG	COG3617	Prophage antirepressor	NA
UHGV-0076720_46	Structural annotation	PF03374, PF10547, TIGR02681, COG3617	NA	NA
UHGV-0076720_48	eggNOG-mapper	702459.BBPR_0880	NA	NA
UHGV-0076720_49	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0076720_49	UniRef90	UniRef90_A0A1X3A9U8	DNA-binding protein	NA
UHGV-0076720_49	eggNOG-mapper	445975.COLSTE_01138	KilA-N	NA
UHGV-0076720_49	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0076720_49	Structural annotation	PF04383, NF033622, COG3943	NA	NA
UHGV-0076720_50	PHROG	phrog_87	metallo-protease	other
UHGV-0076720_50	UniRef90	UniRef90_A0A1X2ZML2	Peptidase_M78 domain-containing protein	NA
UHGV-0076720_50	eggNOG-mapper	702459.BBPR_0878	NA	NA
UHGV-0076720_50	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0076720_50	Structural annotation	PF06114, COG3800	NA	NA
UHGV-0076720_51	eggNOG-mapper	1680.BADO_1275	NA	NA
UHGV-0076720_52	UniRef90	UniRef90_W4NAH9	Peptidoglycan associated protein	NA
UHGV-0076720_52	eggNOG-mapper	1435051.BMOU_0748	serine threonine protein kinase	NA
UHGV-0076720_52	COG	COG2815	PASTA domain, binds beta-lactams	NA
UHGV-0076720_54	eggNOG-mapper	547043.BIFPSEUDO_03244	NA	NA
UHGV-0076720_55	KOfam	K14059	int; integrase	NA
UHGV-0076720_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0076720_55	UniRef90	UniRef90_A0A087E4H8	Site-specific recombinase, phage integrase family	NA
UHGV-0076720_55	eggNOG-mapper	78345.BMERY_0915	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0076720_55	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0076720_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076720_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076720_55	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA