UHGV-0076730

Genome information

vOTU vOTU-019918

Genome length 33,177 bps

CDS count 44

Completeness 86.44% (medium-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076730
vOTU ID	vOTU-019918
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_118307
BioSample	SAMEA2580072
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	4.56
Jumbo phage	No

Genome content
Genome length	33,177 bps
GC content	43.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.36%
Average CDS length	699.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076730_1	KOfam	K18887	efrA, efrE; ATP-binding cassette, subfamily B, multidrug efflux pump	NA
UHGV-0076730_1	PHROG	phrog_2392	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0076730_1	UniRef90	UniRef90_A0A1C6CPF0	Putative multidrug export ATP-binding/permease protein SAV1866	NA
UHGV-0076730_1	eggNOG-mapper	585394.RHOM_04855	Abc transporter	NA
UHGV-0076730_1	Pfam	PF00664	ABC transporter transmembrane region	ABC_membrane
UHGV-0076730_1	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0076730_1	COG	COG1132	ABC-type multidrug transport system, ATPase and permease component	NA
UHGV-0076730_2	KOfam	K18888	efrB, efrF; ATP-binding cassette, subfamily B, multidrug efflux pump	NA
UHGV-0076730_2	PHROG	phrog_2392	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0076730_2	UniRef90	UniRef90_A0A1C6CPQ7	Probable multidrug resistance ABC transporter ATP-binding/permease protein YheH	NA
UHGV-0076730_2	eggNOG-mapper	511680.BUTYVIB_01098	ABC transporter transmembrane region	NA
UHGV-0076730_2	Pfam	PF00664	ABC transporter transmembrane region	ABC_membrane
UHGV-0076730_2	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0076730_2	COG	COG1132	ABC-type multidrug transport system, ATPase and permease component	NA
UHGV-0076730_2	Structural annotation	PF00664, PF00005, MF_01005, TIGR02204, COG1132	NA	NA
UHGV-0076730_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0076730_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0076730_3	UniRef90	UniRef90_A0A416MNB4	Zn_ribbon_recom domain-containing protein	NA
UHGV-0076730_3	eggNOG-mapper	1235798.C817_01900	Resolvase, N terminal domain	NA
UHGV-0076730_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0076730_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0076730_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0076730_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0076730_3	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0076730_5	eggNOG-mapper	1123263.AUKY01000072_gene2115	NA	NA
UHGV-0076730_6	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0076730_6	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0076730_6	UniRef90	UniRef90_A0A416ZS29	XRE family transcriptional regulator	NA
UHGV-0076730_6	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0076730_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076730_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0076730_8	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0076730_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076730_8	UniRef90	UniRef90_A0A4S2A8B1	XRE family transcriptional regulator	NA
UHGV-0076730_8	eggNOG-mapper	411470.RUMGNA_02181	DNA-binding helix-turn-helix protein	NA
UHGV-0076730_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076730_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076730_8	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0076730_10	PHROG	phrog_31760	NA	unknown function
UHGV-0076730_14	Structural annotation	NF001981	NA	NA
UHGV-0076730_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0076730_16	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0076730_16	eggNOG-mapper	411470.RUMGNA_00203	COG NOG14934 non supervised orthologous group	NA
UHGV-0076730_17	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0076730_17	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0076730_17	UniRef90	UniRef90_A0A416MNG6	ParA family protein	NA
UHGV-0076730_17	eggNOG-mapper	411470.RUMGNA_00210	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0076730_17	Pfam	PF13614	AAA domain	AAA_31
UHGV-0076730_17	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0076730_17	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0076730_18	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0076730_18	PHROG	phrog_15982	NA	unknown function
UHGV-0076730_18	UniRef90	UniRef90_A0A416MNB0	NA	NA
UHGV-0076730_18	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-0076730_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0076730_18	Pfam	PF12961	NA	DUF3850
UHGV-0076730_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0076730_18	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0076730_19	PHROG	phrog_7566	NA	unknown function
UHGV-0076730_19	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0076730_20	Structural annotation	PF05225, NF040595	NA	NA
UHGV-0076730_22	UniRef90	UniRef90_A0A1C5TF07	NA	NA
UHGV-0076730_22	eggNOG-mapper	742733.HMPREF9469_00921	NA	NA
UHGV-0076730_22	Pfam	PF04448	NA	DUF551
UHGV-0076730_22	Structural annotation	NF041588	NA	NA
UHGV-0076730_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076730_24	UniRef90	UniRef90_A0A416MN03	Sigma70_r4 domain-containing protein	NA
UHGV-0076730_24	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0076730_24	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0076730_24	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0076730_25	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0076730_25	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-0076730_25	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0076730_25	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0076730_25	Structural annotation	PF07141	NA	NA
UHGV-0076730_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076730_26	PHROG	phrog_10250	NA	unknown function
UHGV-0076730_26	UniRef90	UniRef90_A0A416KE31	Terminase	NA
UHGV-0076730_26	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0076730_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076730_26	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0076730_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0076730_27	UniRef90	UniRef90_A0A6L8XU40	Capsid protein	NA
UHGV-0076730_27	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0076730_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0076730_28	PHROG	phrog_25639	NA	unknown function
UHGV-0076730_28	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0076730_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0076730_29	UniRef90	UniRef90_A0A416Q253	Minor capsid protein	NA
UHGV-0076730_29	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0076730_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0076730_29	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0076730_29	Structural annotation	PF06152	NA	NA
UHGV-0076730_31	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0076730_31	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0076730_31	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0076730_32	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0076730_32	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0076730_32	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0076730_33	PHROG	phrog_422	major head protein	head and packaging
UHGV-0076730_33	UniRef90	UniRef90_A0A1Y4R5U9	Phage capsid protein	NA
UHGV-0076730_33	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0076730_33	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0076730_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0076730_34	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0076730_35	PHROG	phrog_8710	NA	unknown function
UHGV-0076730_35	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0076730_35	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0076730_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0076730_36	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0076730_37	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0076730_37	UniRef90	UniRef90_UPI001C0EB705	minor capsid protein	NA
UHGV-0076730_37	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0076730_37	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0076730_37	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0076730_38	PHROG	phrog_820	major tail protein	tail
UHGV-0076730_38	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0076730_38	Structural annotation	PF06199, TIGR02241, COG5437	NA	NA
UHGV-0076730_39	PHROG	phrog_8300	NA	unknown function
UHGV-0076730_39	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0076730_39	Structural annotation	PF06854	NA	NA
UHGV-0076730_40	PHROG	phrog_8355	NA	unknown function
UHGV-0076730_40	UniRef90	UniRef90_UPI001ADD7ADE	Gp15 family bacteriophage protein	NA
UHGV-0076730_40	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0076730_41	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0076730_41	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-0076730_41	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0076730_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0076730_42	PHROG	phrog_1194	NA	unknown function
UHGV-0076730_42	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0076730_42	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0076730_43	PHROG	phrog_6616	tail protein	tail
UHGV-0076730_43	UniRef90	UniRef90_A0A3D3U8S7	Peptidase S74 domain-containing protein	NA
UHGV-0076730_43	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0076730_43	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0076730_43	COG	COG4926	Phage-related protein	NA
UHGV-0076730_43	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0076730_44	PHROG	phrog_16164	NA	unknown function
UHGV-0076730_44	eggNOG-mapper	742733.HMPREF9469_01804	NA	NA