UHGV-0076769

Genome information

Genome length 21,328 bps

CDS count 44

Completeness 53.04% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076769
vOTU ID	vOTU-040259
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_114141
BioSample	SAMEA2580052
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.82
Jumbo phage	No

Genome content
Genome length	21,328 bps
GC content	58.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	90.28%
Average CDS length	439.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076769_2	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0076769_2	UniRef90	UniRef90_A0A8A9ICF6	CdiA_C domain-containing protein	NA
UHGV-0076769_2	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-0076769_3	PHROG	phrog_104	portal protein	head and packaging
UHGV-0076769_3	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-0076769_3	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0076769_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0076769_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0076769_4	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-0076769_4	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-0076769_4	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0076769_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0076769_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0076769_6	PHROG	phrog_8680	NA	unknown function
UHGV-0076769_6	UniRef90	UniRef90_A0A087DRQ2	ParB-like protein	NA
UHGV-0076769_6	eggNOG-mapper	1680.BADO_1246	NA	NA
UHGV-0076769_6	Pfam	PF14386	NA	DUF4417
UHGV-0076769_7	PHROG	phrog_226	minor tail protein	tail
UHGV-0076769_7	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-0076769_8	UniRef90	UniRef90_A0A6B8LMD9	Hypoyhetical protein	NA
UHGV-0076769_9	PHROG	phrog_908	NA	unknown function
UHGV-0076769_9	UniRef90	UniRef90_A0A072N4W7	PhnA protein	NA
UHGV-0076769_9	eggNOG-mapper	78346.BRUM_0402	NA	NA
UHGV-0076769_9	Structural annotation	COG0789	NA	NA
UHGV-0076769_10	UniRef90	UniRef90_A0A412K9M9	Antitoxin	NA
UHGV-0076769_10	eggNOG-mapper	78346.BRUM_0403	NA	NA
UHGV-0076769_12	PHROG	phrog_3641	NA	unknown function
UHGV-0076769_12	eggNOG-mapper	398513.BBNG_00833	NA	NA
UHGV-0076769_14	UniRef90	UniRef90_A0A072MSY3	GTP-binding protein	NA
UHGV-0076769_15	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0076769_15	eggNOG-mapper	78346.BRUM_0405	NA	NA
UHGV-0076769_15	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0076769_16	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0076769_16	PHROG	phrog_16726	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076769_16	UniRef90	UniRef90_A0A174C1V7	Endonuclease	NA
UHGV-0076769_16	eggNOG-mapper	105422.BBPM01000058_gene4617	HNH endonuclease	NA
UHGV-0076769_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0076769_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0076769_18	eggNOG-mapper	1394176.AWUO01000011_gene389	NA	NA
UHGV-0076769_18	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0076769_20	UniRef90	UniRef90_A0A1X2ZKC5	Transposase	NA
UHGV-0076769_20	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0076769_20	Structural annotation	PF01815	NA	NA
UHGV-0076769_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0076769_21	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076769_21	UniRef90	UniRef90_A0A087D540	Putative endodeoxyribonuclease RusA family protein	NA
UHGV-0076769_21	eggNOG-mapper	78346.BRUM_0408	NA	NA
UHGV-0076769_21	Structural annotation	NF007305, COG4570	NA	NA
UHGV-0076769_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076769_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076769_22	UniRef90	UniRef90_A0A413KAY2	Single-stranded DNA-binding protein	NA
UHGV-0076769_22	eggNOG-mapper	78346.BRUM_0409	Single-strand binding protein family	NA
UHGV-0076769_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076769_22	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0076769_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076769_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076769_22	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0076769_24	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0076769_24	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0076769_24	UniRef90	UniRef90_A0A564S321	Protein RecT	NA
UHGV-0076769_24	eggNOG-mapper	1341695.BBOMB_1056	RecT family	NA
UHGV-0076769_24	Pfam	PF03837	RecT family	RecT
UHGV-0076769_24	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0076769_24	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0076769_24	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0076769_25	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076769_25	UniRef90	UniRef90_A0A072N4V5	Endonuclease	NA
UHGV-0076769_25	eggNOG-mapper	1437610.BREU_1416	YqaJ-like viral recombinase domain	NA
UHGV-0076769_25	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0076769_25	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0076769_25	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0076769_25	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0076769_27	UniRef90	UniRef90_UPI001F0F0E30	helix-turn-helix domain-containing protein	NA
UHGV-0076769_27	Structural annotation	PF01047	NA	NA
UHGV-0076769_28	UniRef90	UniRef90_A0A6B8LMI6	Hypoyhetical protein	NA
UHGV-0076769_29	UniRef90	UniRef90_A0A809K2X6	DNA-binding protein	NA
UHGV-0076769_29	eggNOG-mapper	445975.COLSTE_02332	Helix-turn-helix domain	NA
UHGV-0076769_29	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0076769_29	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0076769_29	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0076769_30	eggNOG-mapper	398513.BBNG_00824	NA	NA
UHGV-0076769_31	eggNOG-mapper	78346.BRUM_0417	NA	NA
UHGV-0076769_31	Structural annotation	PF12989	NA	NA
UHGV-0076769_32	Structural annotation	PF19824, NF009256	NA	NA
UHGV-0076769_35	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0076769_35	UniRef90	UniRef90_A0A174BZI9	The helix-turn-helix motif	NA
UHGV-0076769_35	eggNOG-mapper	78345.BMERY_0907	NA	NA
UHGV-0076769_35	Structural annotation	PF08667, MF_00535, NF041951, COG3093	NA	NA
UHGV-0076769_36	UniRef90	UniRef90_UPI001CFDF36A	anhydro-N-acetylmuramyl-tripeptide amidase	NA
UHGV-0076769_37	UniRef90	UniRef90_A0A3E5HJH1	XRE family transcriptional regulator	NA
UHGV-0076769_37	eggNOG-mapper	1435051.BMOU_0746	NA	NA
UHGV-0076769_37	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0076769_38	PHROG	phrog_87	metallo-protease	other
UHGV-0076769_38	UniRef90	UniRef90_UPI00118274D7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0076769_38	eggNOG-mapper	1435051.BMOU_0747	NA	NA
UHGV-0076769_38	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0076769_38	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0076769_39	UniRef90	UniRef90_A0A076JPS5	Cell surface protein	NA
UHGV-0076769_39	eggNOG-mapper	1680.BADO_1275	NA	NA
UHGV-0076769_40	UniRef90	UniRef90_A7A599	Outer membrane insertion signal domain protein	NA
UHGV-0076769_40	eggNOG-mapper	1435051.BMOU_0750	NA	NA
UHGV-0076769_41	KOfam	K14059	int; integrase	NA
UHGV-0076769_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0076769_41	UniRef90	UniRef90_A0A174BWN7	Phage integrase family protein	NA
UHGV-0076769_41	eggNOG-mapper	1435051.BMOU_0751	Phage integrase family	NA
UHGV-0076769_41	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0076769_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076769_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076769_41	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0076769_44	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA