UHGV-0076784

Genome information

Genome length 38,162 bps

CDS count 57

Completeness 97.70% (high-quality)

geNomad score 0.9567

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076784
vOTU ID	vOTU-071309
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_123514
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.70% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	32
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9567
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.22
Jumbo phage	No

Genome content
Genome length	38,162 bps
GC content	29.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	87.55%
Average CDS length	589.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076784_1	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0076784_1	UniRef90	UniRef90_UPI0018AB50F8	ORF6C domain-containing protein	NA
UHGV-0076784_1	eggNOG-mapper	318464.IO99_00440	ORF6N domain	NA
UHGV-0076784_1	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0076784_1	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0076784_1	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0076784_1	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0076784_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0076784_2	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0076784_2	UniRef90	UniRef90_UPI000DCFDA97	helix-turn-helix transcriptional regulator	NA
UHGV-0076784_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076784_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076784_2	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0076784_3	PHROG	phrog_22662	NA	unknown function
UHGV-0076784_8	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0076784_8	UniRef90	UniRef90_UPI001157AA47	ERF family protein	NA
UHGV-0076784_8	eggNOG-mapper	1415775.U729_2586	ERF superfamily	NA
UHGV-0076784_8	Pfam	PF04404	ERF superfamily	ERF
UHGV-0076784_8	Structural annotation	PF04404	NA	NA
UHGV-0076784_9	PHROG	phrog_674	NA	unknown function
UHGV-0076784_9	UniRef90	UniRef90_UPI001159171A	NA	NA
UHGV-0076784_9	eggNOG-mapper	1280689.AUJC01000003_gene937	NA	NA
UHGV-0076784_9	Pfam	PF07083	NA	DUF1351
UHGV-0076784_9	Structural annotation	PF07083	NA	NA
UHGV-0076784_10	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0076784_10	UniRef90	UniRef90_A0A1F1L7W3	DnaA_N domain-containing protein	NA
UHGV-0076784_10	eggNOG-mapper	195103.CPF_0940	Transcriptional regulator	NA
UHGV-0076784_10	Pfam	PF11638	DnaA N-terminal domain	DnaA_N
UHGV-0076784_10	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0076784_10	Structural annotation	PF09681, PF17214, MF_01819, TIGR01714, COG5529	NA	NA
UHGV-0076784_11	PHROG	phrog_17705	NA	unknown function
UHGV-0076784_11	Structural annotation	PF11195	NA	NA
UHGV-0076784_12	PHROG	phrog_3497	NA	unknown function
UHGV-0076784_12	UniRef90	UniRef90_UPI001EEE3B43	HNH endonuclease	NA
UHGV-0076784_12	eggNOG-mapper	1196322.A370_02067	NA	NA
UHGV-0076784_12	Structural annotation	COG5126	NA	NA
UHGV-0076784_13	PHROG	phrog_98	NA	unknown function
UHGV-0076784_13	UniRef90	UniRef90_UPI0008FB059C	YopX family protein	NA
UHGV-0076784_13	eggNOG-mapper	1499683.CCFF01000005_gene57	YopX protein	NA
UHGV-0076784_13	Pfam	PF09643	YopX protein	YopX
UHGV-0076784_13	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0076784_13	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0076784_14	PHROG	phrog_1389	NA	unknown function
UHGV-0076784_14	eggNOG-mapper	536233.CLO_1823	NA	NA
UHGV-0076784_14	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0076784_15	PHROG	phrog_20860	NA	unknown function
UHGV-0076784_16	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0076784_16	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0076784_16	UniRef90	UniRef90_UPI000DCFB386	DNA adenine methylase	NA
UHGV-0076784_16	eggNOG-mapper	272563.CD630_09350	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0076784_16	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0076784_16	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0076784_16	COG	COG0338	DNA-adenine methylase	NA
UHGV-0076784_16	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0076784_17	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076784_17	eggNOG-mapper	1280692.AUJL01000025_gene2095	NA	NA
UHGV-0076784_17	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0076784_18	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0076784_18	eggNOG-mapper	1196322.A370_02042	NA	NA
UHGV-0076784_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076784_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076784_19	UniRef90	UniRef90_UPI00115BA27E	single-stranded DNA-binding protein	NA
UHGV-0076784_19	eggNOG-mapper	457396.CSBG_03291	Single-stranded DNA-binding protein	NA
UHGV-0076784_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076784_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076784_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076784_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076784_19	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0076784_20	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0076784_20	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0076784_20	UniRef90	UniRef90_UPI000DD06519	site-specific DNA-methyltransferase	NA
UHGV-0076784_20	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0076784_20	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0076784_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0076784_20	COG	COG0863	DNA modification methylase	NA
UHGV-0076784_20	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0076784_21	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0076784_21	UniRef90	UniRef90_A0A844JSD9	MazG domain-containing protein	NA
UHGV-0076784_21	eggNOG-mapper	1499683.CCFF01000005_gene41	NA	NA
UHGV-0076784_23	UniRef90	UniRef90_UPI0018AA8F3E	RES family NAD+ phosphorylase	NA
UHGV-0076784_23	Pfam	PF08808	RES domain	RES
UHGV-0076784_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076784_24	UniRef90	UniRef90_UPI000C07C666	RNA polymerase subunit sigma-24	NA
UHGV-0076784_24	eggNOG-mapper	755731.Clo1100_1155	NA	NA
UHGV-0076784_24	Structural annotation	PF02996	NA	NA
UHGV-0076784_25	PHROG	phrog_1762	NA	unknown function
UHGV-0076784_25	UniRef90	UniRef90_UPI0018AB52A4	NA	NA
UHGV-0076784_25	eggNOG-mapper	1391646.AVSU01000063_gene3373	NA	NA
UHGV-0076784_25	Pfam	PF11185	NA	DUF2971
UHGV-0076784_25	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0076784_26	PHROG	phrog_15411	NA	unknown function
UHGV-0076784_26	UniRef90	UniRef90_UPI0018AA885D	NA	NA
UHGV-0076784_26	eggNOG-mapper	1499684.CCNP01000020_gene2275	NA	NA
UHGV-0076784_26	Pfam	PF13271	NA	DUF4062
UHGV-0076784_26	COG	COG2865	Predicted transcriptional regulator, contains HTH domain	NA
UHGV-0076784_26	Structural annotation	PF13271, PF14277, MF_00526, NF006747, NF006931, COG4271, COG3373	NA	NA
UHGV-0076784_27	UniRef90	UniRef90_A0A1T2PYK9	AbiTii domain-containing protein	NA
UHGV-0076784_27	eggNOG-mapper	553219.CAMSH0001_2016	NA	NA
UHGV-0076784_27	PADLOC	AbiTii	AbiTii	Abi
UHGV-0076784_27	Pfam	PF18864	AbiTii	AbiTii
UHGV-0076784_28	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0076784_28	UniRef90	UniRef90_UPI0018999C45	helix-turn-helix domain-containing protein	NA
UHGV-0076784_28	eggNOG-mapper	1280692.AUJL01000025_gene2085	transposase activity	NA
UHGV-0076784_28	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0076784_28	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0076784_28	Structural annotation	PF07141	NA	NA
UHGV-0076784_29	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0076784_29	UniRef90	UniRef90_UPI000C08AAB5	phage terminase large subunit	NA
UHGV-0076784_29	eggNOG-mapper	1280692.AUJL01000025_gene2084	TIGRFAM Phage	NA
UHGV-0076784_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0076784_29	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0076784_29	COG	COG5410	NA	NA
UHGV-0076784_29	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0076784_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0076784_30	UniRef90	UniRef90_UPI00115A1F99	phage portal protein	NA
UHGV-0076784_30	eggNOG-mapper	1280689.AUJC01000003_gene963	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0076784_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0076784_30	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0076784_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0076784_32	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0076784_32	UniRef90	UniRef90_UPI00115A002E	minor capsid protein	NA
UHGV-0076784_32	eggNOG-mapper	1499683.CCFF01000014_gene3913	Phage Mu protein F like protein	NA
UHGV-0076784_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0076784_32	Pfam	PF21814	NA	DUF6883
UHGV-0076784_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0076784_32	COG	COG2369	NA	NA
UHGV-0076784_32	Structural annotation	PF15542, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0076784_33	UniRef90	UniRef90_UPI0018A91483	NA	NA
UHGV-0076784_33	eggNOG-mapper	858215.Thexy_2345	NA	NA
UHGV-0076784_33	Structural annotation	PF02699, MF_00369, TIGR00739, COG5475	NA	NA
UHGV-0076784_34	PHROG	phrog_918	NA	unknown function
UHGV-0076784_34	UniRef90	UniRef90_UPI0005DA7338	NA	NA
UHGV-0076784_34	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-0076784_34	Pfam	PF19791	NA	DUF6275
UHGV-0076784_35	PHROG	phrog_918	NA	unknown function
UHGV-0076784_35	UniRef90	UniRef90_UPI00096A904F	NA	NA
UHGV-0076784_35	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-0076784_35	Pfam	PF19791	NA	DUF6275
UHGV-0076784_36	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0076784_36	UniRef90	UniRef90_UPI0011593FAC	NA	NA
UHGV-0076784_36	eggNOG-mapper	1280689.AUJC01000003_gene966	NA	NA
UHGV-0076784_36	Pfam	PF14265	NA	DUF4355
UHGV-0076784_36	Structural annotation	PF14265	NA	NA
UHGV-0076784_37	PHROG	phrog_283	major head protein	head and packaging
UHGV-0076784_37	UniRef90	UniRef90_A0A1I2NUB2	p22 coat protein-gene protein 5	NA
UHGV-0076784_37	eggNOG-mapper	1499683.CCFF01000014_gene3908	P22 coat protein - gene protein 5	NA
UHGV-0076784_37	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0076784_37	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0076784_38	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0076784_38	UniRef90	UniRef90_UPI001158F70C	phage head-tail connector protein	NA
UHGV-0076784_38	eggNOG-mapper	1280689.AUJC01000003_gene968	Phage gp6-like head-tail connector protein	NA
UHGV-0076784_38	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0076784_38	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0076784_39	PHROG	phrog_2168	NA	unknown function
UHGV-0076784_39	eggNOG-mapper	1280689.AUJC01000003_gene969	NA	NA
UHGV-0076784_39	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0076784_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0076784_40	UniRef90	UniRef90_UPI000C0763D6	HK97 gp10 family phage protein	NA
UHGV-0076784_40	eggNOG-mapper	1280689.AUJC01000003_gene970	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0076784_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0076784_40	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0076784_40	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0076784_41	PHROG	phrog_78	tail terminator	connector
UHGV-0076784_41	eggNOG-mapper	1499683.CCFF01000014_gene3904	NA	NA
UHGV-0076784_41	Structural annotation	PF05657	NA	NA
UHGV-0076784_42	PHROG	phrog_158	major tail protein	tail
UHGV-0076784_42	UniRef90	UniRef90_UPI001158F5FB	phage tail protein	NA
UHGV-0076784_42	eggNOG-mapper	1499683.CCFF01000014_gene3903	Phage tail tube protein, TTP	NA
UHGV-0076784_42	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0076784_42	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0076784_43	PHROG	phrog_2546	NA	unknown function
UHGV-0076784_43	UniRef90	UniRef90_UPI000C085E8D	TM2 domain-containing protein	NA
UHGV-0076784_43	eggNOG-mapper	1280689.AUJC01000003_gene973	NA	NA
UHGV-0076784_43	Pfam	PF05154	TM2 domain	TM2
UHGV-0076784_43	Structural annotation	PF05154, PF02701, COG3478, COG2314	NA	NA
UHGV-0076784_44	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0076784_44	UniRef90	UniRef90_UPI0006C0E497	NA	NA
UHGV-0076784_44	eggNOG-mapper	1280689.AUJC01000003_gene974	NA	NA
UHGV-0076784_44	Pfam	PF19591	NA	DUF6096
UHGV-0076784_44	Structural annotation	PF19591	NA	NA
UHGV-0076784_45	PHROG	phrog_2066	NA	unknown function
UHGV-0076784_45	eggNOG-mapper	1280689.AUJC01000003_gene975	NA	NA
UHGV-0076784_46	PHROG	phrog_31409	tail length tape measure protein	tail
UHGV-0076784_46	UniRef90	UniRef90_A0A383RGU3	Putative phage protein	NA
UHGV-0076784_46	eggNOG-mapper	1280689.AUJC01000003_gene976	phage tail tape measure protein	NA
UHGV-0076784_46	COG	COG5283	Phage-related tail protein	NA
UHGV-0076784_46	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0076784_47	PHROG	phrog_1194	NA	unknown function
UHGV-0076784_47	eggNOG-mapper	1499683.CCFF01000014_gene3899	NA	NA
UHGV-0076784_47	Pfam	PF20458	NA	DUF6711
UHGV-0076784_47	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0076784_48	PHROG	phrog_1401	NA	unknown function
UHGV-0076784_48	UniRef90	UniRef90_UPI0018ABCBD1	NA	NA
UHGV-0076784_48	eggNOG-mapper	1262449.CP6013_3212	NA	NA
UHGV-0076784_48	Structural annotation	PF07761	NA	NA
UHGV-0076784_49	PHROG	phrog_16267	NA	unknown function
UHGV-0076784_49	UniRef90	UniRef90_UPI001C1E1ED3	phage tail protein	NA
UHGV-0076784_49	eggNOG-mapper	457396.CSBG_01060	Phage minor structural protein	NA
UHGV-0076784_49	COG	COG4926	Phage-related protein	NA
UHGV-0076784_49	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0076784_50	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-0076784_50	UniRef90	UniRef90_UPI000BE2C14C	BhlA/UviB family holin-like peptide	NA
UHGV-0076784_50	eggNOG-mapper	1415774.U728_1063	BhlA holin family	NA
UHGV-0076784_50	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-0076784_51	PHROG	phrog_20258	NA	unknown function
UHGV-0076784_51	eggNOG-mapper	1280689.AUJC01000011_gene1537	NA	NA
UHGV-0076784_52	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0076784_52	PHROG	phrog_12727	endolysin	lysis
UHGV-0076784_52	UniRef90	UniRef90_UPI00115BF697	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076784_52	eggNOG-mapper	1540257.JQMW01000009_gene2672	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076784_52	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0076784_52	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076784_52	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0076784_53	PHROG	phrog_2277	NA	unknown function
UHGV-0076784_53	UniRef90	UniRef90_C4IFG6	Conserved domain protein	NA
UHGV-0076784_53	eggNOG-mapper	632245.CLP_1670	NA	NA
UHGV-0076784_54	UniRef90	UniRef90_UPI00115B56BE	helix-turn-helix domain-containing protein	NA
UHGV-0076784_54	eggNOG-mapper	1211817.CCAT010000003_gene264	Helix-turn-helix domain	NA
UHGV-0076784_54	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0076784_54	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0076784_55	UniRef90	UniRef90_UPI000DD0DDC7	NA	NA
UHGV-0076784_55	eggNOG-mapper	1415775.U729_1741	NA	NA
UHGV-0076784_55	Pfam	PF07485	NA	DUF1529
UHGV-0076784_55	COG	COG1388	LysM repeat	NA
UHGV-0076784_56	eggNOG-mapper	457396.CSBG_02426	NA	NA
UHGV-0076784_57	PHROG	phrog_20258	NA	unknown function
UHGV-0076784_57	eggNOG-mapper	457396.CSBG_02425	NA	NA