UHGV-0076813

Genome information

Genome length 42,198 bps

CDS count 67

Completeness 78.64% (medium-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076813
vOTU ID	vOTU-026588
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_136848
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.04
Jumbo phage	No

Genome content
Genome length	42,198 bps
GC content	37.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	95.46%
Average CDS length	604.03 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076813_1	KOfam	K14059	int; integrase	NA
UHGV-0076813_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0076813_1	UniRef90	UniRef90_R6MY37	Putative integrase	NA
UHGV-0076813_1	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0076813_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0076813_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076813_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076813_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0076813_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0076813_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0076813_5	UniRef90	UniRef90_UPI0016485B88	XRE family transcriptional regulator	NA
UHGV-0076813_5	eggNOG-mapper	411483.FAEPRAA2165_00756	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0076813_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076813_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0076813_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0076813_5	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0076813_6	UniRef90	UniRef90_UPI00164CCC30	NA	NA
UHGV-0076813_6	eggNOG-mapper	1262914.BN533_00808	NA	NA
UHGV-0076813_6	Pfam	PF05339	NA	DUF739
UHGV-0076813_6	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0076813_6	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0076813_9	PHROG	phrog_3150	NA	unknown function
UHGV-0076813_9	eggNOG-mapper	580331.Thit_1411	NA	NA
UHGV-0076813_12	PHROG	phrog_5070	NA	unknown function
UHGV-0076813_12	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0076813_12	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0076813_12	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0076813_12	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0076813_12	Structural annotation	MF_01691, NF040481	NA	NA
UHGV-0076813_15	Structural annotation	PF10922	NA	NA
UHGV-0076813_16	PHROG	phrog_28990	NA	unknown function
UHGV-0076813_17	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0076813_17	UniRef90	UniRef90_R6MCS5	Siphovirus family protein	NA
UHGV-0076813_17	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0076813_17	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0076813_17	Structural annotation	PF05565	NA	NA
UHGV-0076813_18	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076813_18	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0076813_18	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0076813_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0076813_19	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0076813_19	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0076813_19	Structural annotation	PF05772	NA	NA
UHGV-0076813_20	PHROG	phrog_7566	NA	unknown function
UHGV-0076813_20	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0076813_20	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0076813_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076813_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076813_22	UniRef90	UniRef90_R6M3F2	Single-stranded DNA-binding protein	NA
UHGV-0076813_22	eggNOG-mapper	1291050.JAGE01000001_gene1719	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0076813_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076813_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076813_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076813_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076813_22	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0076813_23	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0076813_23	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0076813_23	UniRef90	UniRef90_A0A2R4N3E8	Replicative DNA helicase loader DnaB	NA
UHGV-0076813_23	eggNOG-mapper	762984.HMPREF9445_00153	DnaD domain protein	NA
UHGV-0076813_23	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0076813_23	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0076813_23	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0076813_23	Structural annotation	PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0076813_24	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076813_24	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0076813_24	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0076813_25	PHROG	phrog_4400	NA	unknown function
UHGV-0076813_25	eggNOG-mapper	357809.Cphy_2990	NA	NA
UHGV-0076813_26	PHROG	phrog_4400	NA	unknown function
UHGV-0076813_26	eggNOG-mapper	357809.Cphy_2990	NA	NA
UHGV-0076813_26	dbAPIS	APIS056	NA	NA
UHGV-0076813_27	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0076813_27	PHROG	phrog_37855	NA	unknown function
UHGV-0076813_27	UniRef90	UniRef90_A0A645DV58	Stage 0 sporulation protein A	NA
UHGV-0076813_27	eggNOG-mapper	642492.Clole_1756	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0076813_27	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0076813_27	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0076813_27	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0076813_31	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0076813_31	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0076813_31	UniRef90	UniRef90_A0A1C5STJ7	MazG domain-containing protein	NA
UHGV-0076813_31	eggNOG-mapper	220341.16503116	Toxic component of a type I toxin-antitoxin (TA) system. Upon overexpression inhibits growth and reduces colony-forming units in both the presence and absence of the Rac prophage, cells become filamentous. Has deoxyribonuclease activity (probably endonucleolytic), does not digest RNA. Its toxic effects are neutralized by sRNA antitoxin RalA, which is encoded in trans on the opposite DNA strand. Has RAL-like activity	NA
UHGV-0076813_31	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0076813_31	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0076813_31	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0076813_31	Structural annotation	PF14354, COG3478	NA	NA
UHGV-0076813_32	PHROG	phrog_419	NA	unknown function
UHGV-0076813_32	UniRef90	UniRef90_UPI001CC11C4F	PGDYG domain-containing protein	NA
UHGV-0076813_32	eggNOG-mapper	1134413.ANNK01000120_gene2032	NA	NA
UHGV-0076813_32	Structural annotation	PF14083	NA	NA
UHGV-0076813_33	PHROG	phrog_6802	NA	unknown function
UHGV-0076813_33	eggNOG-mapper	1256908.HMPREF0373_03028	NA	NA
UHGV-0076813_34	KOfam	K03040	rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]	NA
UHGV-0076813_34	UniRef90	UniRef90_A0A416CVN3	RNA_pol_A_CTD domain-containing protein	NA
UHGV-0076813_34	eggNOG-mapper	1410638.JHXJ01000004_gene2091	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-0076813_34	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0076813_34	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-0076813_36	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0076813_36	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0076813_36	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0076813_38	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0076813_41	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0076813_41	eggNOG-mapper	1095750.HMPREF9970_2261	NA	NA
UHGV-0076813_41	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0076813_44	Structural annotation	PF06056, COG2963	NA	NA
UHGV-0076813_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076813_45	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0076813_45	UniRef90	UniRef90_A0A355JD48	Terminase_3 domain-containing protein	NA
UHGV-0076813_45	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-0076813_45	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0076813_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076813_45	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0076813_46	UniRef90	UniRef90_A0A7X6VKT0	C2H2-type domain-containing protein	NA
UHGV-0076813_46	Structural annotation	PF21169	NA	NA
UHGV-0076813_48	PHROG	phrog_156	portal protein	head and packaging
UHGV-0076813_48	eggNOG-mapper	588581.Cpap_1526	NA	NA
UHGV-0076813_48	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0076813_50	PHROG	phrog_14242	major head protein	head and packaging
UHGV-0076813_50	UniRef90	UniRef90_A0A355JD53	Phage major capsid protein	NA
UHGV-0076813_50	eggNOG-mapper	588581.Cpap_1528	NA	NA
UHGV-0076813_50	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0076813_50	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0076813_52	Structural annotation	PF20387	NA	NA
UHGV-0076813_53	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0076813_53	eggNOG-mapper	1449126.JQKL01000002_gene1688	NA	NA
UHGV-0076813_56	Structural annotation	PF09144, NF038393	NA	NA
UHGV-0076813_58	UniRef90	UniRef90_R6MQV2	Tail Collar domain protein	NA
UHGV-0076813_58	Structural annotation	PF01696, NF000420, COG3420	NA	NA
UHGV-0076813_60	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0076813_60	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0076813_61	KOfam	K24248	EMID1; EMI domain-containing protein 1	NA
UHGV-0076813_61	PHROG	phrog_366	tail fiber protein	tail
UHGV-0076813_61	eggNOG-mapper	1536769.P40081_01140	NA	NA
UHGV-0076813_61	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0076813_62	PHROG	phrog_37799	NA	unknown function
UHGV-0076813_62	UniRef90	UniRef90_R6NA79	Toxin secretion/phage lysis holin	NA
UHGV-0076813_62	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0076813_62	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0076813_62	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0076813_62	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0076813_62	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0076813_63	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0076813_64	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0076813_64	PHROG	phrog_435	endolysin	lysis
UHGV-0076813_64	UniRef90	UniRef90_A0A1C5N460	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076813_64	eggNOG-mapper	272563.CD630_09720	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076813_64	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0076813_64	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076813_64	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0076813_65	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0076813_65	PHROG	phrog_329	minor tail protein	tail
UHGV-0076813_65	UniRef90	UniRef90_A0A355JE00	Peptidase C51 domain-containing protein	NA
UHGV-0076813_65	eggNOG-mapper	748727.CLJU_c01500	NLP P60 protein	NA
UHGV-0076813_65	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0076813_65	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0076813_65	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA