UHGV-0076847

Genome information

Genome length 37,024 bps

CDS count 56

Completeness 92.67% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076847
vOTU ID	vOTU-062398
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_110759
BioSample	SAMEA2580092
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.67% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.58
Jumbo phage	No

Genome content
Genome length	37,024 bps
GC content	53.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	89.67%
Average CDS length	595.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076847_1	PHROG	phrog_372	tail protein	tail
UHGV-0076847_1	UniRef90	UniRef90_A0A1C5RHT6	Phage-related holin (Lysis protein)	NA
UHGV-0076847_1	eggNOG-mapper	658655.HMPREF0988_00525	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0076847_1	Pfam	PF05895	NA	DUF859
UHGV-0076847_1	COG	COG4675	Phage tail collar domain	NA
UHGV-0076847_1	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0076847_2	PHROG	phrog_3558	tail protein	tail
UHGV-0076847_2	UniRef90	UniRef90_A0A847D2L1	Prophage_tail domain-containing protein	NA
UHGV-0076847_2	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-0076847_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0076847_2	COG	COG4926	Phage-related protein	NA
UHGV-0076847_2	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0076847_3	UniRef90	UniRef90_A0A374UNT1	MtfA protein	NA
UHGV-0076847_3	eggNOG-mapper	411465.PEPMIC_00745	NA	NA
UHGV-0076847_3	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0076847_4	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0076847_4	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0076847_4	COG	COG1511	NA	NA
UHGV-0076847_4	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0076847_5	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0076847_6	PHROG	phrog_885	major tail protein	tail
UHGV-0076847_6	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0076847_9	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0076847_9	eggNOG-mapper	445971.ANASTE_01016	NA	NA
UHGV-0076847_9	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0076847_9	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0076847_10	PHROG	phrog_6244	NA	unknown function
UHGV-0076847_10	eggNOG-mapper	1408437.JNJN01000010_gene1241	NA	NA
UHGV-0076847_11	PHROG	phrog_13890	NA	unknown function
UHGV-0076847_11	UniRef90	UniRef90_A0A417NGM5	Arc family DNA-binding protein	NA
UHGV-0076847_11	eggNOG-mapper	742738.HMPREF9460_00716	NA	NA
UHGV-0076847_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0076847_12	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0076847_12	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0076847_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0076847_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0076847_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0076847_13	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0076847_13	UniRef90	UniRef90_A0A4U7JDN1	Phage tail tape measure protein	NA
UHGV-0076847_13	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0076847_13	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0076847_13	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0076847_18	eggNOG-mapper	397291.C804_01613	NA	NA
UHGV-0076847_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076847_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0076847_19	UniRef90	UniRef90_R9JJE2	PBSX family phage terminase, large subunit	NA
UHGV-0076847_19	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0076847_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0076847_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0076847_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076847_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076847_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0076847_20	UniRef90	UniRef90_A0A412AWV1	Helix-turn-helix domain-containing protein	NA
UHGV-0076847_20	eggNOG-mapper	439235.Dalk_5237	NA	NA
UHGV-0076847_21	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076847_21	eggNOG-mapper	742738.HMPREF9460_00725	NA	NA
UHGV-0076847_21	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0076847_22	eggNOG-mapper	97138.C820_00806	Bacteriophage replication protein O	NA
UHGV-0076847_23	UniRef90	UniRef90_A0A316NB47	NA	NA
UHGV-0076847_23	Pfam	PF19808	NA	DUF6291
UHGV-0076847_23	Structural annotation	PF19808	NA	NA
UHGV-0076847_25	PHROG	phrog_2113	NA	unknown function
UHGV-0076847_25	eggNOG-mapper	1160721.RBI_II00485	NA	NA
UHGV-0076847_25	Structural annotation	PF08279, TIGR00122, COG1654	NA	NA
UHGV-0076847_26	UniRef90	UniRef90_UPI001C0FBBD0	DNA-binding protein	NA
UHGV-0076847_26	eggNOG-mapper	755731.Clo1100_1615	TIGRFAM DNA binding domain, excisionase family	NA
UHGV-0076847_26	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0076847_27	KOfam	K14059	int; integrase	NA
UHGV-0076847_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0076847_27	UniRef90	UniRef90_UPI001898152E	site-specific integrase	NA
UHGV-0076847_27	eggNOG-mapper	877411.JMMA01000002_gene2540	Belongs to the 'phage' integrase family	NA
UHGV-0076847_27	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0076847_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076847_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076847_27	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0076847_28	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0076847_29	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0076847_29	Structural annotation	PF11367	NA	NA
UHGV-0076847_30	PHROG	phrog_17977	NA	unknown function
UHGV-0076847_30	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0076847_30	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0076847_32	PHROG	phrog_544	major head protein	head and packaging
UHGV-0076847_32	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0076847_32	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0076847_32	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0076847_33	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0076847_33	Structural annotation	PF06810	NA	NA
UHGV-0076847_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0076847_34	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0076847_34	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0076847_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0076847_34	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0076847_35	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0076847_35	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0076847_35	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0076847_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0076847_35	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0076847_35	COG	COG2369	NA	NA
UHGV-0076847_35	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0076847_36	PHROG	phrog_28328	NA	unknown function
UHGV-0076847_36	eggNOG-mapper	428125.CLOLEP_01381	NA	NA
UHGV-0076847_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-0076847_37	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0076847_37	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0076847_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0076847_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0076847_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076847_38	PHROG	phrog_10250	NA	unknown function
UHGV-0076847_38	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0076847_38	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0076847_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0076847_38	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0076847_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076847_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076847_38	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0076847_41	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0076847_41	PHROG	phrog_21498	NA	unknown function
UHGV-0076847_41	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0076847_41	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0076847_41	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0076847_41	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0076847_41	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0076847_41	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0076847_42	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0076847_42	Structural annotation	TIGR01636	NA	NA
UHGV-0076847_45	PHROG	phrog_18716	NA	unknown function
UHGV-0076847_45	UniRef90	UniRef90_R6RP50	NA	NA
UHGV-0076847_45	eggNOG-mapper	575540.Isop_2447	NA	NA
UHGV-0076847_45	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0076847_45	Structural annotation	PF18909	NA	NA
UHGV-0076847_47	PHROG	phrog_38832	NA	unknown function
UHGV-0076847_47	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-0076847_47	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0076847_48	PHROG	phrog_22529	NA	unknown function
UHGV-0076847_48	UniRef90	UniRef90_A0A810Q1V0	3D domain-containing protein	NA
UHGV-0076847_48	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0076847_48	Pfam	PF06725	3D domain	3D
UHGV-0076847_48	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0076847_48	Structural annotation	PF06725, NF040670, COG3584	NA	NA
UHGV-0076847_51	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0076847_51	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076847_51	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0076847_51	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0076847_51	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0076847_51	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0076847_51	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0076847_52	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0076847_52	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0076847_52	UniRef90	UniRef90_A0A6N9P2F5	Class V aminotransferase	NA
UHGV-0076847_52	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0076847_52	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0076847_52	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0076847_52	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0076847_53	Structural annotation	TIGR00122, COG1654	NA	NA
UHGV-0076847_54	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0076847_54	UniRef90	UniRef90_A0A1L5KS67	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0076847_54	eggNOG-mapper	411468.CLOSCI_00567	DNA N-6-adenine-methyltransferase	NA
UHGV-0076847_54	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0076847_54	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0076847_54	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0076847_55	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0076847_55	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0076847_55	UniRef90	UniRef90_A0A6N9PX21	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0076847_55	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0076847_55	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0076847_55	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0076847_55	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0076847_56	eggNOG-mapper	657322.FPR_23130	NA	NA