UHGV-0076848

Genome information

Genome length 35,385 bps

CDS count 64

Completeness 99.11% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076848
vOTU ID	vOTU-062397
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_110760
BioSample	SAMEA2580092
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.11% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.46
Jumbo phage	No

Genome content
Genome length	35,385 bps
GC content	43.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.30%
Average CDS length	504.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076848_2	UniRef90	UniRef90_F5RJP5	Chaperonin	NA
UHGV-0076848_2	eggNOG-mapper	1200557.JHWV01000022_gene2459	NA	NA
UHGV-0076848_2	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-0076848_3	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0076848_3	UniRef90	UniRef90_A0A412AXN9	Phage_Mu_F domain-containing protein	NA
UHGV-0076848_3	eggNOG-mapper	1235792.C808_05333	Phage Mu protein F like protein	NA
UHGV-0076848_3	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0076848_3	Pfam	PF21814	NA	DUF6883
UHGV-0076848_3	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0076848_3	COG	COG2369	NA	NA
UHGV-0076848_3	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0076848_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-0076848_4	UniRef90	UniRef90_A0A412AXG4	Phage portal protein	NA
UHGV-0076848_4	eggNOG-mapper	1235792.C808_05332	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0076848_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0076848_4	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0076848_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0076848_5	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0076848_5	UniRef90	UniRef90_UPI00046F67CE	terminase family protein	NA
UHGV-0076848_5	eggNOG-mapper	1232453.BAIF02000011_gene3352	NA	NA
UHGV-0076848_5	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0076848_6	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0076848_6	PHROG	phrog_1595	terminase small subunit	head and packaging
UHGV-0076848_6	UniRef90	UniRef90_A0A412AXK9	Terminase	NA
UHGV-0076848_6	eggNOG-mapper	1158602.I590_02986	DNA packaging	NA
UHGV-0076848_6	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0076848_6	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0076848_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076848_7	UniRef90	UniRef90_UPI001BA7148F	RNA polymerase subunit sigma-24	NA
UHGV-0076848_7	eggNOG-mapper	1235800.C819_00496	NA	NA
UHGV-0076848_7	Structural annotation	PF02996	NA	NA
UHGV-0076848_10	PHROG	phrog_25732	NA	unknown function
UHGV-0076848_12	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0076848_12	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0076848_16	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0076848_16	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0076848_16	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0076848_16	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0076848_17	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0076848_17	UniRef90	UniRef90_A0A6M3L5L0	Putative methyltransferase	NA
UHGV-0076848_17	eggNOG-mapper	1226322.HMPREF1545_03521	C-5 cytosine-specific DNA methylase	NA
UHGV-0076848_17	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0076848_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0076848_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076848_20	UniRef90	UniRef90_A0A1C6HG31	Holliday junction resolvase	NA
UHGV-0076848_20	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0076848_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0076848_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0076848_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0076848_21	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0076848_21	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0076848_21	UniRef90	UniRef90_A0A6N8HZR2	DNA helicase	NA
UHGV-0076848_21	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0076848_21	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0076848_21	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0076848_21	COG	COG0305	Replicative DNA helicase	NA
UHGV-0076848_21	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0076848_22	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0076848_22	UniRef90	UniRef90_A0A1V4IJQ1	DnaB_2 domain-containing protein	NA
UHGV-0076848_22	eggNOG-mapper	762550.LEGAS_1609	DnaD domain protein	NA
UHGV-0076848_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0076848_22	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0076848_23	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0076848_24	PHROG	phrog_862	NA	unknown function
UHGV-0076848_24	eggNOG-mapper	1203606.HMPREF1526_00310	NA	NA
UHGV-0076848_24	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0076848_32	PHROG	phrog_4392	NA	unknown function
UHGV-0076848_32	UniRef90	UniRef90_UPI000E489044	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0076848_34	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0076848_34	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076848_34	UniRef90	UniRef90_A0A412AWF5	Helix-turn-helix domain-containing protein	NA
UHGV-0076848_34	eggNOG-mapper	1519439.JPJG01000077_gene919	Helix-turn-helix domain	NA
UHGV-0076848_34	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0076848_34	Structural annotation	PF04218	NA	NA
UHGV-0076848_35	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0076848_35	PHROG	phrog_4646	transposase	integration and excision
UHGV-0076848_35	UniRef90	UniRef90_R6N1U4	Integrase catalytic domain-containing protein	NA
UHGV-0076848_35	eggNOG-mapper	411459.RUMOBE_01705	COG COG2826 Transposase and inactivated derivatives, IS30 family	NA
UHGV-0076848_35	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0076848_35	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-0076848_35	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-0076848_35	Structural annotation	PF03400, PF13384, NF033563, COG2826	NA	NA
UHGV-0076848_36	UniRef90	UniRef90_R6NCF0	RHH_1 domain-containing protein	NA
UHGV-0076848_36	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0076848_36	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0076848_37	AcrCatalog	cluster_160566	NA	NA
UHGV-0076848_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0076848_40	PHROG	phrog_7396	NA	unknown function
UHGV-0076848_40	UniRef90	UniRef90_R6P7W0	Helix-turn-helix domain-containing protein	NA
UHGV-0076848_40	eggNOG-mapper	1235797.C816_02851	Helix-turn-helix XRE-family like proteins	NA
UHGV-0076848_40	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0076848_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076848_40	Structural annotation	PF13560, NF041951, COG1813	NA	NA
UHGV-0076848_41	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0076848_41	PHROG	phrog_10292	NA	unknown function
UHGV-0076848_41	UniRef90	UniRef90_R6NCF6	TM2 domain-containing protein	NA
UHGV-0076848_41	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-0076848_41	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0076848_41	Pfam	PF05154	TM2 domain	TM2
UHGV-0076848_41	COG	COG2314	NA	NA
UHGV-0076848_43	eggNOG-mapper	428125.CLOLEP_01836	COG NOG08824 non supervised orthologous group	NA
UHGV-0076848_44	eggNOG-mapper	428125.CLOLEP_01837	Belongs to the 'phage' integrase family	NA
UHGV-0076848_44	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0076848_46	PHROG	phrog_297	holin	lysis
UHGV-0076848_46	UniRef90	UniRef90_A7VT88	Holin, phage phi LC3 family	NA
UHGV-0076848_46	eggNOG-mapper	428125.CLOLEP_00169	COG COG5546 Small integral membrane protein	NA
UHGV-0076848_46	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0076848_46	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0076848_46	COG	COG5546	NA	NA
UHGV-0076848_46	Structural annotation	COG5546	NA	NA
UHGV-0076848_47	PHROG	phrog_1863	NA	unknown function
UHGV-0076848_47	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0076848_47	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-0076848_48	KOfam	K07273	acm; lysozyme	NA
UHGV-0076848_48	PHROG	phrog_291	endolysin	lysis
UHGV-0076848_48	UniRef90	UniRef90_A0A1C5NS63	Autolytic lysozyme	NA
UHGV-0076848_48	eggNOG-mapper	428125.CLOLEP_00561	Glycosyl hydrolases family 25	NA
UHGV-0076848_48	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0076848_48	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0076848_48	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-0076848_49	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0076848_49	UniRef90	UniRef90_A7VT91	Peptidase S74 domain-containing protein	NA
UHGV-0076848_49	eggNOG-mapper	428125.CLOLEP_00172	COG COG5295 Autotransporter adhesin	NA
UHGV-0076848_49	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0076848_49	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0076848_49	Structural annotation	PF10651	NA	NA
UHGV-0076848_50	PHROG	phrog_13289	tail protein	tail
UHGV-0076848_50	UniRef90	UniRef90_A0A412AXS9	Peptidase S74 domain-containing protein	NA
UHGV-0076848_50	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0076848_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0076848_50	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0076848_50	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0076848_50	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0076848_51	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0076848_51	UniRef90	UniRef90_A0A412AXU0	Phage tail protein	NA
UHGV-0076848_51	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0076848_51	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0076848_51	COG	COG4722	Phage-related protein YomH	NA
UHGV-0076848_51	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0076848_52	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0076848_52	UniRef90	UniRef90_UPI000E491C35	tape measure protein	NA
UHGV-0076848_52	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0076848_52	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0076848_52	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0076848_52	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0076848_52	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0076848_52	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0076848_53	PHROG	phrog_7423	NA	unknown function
UHGV-0076848_53	UniRef90	UniRef90_UPI001BB3399C	phenylalanine racemase	NA
UHGV-0076848_53	eggNOG-mapper	1235792.C808_05347	NA	NA
UHGV-0076848_54	PHROG	phrog_2115	tail protein	tail
UHGV-0076848_54	UniRef90	UniRef90_R5KJ84	BH3520 protein	NA
UHGV-0076848_54	eggNOG-mapper	1235792.C808_05346	NA	NA
UHGV-0076848_54	Structural annotation	PF11836	NA	NA
UHGV-0076848_55	PHROG	phrog_1407	major tail protein	tail
UHGV-0076848_55	UniRef90	UniRef90_A0A412AXG9	Phage major tail protein, TP901-1 family	NA
UHGV-0076848_55	eggNOG-mapper	1235792.C808_05345	Phage tail tube protein	NA
UHGV-0076848_55	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0076848_55	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0076848_55	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0076848_55	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0076848_55	Structural annotation	PF06199, PF18316, TIGR02126, COG5437	NA	NA
UHGV-0076848_56	PHROG	phrog_176	tail terminator	connector
UHGV-0076848_56	UniRef90	UniRef90_A0A412AXH4	NA	NA
UHGV-0076848_56	eggNOG-mapper	1235792.C808_05344	NA	NA
UHGV-0076848_56	Pfam	PF16807	NA	DUF5072
UHGV-0076848_56	Structural annotation	PF16807, COG5003	NA	NA
UHGV-0076848_57	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0076848_57	UniRef90	UniRef90_A0A412AXL7	HK97 gp10 family phage protein	NA
UHGV-0076848_57	eggNOG-mapper	742722.HMPREF9463_00249	NA	NA
UHGV-0076848_57	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0076848_58	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0076848_59	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0076848_59	UniRef90	UniRef90_UPI00110715F1	phage head-tail connector protein	NA
UHGV-0076848_59	eggNOG-mapper	1235792.C808_05341	NA	NA
UHGV-0076848_59	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0076848_59	Structural annotation	PF05135	NA	NA
UHGV-0076848_60	PHROG	phrog_544	major head protein	head and packaging
UHGV-0076848_60	UniRef90	UniRef90_A0A2V2CVM8	S-l_SbsC_C domain-containing protein	NA
UHGV-0076848_60	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0076848_60	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0076848_60	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0076848_61	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0076848_61	UniRef90	UniRef90_A0A412AXT0	NA	NA
UHGV-0076848_61	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-0076848_61	Pfam	PF14265	NA	DUF4355
UHGV-0076848_61	Structural annotation	PF14265	NA	NA
UHGV-0076848_62	KOfam	K07584	NA	NA
UHGV-0076848_62	PHROG	phrog_4478	peptidase	other
UHGV-0076848_62	UniRef90	UniRef90_A0A412AXD6	Ribosomal-processing cysteine protease Prp	NA
UHGV-0076848_62	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0076848_62	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0076848_62	COG	COG2868	NA	NA
UHGV-0076848_62	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0076848_64	KOfam	K03671	trxA; thioredoxin 1	NA
UHGV-0076848_64	UniRef90	UniRef90_A0A412AXE3	Thioredoxin	NA
UHGV-0076848_64	eggNOG-mapper	1123252.ATZF01000010_gene369	Thioredoxin	NA
UHGV-0076848_64	Pfam	PF00085	Thioredoxin	Thioredoxin
UHGV-0076848_64	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0076848_64	Structural annotation	PF00085, MF_01835, TIGR01068, COG0526	NA	NA