UHGV-0076885

Genome information

Genome length 15,117 bps

CDS count 15

Completeness 50.88% (medium-quality)

geNomad score 0.9659

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076885
vOTU ID	vOTU-018188
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_119234
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	50.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9659
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.48
Jumbo phage	No

Genome content
Genome length	15,117 bps
GC content	45.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	15
CDS density	94.52%
Average CDS length	959.60 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076885_1	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0076885_1	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0076885_1	UniRef90	UniRef90_A0A843HRU5	DNA-directed DNA polymerase	NA
UHGV-0076885_1	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0076885_1	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0076885_5	Structural annotation	PF08931	NA	NA
UHGV-0076885_8	PHROG	phrog_2038	upper collar connector	connector
UHGV-0076885_8	UniRef90	UniRef90_I3PV47	Connector protein	NA
UHGV-0076885_8	eggNOG-mapper	1309583.M4W5Z5_9CAUD	Phage Connector (GP10)	NA
UHGV-0076885_8	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0076885_9	PHROG	phrog_2248	tail protein	tail
UHGV-0076885_9	UniRef90	UniRef90_A0A843GZQ7	Caud_tail_N domain-containing protein	NA
UHGV-0076885_9	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-0076885_9	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0076885_9	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0076885_9	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0076885_10	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0076885_10	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0076885_10	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0076885_10	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0076885_12	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0076885_12	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0076885_12	UniRef90	UniRef90_A0A348SZW4	Peptidase_M23 domain-containing protein	NA
UHGV-0076885_12	eggNOG-mapper	743718.Isova_1011	Peptidase family M23	NA
UHGV-0076885_12	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0076885_12	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0076885_12	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0076885_13	PHROG	phrog_199	holin	lysis
UHGV-0076885_13	UniRef90	UniRef90_A0A843HL15	Phage holin family protein	NA
UHGV-0076885_13	eggNOG-mapper	877414.ATWA01000062_gene1614	Bacteriophage holin family	NA
UHGV-0076885_13	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0076885_13	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0076885_13	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0076885_15	PHROG	phrog_2150	terminase	head and packaging
UHGV-0076885_15	UniRef90	UniRef90_A0A843GV47	Phage DNA encapsidation protein	NA
UHGV-0076885_15	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0076885_15	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0076885_15	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA