UHGV-0076941

Genome information

Genome length 36,462 bps

CDS count 46

Completeness 79.40% (medium-quality)

geNomad score 0.9725

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076941
vOTU ID	vOTU-041535
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_137108
BioSample	SAMEA2737767
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9725
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	78.7
Jumbo phage	No

Genome content
Genome length	36,462 bps
GC content	33.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.70%
Average CDS length	729.98 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076941_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0076941_1	PHROG	phrog_9611	endolysin	lysis
UHGV-0076941_1	UniRef90	UniRef90_A0A5B9YKS2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0076941_1	eggNOG-mapper	742733.HMPREF9469_01796	Ami_2	NA
UHGV-0076941_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0076941_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0076941_1	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0076941_2	PHROG	phrog_199	holin	lysis
UHGV-0076941_2	UniRef90	UniRef90_A0A174N8Q9	Phage-related holin (Lysis protein)	NA
UHGV-0076941_2	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0076941_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0076941_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0076941_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0076941_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0076941_5	KOfam	K17256	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	NA
UHGV-0076941_5	PHROG	phrog_35892	NA	unknown function
UHGV-0076941_5	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0076941_5	Pfam	PF13855	Leucine rich repeat	LRR_8
UHGV-0076941_5	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0076941_5	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0076941_6	PHROG	phrog_19695	NA	unknown function
UHGV-0076941_6	Structural annotation	PF10651	NA	NA
UHGV-0076941_7	PHROG	phrog_521	tail protein	tail
UHGV-0076941_7	UniRef90	UniRef90_A0A858BX30	YmfQ family protein	NA
UHGV-0076941_7	eggNOG-mapper	1089548.KI783301_gene2598	NA	NA
UHGV-0076941_7	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0076941_7	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0076941_7	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0076941_8	PHROG	phrog_6	baseplate protein	tail
UHGV-0076941_8	UniRef90	UniRef90_R6PLC6	Baseplate J family protein	NA
UHGV-0076941_8	eggNOG-mapper	696281.Desru_1323	phage Mu protein gp47-like protein	NA
UHGV-0076941_8	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0076941_8	COG	COG3299	NA	NA
UHGV-0076941_8	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0076941_9	PHROG	phrog_120	baseplate protein	tail
UHGV-0076941_9	UniRef90	UniRef90_A0A7X5DCS6	NA	NA
UHGV-0076941_9	eggNOG-mapper	1163671.JAGI01000002_gene2844	NA	NA
UHGV-0076941_9	Pfam	PF10934	NA	DUF2634
UHGV-0076941_9	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0076941_9	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0076941_10	PHROG	phrog_579	NA	unknown function
UHGV-0076941_10	UniRef90	UniRef90_UPI001D060FCE	NA	NA
UHGV-0076941_10	eggNOG-mapper	1151292.QEW_1352	NA	NA
UHGV-0076941_10	Pfam	PF10844	NA	DUF2577
UHGV-0076941_10	Structural annotation	PF10844, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0076941_11	PHROG	phrog_400	tail protein	tail
UHGV-0076941_11	UniRef90	UniRef90_A0A7X8EVX2	Hydrolase	NA
UHGV-0076941_11	eggNOG-mapper	697284.ERIC2_c23580	Phage-like element PBSX protein XkdQ	NA
UHGV-0076941_11	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0076941_11	Pfam	PF06725	3D domain	3D
UHGV-0076941_11	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0076941_12	KOfam	K12943	ygeR; lipoprotein YgeR	NA
UHGV-0076941_12	PHROG	phrog_380	endolysin	lysis
UHGV-0076941_12	UniRef90	UniRef90_N1ZL66	LysM domain-containing protein	NA
UHGV-0076941_12	eggNOG-mapper	97138.C820_00994	Lysin motif	NA
UHGV-0076941_12	Pfam	PF01476	LysM domain	LysM
UHGV-0076941_12	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0076941_13	PHROG	phrog_806	NA	unknown function
UHGV-0076941_13	eggNOG-mapper	397291.C804_03822	NA	NA
UHGV-0076941_13	Pfam	PF11611	NA	DUF4352
UHGV-0076941_13	Structural annotation	PF11611, MF_00791, TIGR04209, COG2967	NA	NA
UHGV-0076941_14	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0076941_14	UniRef90	UniRef90_UPI000A0712AC	tape measure protein	NA
UHGV-0076941_14	eggNOG-mapper	1118054.CAGW01000102_gene4711	tape measure	NA
UHGV-0076941_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0076941_14	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0076941_14	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0076941_14	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0076941_15	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0076941_15	UniRef90	UniRef90_UPI00101B7B80	XkdN-like protein	NA
UHGV-0076941_15	eggNOG-mapper	768704.Desmer_3279	PFAM Phage XkdN-like protein	NA
UHGV-0076941_15	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0076941_15	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0076941_16	PHROG	phrog_365	tail protein	tail
UHGV-0076941_16	UniRef90	UniRef90_A0A2K1EF16	Phage portal protein	NA
UHGV-0076941_16	eggNOG-mapper	1121121.KB894312_gene3149	Phage portal protein	NA
UHGV-0076941_16	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0076941_16	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0076941_17	PHROG	phrog_279	tail sheath	tail
UHGV-0076941_17	UniRef90	UniRef90_A0A1Q6K941	Phage tail protein	NA
UHGV-0076941_17	eggNOG-mapper	1029718.SFBM_0128	Phage tail sheath protein beta-sandwich domain	NA
UHGV-0076941_17	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0076941_17	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0076941_17	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0076941_17	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0076941_18	PHROG	phrog_966	NA	unknown function
UHGV-0076941_18	eggNOG-mapper	1195236.CTER_3998	NA	NA
UHGV-0076941_19	PHROG	phrog_525	NA	unknown function
UHGV-0076941_19	UniRef90	UniRef90_T3DEM0	Putative phage protein	NA
UHGV-0076941_19	eggNOG-mapper	1151292.QEW_1340	NA	NA
UHGV-0076941_19	Pfam	PF20765	NA	DUF6838
UHGV-0076941_19	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0076941_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0076941_20	UniRef90	UniRef90_A0A8B2WXM8	HK97 gp10 family phage protein	NA
UHGV-0076941_20	eggNOG-mapper	608534.GCWU000341_02289	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0076941_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0076941_20	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0076941_21	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0076941_21	UniRef90	UniRef90_UPI000ACDB421	ABC transporter ATP-binding protein	NA
UHGV-0076941_21	eggNOG-mapper	1408823.AXUS01000024_gene2719	NA	NA
UHGV-0076941_21	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0076941_22	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0076941_22	UniRef90	UniRef90_A0A8F2D6U0	Phage head-tail connector protein	NA
UHGV-0076941_22	eggNOG-mapper	1567012.A0A0A7RTF6_9VIRU	Phage gp6-like head-tail connector protein	NA
UHGV-0076941_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0076941_22	Structural annotation	PF05135	NA	NA
UHGV-0076941_23	PHROG	phrog_247	major head protein	head and packaging
UHGV-0076941_23	UniRef90	UniRef90_UPI000C089D46	phage coat protein	NA
UHGV-0076941_23	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0076941_23	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0076941_23	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0076941_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0076941_24	UniRef90	UniRef90_UPI001C013BCC	phage scaffolding protein	NA
UHGV-0076941_24	eggNOG-mapper	742740.HMPREF9474_02354	Phage minor structural protein GP20	NA
UHGV-0076941_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0076941_24	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0076941_26	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0076941_26	UniRef90	UniRef90_UPI00102FDD98	minor capsid protein	NA
UHGV-0076941_26	eggNOG-mapper	1411095.X5JAI9_9CAUD	Phage Mu protein F like protein	NA
UHGV-0076941_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0076941_26	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0076941_26	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0076941_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0076941_27	UniRef90	UniRef90_UPI000DE4FA1A	phage portal protein	NA
UHGV-0076941_27	eggNOG-mapper	1408823.AXUS01000024_gene2713	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0076941_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0076941_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0076941_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076941_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0076941_28	UniRef90	UniRef90_R6QB80	Phage terminase large subunit PBSX family	NA
UHGV-0076941_28	eggNOG-mapper	1321779.HMPREF1984_01311	Phage terminase, large subunit, PBSX family	NA
UHGV-0076941_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0076941_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0076941_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076941_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076941_28	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0076941_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0076941_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0076941_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0076941_29	UniRef90	UniRef90_UPI000CF38D95	terminase small subunit	NA
UHGV-0076941_29	eggNOG-mapper	1158614.I592_02274	Terminase small subunit	NA
UHGV-0076941_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0076941_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0076941_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0076941_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076941_30	UniRef90	UniRef90_UPI0011CB7084	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0076941_30	eggNOG-mapper	1232447.BAHW02000005_gene152	NA	NA
UHGV-0076941_30	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0076941_35	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0076941_35	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076941_35	UniRef90	UniRef90_A0A0U3FEM1	Endodeoxyribonuclease RusA family protein	NA
UHGV-0076941_35	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0076941_35	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0076941_35	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0076941_35	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0076941_36	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0076941_36	eggNOG-mapper	1158602.I590_00669	Replication initiation and membrane attachment	NA
UHGV-0076941_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0076941_36	Structural annotation	PF19481, PF04492, TIGR01610, COG5529	NA	NA
UHGV-0076941_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076941_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076941_37	UniRef90	UniRef90_R6PGX1	Single-stranded DNA-binding protein	NA
UHGV-0076941_37	eggNOG-mapper	1280680.AUJU01000003_gene3256	Single-strand binding protein family	NA
UHGV-0076941_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076941_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076941_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076941_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076941_37	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0076941_38	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0076941_38	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0076941_38	UniRef90	UniRef90_A0A7X8XIL0	MBL fold metallo-hydrolase	NA
UHGV-0076941_38	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0076941_38	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0076941_38	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0076941_38	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0076941_39	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0076941_39	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-0076941_39	eggNOG-mapper	526218.Sterm_1235	Phage recombination protein Bet	NA
UHGV-0076941_39	Pfam	PF03837	RecT family	RecT
UHGV-0076941_39	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0076941_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0076941_40	PHROG	phrog_674	NA	unknown function
UHGV-0076941_40	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-0076941_40	eggNOG-mapper	641112.ACOK01000103_gene524	NA	NA
UHGV-0076941_40	Pfam	PF07083	NA	DUF1351
UHGV-0076941_40	Structural annotation	PF07083	NA	NA
UHGV-0076941_41	Structural annotation	NF040595	NA	NA
UHGV-0076941_43	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0076941_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0076941_43	UniRef90	UniRef90_A0A1Y4HYP5	Repressor LexA	NA
UHGV-0076941_43	eggNOG-mapper	910314.HMPREF9220_1115	Peptidase S24-like	NA
UHGV-0076941_43	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0076941_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0076941_43	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0076941_44	PHROG	phrog_9592	NA	unknown function
UHGV-0076941_44	UniRef90	UniRef90_UPI001A8FC2B2	ParB/RepB/Spo0J family partition protein	NA
UHGV-0076941_44	eggNOG-mapper	1385513.N780_01885	DNA binding	NA
UHGV-0076941_44	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0076941_44	Structural annotation	MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0076941_45	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0076941_45	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0076941_45	UniRef90	UniRef90_UPI0009B9EFB3	DNA adenine methylase	NA
UHGV-0076941_45	eggNOG-mapper	445335.CBN_2962	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0076941_45	PADLOC	MTase_II_00144	Type II methyltransferase	RM
UHGV-0076941_45	COG	COG0338	DNA-adenine methylase	NA
UHGV-0076941_45	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-0076941_46	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0076941_46	PHROG	phrog_95	integrase	integration and excision
UHGV-0076941_46	UniRef90	UniRef90_A0A8J8M8Z3	Recombinase family protein	NA
UHGV-0076941_46	eggNOG-mapper	1291050.JAGE01000001_gene683	Resolvase, N-terminal domain protein	NA
UHGV-0076941_46	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0076941_46	Pfam	PF07508	Recombinase	Recombinase
UHGV-0076941_46	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0076941_46	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0076941_46	Structural annotation	PF07508, NF041201	NA	NA