UHGV-0076948

Genome information

Genome length 35,005 bps

CDS count 43

Completeness 91.49% (high-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076948
vOTU ID	vOTU-009047
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_135826
BioSample	SAMEA2737764
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.49% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.21
Jumbo phage	No

Genome content
Genome length	35,005 bps
GC content	42.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.57%
Average CDS length	757.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076948_2	KOfam	K22278	pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]	NA
UHGV-0076948_2	UniRef90	UniRef90_A0A3A8WH25	NodB homology domain-containing protein	NA
UHGV-0076948_2	eggNOG-mapper	1235799.C818_03403	Polysaccharide deacetylase	NA
UHGV-0076948_2	COG	COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	NA
UHGV-0076948_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0076948_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0076948_3	UniRef90	UniRef90_A0A371JBM7	Recombinase family protein	NA
UHGV-0076948_3	eggNOG-mapper	394503.Ccel_2440	resolvase	NA
UHGV-0076948_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0076948_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0076948_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0076948_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0076948_3	Structural annotation	PF07508, NF041201	NA	NA
UHGV-0076948_4	PHROG	phrog_1847	NA	unknown function
UHGV-0076948_4	UniRef90	UniRef90_A0A1Y4RD72	ATPase	NA
UHGV-0076948_4	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0076948_4	Pfam	PF13250	NA	DUF4041
UHGV-0076948_4	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0076948_4	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0076948_4	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-0076948_7	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0076948_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0076948_7	UniRef90	UniRef90_A0A350VVA1	XRE family transcriptional regulator	NA
UHGV-0076948_7	eggNOG-mapper	641107.CDLVIII_1309	Helix-turn-helix XRE-family like proteins	NA
UHGV-0076948_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076948_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0076948_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0076948_10	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0076948_10	PHROG	phrog_5696	NA	unknown function
UHGV-0076948_10	UniRef90	UniRef90_A0A3D2TWS8	Restriction endonuclease subunit M	NA
UHGV-0076948_10	eggNOG-mapper	948106.AWZT01000012_gene1459	N-6 DNA Methylase	NA
UHGV-0076948_10	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0076948_10	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0076948_10	Structural annotation	COG0286	NA	NA
UHGV-0076948_11	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0076948_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0076948_11	UniRef90	UniRef90_A0A3D2TUS5	Integrase	NA
UHGV-0076948_11	eggNOG-mapper	1507.HMPREF0262_00042	Belongs to the 'phage' integrase family	NA
UHGV-0076948_11	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0076948_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076948_11	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0076948_11	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0076948_12	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0076948_12	UniRef90	UniRef90_A0A3E2TS79	NA	NA
UHGV-0076948_12	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0076948_12	Pfam	PF14359	NA	DUF4406
UHGV-0076948_12	Structural annotation	PF14359	NA	NA
UHGV-0076948_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0076948_13	eggNOG-mapper	1415774.U728_484	NA	NA
UHGV-0076948_13	Structural annotation	PF00075, PF21578, MF_00042, NF001236, COG0328	NA	NA
UHGV-0076948_14	UniRef90	UniRef90_A0A3D2TVH9	HNH endonuclease	NA
UHGV-0076948_14	eggNOG-mapper	1540257.JQMW01000009_gene3675	HNH nucleases	NA
UHGV-0076948_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0076948_14	Structural annotation	COG5126	NA	NA
UHGV-0076948_15	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0076948_16	PHROG	phrog_8470	NA	unknown function
UHGV-0076948_16	UniRef90	UniRef90_UPI00164CA24C	PcfJ domain-containing protein	NA
UHGV-0076948_16	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-0076948_16	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0076948_16	Structural annotation	PF14284	NA	NA
UHGV-0076948_17	PHROG	phrog_15077	NA	unknown function
UHGV-0076948_17	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0076948_17	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-0076948_18	PHROG	phrog_2776	NA	unknown function
UHGV-0076948_18	eggNOG-mapper	1298920.KI911353_gene2703	NA	NA
UHGV-0076948_18	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0076948_19	KOfam	K07486	K07486; transposase	NA
UHGV-0076948_19	PHROG	phrog_2199	transposase	integration and excision
UHGV-0076948_19	UniRef90	UniRef90_U2PJW0	Transposase	NA
UHGV-0076948_19	eggNOG-mapper	1410626.JHXB01000003_gene1102	Transposase IS116/IS110/IS902 family	NA
UHGV-0076948_19	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-0076948_19	COG	COG3547	Transposase	NA
UHGV-0076948_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076948_20	UniRef90	UniRef90_UPI001CD68077	NA	NA
UHGV-0076948_20	eggNOG-mapper	478749.BRYFOR_07600	sigma factor activity	NA
UHGV-0076948_20	Pfam	PF07374	NA	DUF1492
UHGV-0076948_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0076948_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0076948_21	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0076948_21	UniRef90	UniRef90_A0A3D2TY04	Phage portal protein	NA
UHGV-0076948_21	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0076948_21	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0076948_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0076948_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076948_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076948_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0076948_22	UniRef90	UniRef90_A0A3D2TUW4	Terminase	NA
UHGV-0076948_22	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-0076948_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076948_22	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0076948_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0076948_23	UniRef90	UniRef90_A0A3D2TWD8	Capsid protein	NA
UHGV-0076948_23	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0076948_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0076948_24	PHROG	phrog_25639	NA	unknown function
UHGV-0076948_24	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0076948_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0076948_25	UniRef90	UniRef90_A0A3D2TWR6	Minor capsid protein	NA
UHGV-0076948_25	eggNOG-mapper	1282664.H354_06636	Phage minor capsid protein 2	NA
UHGV-0076948_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0076948_25	Structural annotation	PF06152	NA	NA
UHGV-0076948_28	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0076948_28	eggNOG-mapper	1282664.H354_06656	NA	NA
UHGV-0076948_29	PHROG	phrog_422	major head protein	head and packaging
UHGV-0076948_29	UniRef90	UniRef90_A0A414EG86	Phage capsid protein	NA
UHGV-0076948_29	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0076948_29	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0076948_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0076948_30	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0076948_31	PHROG	phrog_8710	NA	unknown function
UHGV-0076948_31	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0076948_31	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0076948_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0076948_32	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0076948_33	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0076948_33	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0076948_33	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0076948_33	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0076948_33	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0076948_34	PHROG	phrog_820	major tail protein	tail
UHGV-0076948_34	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0076948_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0076948_35	PHROG	phrog_8300	NA	unknown function
UHGV-0076948_35	eggNOG-mapper	483218.BACPEC_01148	NA	NA
UHGV-0076948_35	Structural annotation	PF06854	NA	NA
UHGV-0076948_36	PHROG	phrog_8355	NA	unknown function
UHGV-0076948_36	UniRef90	UniRef90_UPI001D0684E3	bacteriophage Gp15 family protein	NA
UHGV-0076948_36	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0076948_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0076948_36	Structural annotation	PF06854	NA	NA
UHGV-0076948_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0076948_38	UniRef90	UniRef90_A0A1C6JZ05	Phage-related protein	NA
UHGV-0076948_38	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0076948_38	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0076948_38	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0076948_39	PHROG	phrog_1194	NA	unknown function
UHGV-0076948_39	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0076948_39	Pfam	PF20458	NA	DUF6711
UHGV-0076948_39	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-0076948_40	PHROG	phrog_18190	NA	unknown function
UHGV-0076948_40	UniRef90	UniRef90_A0A3A8WLR6	Peptidase S74 domain-containing protein	NA
UHGV-0076948_40	eggNOG-mapper	1449050.JNLE01000003_gene3879	NA	NA
UHGV-0076948_40	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0076948_42	PHROG	phrog_17517	tail protein	tail
UHGV-0076948_42	eggNOG-mapper	1462526.BN990_04176	NA	NA
UHGV-0076948_43	Structural annotation	PF07233, MF_00791, NF003967, COG2967	NA	NA