UHGV-0076956

Genome information

Genome length 23,672 bps

CDS count 39

Completeness 63.72% (medium-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076956
vOTU ID	vOTU-022762
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_108179
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.07
Jumbo phage	No

Genome content
Genome length	23,672 bps
GC content	34.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	88.10%
Average CDS length	537.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076956_1	KOfam	K07487	K07487; transposase	NA
UHGV-0076956_1	PHROG	phrog_8928	NA	unknown function
UHGV-0076956_1	UniRef90	UniRef90_A0A6N9LBM4	IS1182 family transposase (Fragment)	NA
UHGV-0076956_1	eggNOG-mapper	469596.HMPREF9488_00903	Transposase DDE domain	NA
UHGV-0076956_1	Pfam	PF05598	NA	DUF772
UHGV-0076956_1	Pfam	PF13751	Transposase DDE domain	DDE_Tnp_1_6
UHGV-0076956_1	NCBIFam	NF033551.1	IS1182 family transposase	NA
UHGV-0076956_1	COG	COG3039	Transposase and inactivated derivatives, IS5 family	NA
UHGV-0076956_1	Structural annotation	PF01609, PF05598, NF033551, COG5421	NA	NA
UHGV-0076956_2	eggNOG-mapper	1410658.JHWI01000002_gene87	NA	NA
UHGV-0076956_4	KOfam	K14059	int; integrase	NA
UHGV-0076956_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0076956_4	UniRef90	UniRef90_A0A6N9L4Z3	Tyrosine-type recombinase/integrase	NA
UHGV-0076956_4	eggNOG-mapper	1122173.AXVL01000018_gene468	Pfam:Integrase_AP2	NA
UHGV-0076956_4	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0076956_4	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0076956_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076956_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076956_4	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0076956_5	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0076956_5	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0076956_5	UniRef90	UniRef90_UPI001C25F535	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0076956_5	eggNOG-mapper	764299.STRIC_2094	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0076956_5	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0076956_5	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0076956_5	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0076956_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0076956_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0076956_6	UniRef90	UniRef90_A0A6N9L4Y4	Helix-turn-helix domain-containing protein	NA
UHGV-0076956_6	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-0076956_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0076956_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0076956_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0076956_6	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974	NA	NA
UHGV-0076956_7	UniRef90	UniRef90_UPI001CF844D1	NA	NA
UHGV-0076956_7	eggNOG-mapper	257314.LJ_1456	NA	NA
UHGV-0076956_7	Pfam	PF05339	NA	DUF739
UHGV-0076956_7	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0076956_7	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0076956_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0076956_8	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0076956_8	UniRef90	UniRef90_A0A6N9L4S6	Bro-N domain-containing protein	NA
UHGV-0076956_8	eggNOG-mapper	1423758.BN55_09165	BRO family, N-terminal domain	NA
UHGV-0076956_8	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0076956_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0076956_8	COG	COG3617	Prophage antirepressor	NA
UHGV-0076956_8	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0076956_9	AcrCatalog	cluster_116087	NA	NA
UHGV-0076956_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076956_13	UniRef90	UniRef90_UPI0014313337	YqaJ viral recombinase family protein	NA
UHGV-0076956_13	eggNOG-mapper	857293.CAAU_0780	YqaJ-like viral recombinase domain	NA
UHGV-0076956_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0076956_13	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0076956_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0076956_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0076956_14	UniRef90	UniRef90_A0A412KEL9	XRE family transcriptional regulator	NA
UHGV-0076956_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0076956_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0076956_15	UniRef90	UniRef90_UPI0014317E61	recombinase RecT	NA
UHGV-0076956_15	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0076956_15	Pfam	PF03837	RecT family	RecT
UHGV-0076956_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0076956_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0076956_15	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0076956_16	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0076956_16	UniRef90	UniRef90_UPI001C395B09	winged helix-turn-helix transcriptional regulator	NA
UHGV-0076956_16	eggNOG-mapper	1147044.H9A0L9_9CAUD	calcium ion binding	NA
UHGV-0076956_16	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0076956_16	Structural annotation	PF09681, NF033788, COG0640	NA	NA
UHGV-0076956_19	PHROG	phrog_4019	NA	unknown function
UHGV-0076956_19	UniRef90	UniRef90_F9PY75	Conserved domain protein	NA
UHGV-0076956_20	PHROG	phrog_22292	NA	unknown function
UHGV-0076956_21	PHROG	phrog_22292	NA	unknown function
UHGV-0076956_21	eggNOG-mapper	1232446.BAIE02000041_gene2433	NA	NA
UHGV-0076956_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076956_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076956_25	UniRef90	UniRef90_A0A6N9L4V1	Single-stranded DNA-binding protein	NA
UHGV-0076956_25	eggNOG-mapper	428126.CLOSPI_02450	COG COG0629 Single-stranded DNA-binding protein	NA
UHGV-0076956_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076956_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076956_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076956_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076956_25	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0076956_26	eggNOG-mapper	1232446.BAIE02000041_gene2433	NA	NA
UHGV-0076956_28	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076956_28	UniRef90	UniRef90_A0A6N9L4W3	NA	NA
UHGV-0076956_28	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0076956_28	Pfam	PF06356	NA	DUF1064
UHGV-0076956_28	Structural annotation	PF06356	NA	NA
UHGV-0076956_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076956_31	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0076956_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0076956_31	Structural annotation	PF08281, MF_00674, NF007227, COG1191	NA	NA
UHGV-0076956_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0076956_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0076956_32	UniRef90	UniRef90_A0A6N9L4V4	Terminase small subunit	NA
UHGV-0076956_32	eggNOG-mapper	1504823.CCMM01000008_gene1049	DNA packaging	NA
UHGV-0076956_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0076956_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0076956_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0076956_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076956_33	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0076956_33	UniRef90	UniRef90_A0A6N9L4W9	PBSX family phage terminase large subunit	NA
UHGV-0076956_33	eggNOG-mapper	1504823.CCMM01000008_gene1048	DNA packaging	NA
UHGV-0076956_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0076956_33	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0076956_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076956_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076956_33	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0076956_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0076956_34	UniRef90	UniRef90_E2NR94	Putative phage portal protein, SPP1 family	NA
UHGV-0076956_34	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0076956_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0076956_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0076956_35	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0076956_35	UniRef90	UniRef90_E2NR95	Phage protein F-like protein	NA
UHGV-0076956_35	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0076956_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0076956_35	COG	COG2369	NA	NA
UHGV-0076956_35	Structural annotation	PF03496, PF04233, NF041404, TIGR01641, COG2369	NA	NA
UHGV-0076956_37	PHROG	phrog_30609	NA	unknown function
UHGV-0076956_37	Structural annotation	PF21485	NA	NA
UHGV-0076956_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0076956_38	UniRef90	UniRef90_UPI00137B133A	phage scaffolding protein	NA
UHGV-0076956_38	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0076956_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0076956_38	Structural annotation	PF06810	NA	NA
UHGV-0076956_39	PHROG	phrog_212	major head protein	head and packaging
UHGV-0076956_39	eggNOG-mapper	1196028.ALEF01000043_gene464	NA	NA