UHGV-0076958

Genome information

Genome length 19,160 bps

CDS count 26

Completeness 53.18% (medium-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076958
vOTU ID	vOTU-029566
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_108183
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.88
Jumbo phage	No

Genome content
Genome length	19,160 bps
GC content	34.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	96.28%
Average CDS length	713.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076958_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0076958_1	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0076958_2	UniRef90	UniRef90_A0A7X2XH56	HNH domain-containing protein	NA
UHGV-0076958_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0076958_3	Structural annotation	PF11570, NF038178, COG1842	NA	NA
UHGV-0076958_5	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0076958_5	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076958_5	UniRef90	UniRef90_UPI000E4F8168	HNH endonuclease	NA
UHGV-0076958_5	eggNOG-mapper	927704.SELR_11230	HNH endonuclease	NA
UHGV-0076958_5	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0076958_5	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0076958_6	PHROG	phrog_1066	NA	unknown function
UHGV-0076958_6	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-0076958_6	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0076958_7	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0076958_7	UniRef90	UniRef90_A0A412CHE2	Terminase large subunit	NA
UHGV-0076958_7	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-0076958_7	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0076958_7	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0076958_7	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0076958_7	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0076958_8	PHROG	phrog_12	portal protein	head and packaging
UHGV-0076958_8	UniRef90	UniRef90_UPI00142FCB51	phage portal protein	NA
UHGV-0076958_8	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-0076958_8	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0076958_8	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0076958_8	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0076958_9	KOfam	K06904	NA	NA
UHGV-0076958_9	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0076958_9	UniRef90	UniRef90_A0A412CHQ0	HK97 family phage prohead protease	NA
UHGV-0076958_9	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-0076958_9	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0076958_9	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0076958_9	COG	COG3740	Phage head maturation protease	NA
UHGV-0076958_9	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0076958_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-0076958_10	UniRef90	UniRef90_A0A412CI12	Phage major capsid protein	NA
UHGV-0076958_10	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-0076958_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0076958_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0076958_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0076958_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0076958_11	PHROG	phrog_32779	NA	unknown function
UHGV-0076958_11	eggNOG-mapper	742823.HMPREF9465_01295	Membrane	NA
UHGV-0076958_11	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0076958_12	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0076958_12	UniRef90	UniRef90_A0A412CHC9	Phage gp6-like head-tail connector protein	NA
UHGV-0076958_12	eggNOG-mapper	935948.KE386495_gene1332	Phage gp6-like head-tail connector protein	NA
UHGV-0076958_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0076958_12	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0076958_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0076958_13	PHROG	phrog_25	head closure Hc1	connector
UHGV-0076958_13	UniRef90	UniRef90_A0A412CHY1	Head-tail adaptor protein	NA
UHGV-0076958_13	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-0076958_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0076958_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0076958_13	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0076958_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0076958_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0076958_14	UniRef90	UniRef90_UPI0019591A25	HK97 gp10 family phage protein	NA
UHGV-0076958_14	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0076958_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0076958_14	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0076958_15	PHROG	phrog_525	NA	unknown function
UHGV-0076958_15	Pfam	PF20765	NA	DUF6838
UHGV-0076958_15	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0076958_16	PHROG	phrog_1480	tail sheath	tail
UHGV-0076958_16	UniRef90	UniRef90_UPI00195B2F80	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0076958_16	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-0076958_16	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0076958_16	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0076958_16	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0076958_17	PHROG	phrog_365	tail protein	tail
UHGV-0076958_17	UniRef90	UniRef90_A0A412CHD4	Phage portal protein	NA
UHGV-0076958_17	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-0076958_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0076958_17	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0076958_18	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0076958_18	UniRef90	UniRef90_A0A7Y2PM55	XkdN-like protein	NA
UHGV-0076958_18	eggNOG-mapper	568816.Acin_1336	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0076958_18	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0076958_18	Structural annotation	PF08890	NA	NA
UHGV-0076958_19	PHROG	phrog_2722	NA	unknown function
UHGV-0076958_20	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0076958_20	UniRef90	UniRef90_A0A412CHP1	Phage tail tape measure protein	NA
UHGV-0076958_20	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-0076958_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0076958_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0076958_20	COG	COG5283	Phage-related tail protein	NA
UHGV-0076958_20	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0076958_21	PHROG	phrog_5184	NA	unknown function
UHGV-0076958_21	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-0076958_21	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-0076958_21	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0076958_21	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0076958_21	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0076958_22	PHROG	phrog_400	tail protein	tail
UHGV-0076958_22	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-0076958_22	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-0076958_22	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0076958_22	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-0076958_23	PHROG	phrog_579	NA	unknown function
UHGV-0076958_23	UniRef90	UniRef90_A0A412CHC2	NA	NA
UHGV-0076958_23	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-0076958_23	Pfam	PF10844	NA	DUF2577
UHGV-0076958_23	Structural annotation	PF10844	NA	NA
UHGV-0076958_24	PHROG	phrog_120	baseplate protein	tail
UHGV-0076958_24	UniRef90	UniRef90_A0A412CHX1	NA	NA
UHGV-0076958_24	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-0076958_24	Pfam	PF10934	NA	DUF2634
UHGV-0076958_24	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0076958_24	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0076958_25	PHROG	phrog_6	baseplate protein	tail
UHGV-0076958_25	UniRef90	UniRef90_UPI001D09317C	baseplate J/gp47 family protein	NA
UHGV-0076958_25	eggNOG-mapper	568816.Acin_1959	Baseplate J-like protein	NA
UHGV-0076958_25	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0076958_25	COG	COG3299	NA	NA
UHGV-0076958_25	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0076958_26	PHROG	phrog_521	tail protein	tail
UHGV-0076958_26	UniRef90	UniRef90_UPI001D081220	YmfQ family protein	NA
UHGV-0076958_26	eggNOG-mapper	568816.Acin_1327	NA	NA
UHGV-0076958_26	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0076958_26	COG	COG3778	NA	NA
UHGV-0076958_26	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA