UHGV-0076995

Genome information

Genome length 38,995 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-0076995
vOTU ID	vOTU-014350
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_130748
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.45
Jumbo phage	No

Genome content
Genome length	38,995 bps
GC content	43.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.18%
Average CDS length	633.32 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0076995_1	KOfam	K14059	int; integrase	NA
UHGV-0076995_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0076995_1	UniRef90	UniRef90_A0A1C6FGR9	Integrase	NA
UHGV-0076995_1	eggNOG-mapper	1408823.AXUS01000024_gene2685	Arm DNA-binding domain	NA
UHGV-0076995_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0076995_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0076995_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0076995_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0076995_2	KOfam	K07449	K07449; similar to archaeal holliday junction resolvase and Mrr protein	NA
UHGV-0076995_2	PHROG	phrog_19856	NA	unknown function
UHGV-0076995_2	UniRef90	UniRef90_A0A356CZV8	Mrr_cat domain-containing protein	NA
UHGV-0076995_2	eggNOG-mapper	697329.Rumal_1169	Restriction endonuclease	NA
UHGV-0076995_2	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0076995_2	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0076995_2	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0076995_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0076995_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0076995_3	UniRef90	UniRef90_A0A373VMR3	Repressor LexA	NA
UHGV-0076995_3	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-0076995_3	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0076995_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0076995_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0076995_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0076995_4	UniRef90	UniRef90_A0A373VPI4	HTH cro/C1-type domain-containing protein	NA
UHGV-0076995_4	eggNOG-mapper	1292035.H476_1036	NA	NA
UHGV-0076995_4	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0076995_6	PHROG	phrog_750	NA	unknown function
UHGV-0076995_6	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0076995_6	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0076995_8	Structural annotation	PF16857, MF_00273, NF001981	NA	NA
UHGV-0076995_9	Structural annotation	PF11372	NA	NA
UHGV-0076995_14	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0076995_14	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0076995_14	UniRef90	UniRef90_A0A1V5S2H3	AAA_23 domain-containing protein	NA
UHGV-0076995_14	eggNOG-mapper	537013.CLOSTMETH_01714	nuclear chromosome segregation	NA
UHGV-0076995_14	PADLOC	AAA_15	NA	NA
UHGV-0076995_14	Pfam	PF13555	P-loop containing region of AAA domain	AAA_29
UHGV-0076995_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0076995_14	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0076995_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0076995_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0076995_15	UniRef90	UniRef90_R6CEX4	Recombinase phage RecT family	NA
UHGV-0076995_15	eggNOG-mapper	1111134.HMPREF1253_0395	RecT family	NA
UHGV-0076995_15	Pfam	PF03837	RecT family	RecT
UHGV-0076995_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0076995_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0076995_15	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0076995_16	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0076995_16	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0076995_16	UniRef90	UniRef90_R6D1H0	Lactamase_B domain-containing protein	NA
UHGV-0076995_16	eggNOG-mapper	537013.CLOSTMETH_01716	Metallo-beta-lactamase superfamily	NA
UHGV-0076995_16	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0076995_16	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0076995_16	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0076995_18	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0076995_18	UniRef90	UniRef90_A0A5P0ZU60	Replication terminator protein	NA
UHGV-0076995_18	eggNOG-mapper	756499.Desde_1051	NA	NA
UHGV-0076995_19	PHROG	phrog_1029	NA	unknown function
UHGV-0076995_19	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0076995_19	eggNOG-mapper	349161.Dred_1186	NA	NA
UHGV-0076995_19	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0076995_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0076995_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0076995_20	UniRef90	UniRef90_W0U7J4	Single-stranded DNA-binding protein	NA
UHGV-0076995_20	eggNOG-mapper	1160721.RBI_II00278	Single-stranded DNA-binding protein	NA
UHGV-0076995_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0076995_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0076995_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0076995_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0076995_20	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0076995_21	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0076995_21	UniRef90	UniRef90_B1C7J8	DnaD domain protein	NA
UHGV-0076995_21	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0076995_21	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0076995_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0076995_21	Structural annotation	PF14297	NA	NA
UHGV-0076995_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0076995_22	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0076995_22	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0076995_22	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0076995_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0076995_22	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0076995_24	UniRef90	UniRef90_A0A373VND1	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0076995_24	Structural annotation	PF07374	NA	NA
UHGV-0076995_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0076995_27	PHROG	phrog_18557	terminase large subunit	head and packaging
UHGV-0076995_27	UniRef90	UniRef90_A0A1C6IMR2	Phage terminase, large subunit, PBSX family	NA
UHGV-0076995_27	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0076995_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0076995_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0076995_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0076995_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0076995_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0076995_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0076995_28	UniRef90	UniRef90_R6TDI6	Phage portal protein SPP1 Gp6-like	NA
UHGV-0076995_28	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0076995_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0076995_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0076995_29	UniRef90	UniRef90_R6SXL7	Phage minor capsid protein 2	NA
UHGV-0076995_29	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0076995_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0076995_29	COG	COG2369	NA	NA
UHGV-0076995_29	Structural annotation	PF06152	NA	NA
UHGV-0076995_30	Structural annotation	PF12305	NA	NA
UHGV-0076995_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0076995_31	UniRef90	UniRef90_R6U550	Phage minor structural protein GP20	NA
UHGV-0076995_31	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0076995_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0076995_31	Structural annotation	PF06810	NA	NA
UHGV-0076995_32	PHROG	phrog_544	major head protein	head and packaging
UHGV-0076995_32	UniRef90	UniRef90_R6T873	Major head protein	NA
UHGV-0076995_32	eggNOG-mapper	936580.HMPREF1516_0718	NA	NA
UHGV-0076995_32	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0076995_32	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0076995_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0076995_33	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0076995_33	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0076995_34	PHROG	phrog_3366	NA	unknown function
UHGV-0076995_34	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0076995_34	Pfam	PF20536	NA	DUF6751
UHGV-0076995_34	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0076995_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0076995_35	UniRef90	UniRef90_UPI00143BEF55	minor capsid protein	NA
UHGV-0076995_35	eggNOG-mapper	1120998.AUFC01000030_gene2239	Minor capsid protein	NA
UHGV-0076995_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0076995_35	Structural annotation	PF11114	NA	NA
UHGV-0076995_36	PHROG	phrog_3266	tail completion	connector
UHGV-0076995_36	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-0076995_36	Structural annotation	PF20765	NA	NA
UHGV-0076995_37	PHROG	phrog_3099	NA	unknown function
UHGV-0076995_37	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0076995_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0076995_38	PHROG	phrog_11299	NA	unknown function
UHGV-0076995_38	Structural annotation	PF20378	NA	NA
UHGV-0076995_39	PHROG	phrog_706	NA	unknown function
UHGV-0076995_39	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-0076995_39	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0076995_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0076995_39	Structural annotation	PF06854	NA	NA
UHGV-0076995_40	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0076995_40	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0076995_40	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0076995_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0076995_40	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0076995_41	PHROG	phrog_1194	NA	unknown function
UHGV-0076995_41	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-0076995_41	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0076995_42	PHROG	phrog_6616	tail protein	tail
UHGV-0076995_42	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-0076995_42	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0076995_44	UniRef90	UniRef90_A0A6S6XJ17	FHA domain-containing protein	NA
UHGV-0076995_44	eggNOG-mapper	97139.C824_00239	NA	NA
UHGV-0076995_44	Structural annotation	PF19789	NA	NA
UHGV-0076995_45	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-0076995_45	Structural annotation	PF10651	NA	NA
UHGV-0076995_46	PHROG	phrog_19280	NA	unknown function
UHGV-0076995_46	UniRef90	UniRef90_W0U6W8	NA	NA
UHGV-0076995_46	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0076995_46	Pfam	PF19789	NA	DUF6273
UHGV-0076995_46	Structural annotation	PF19789	NA	NA
UHGV-0076995_48	PHROG	phrog_134	NA	unknown function
UHGV-0076995_48	UniRef90	UniRef90_A0A3R6AA38	XkdX family protein	NA
UHGV-0076995_48	eggNOG-mapper	1298920.KI911353_gene543	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0076995_48	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0076995_49	PHROG	phrog_199	holin	lysis
UHGV-0076995_49	UniRef90	UniRef90_A0A373XMP0	Holin	NA
UHGV-0076995_49	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0076995_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0076995_49	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0076995_49	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0076995_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0076995_50	PHROG	phrog_297	holin	lysis
UHGV-0076995_50	UniRef90	UniRef90_A0A356CY82	Peptidase C51 domain-containing protein	NA
UHGV-0076995_50	eggNOG-mapper	1160721.RBI_II00521	hydrolase, family 25	NA
UHGV-0076995_50	Pfam	PF05257	CHAP domain	CHAP
UHGV-0076995_50	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0076995_50	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-0076995_51	PHROG	phrog_5978	NA	unknown function
UHGV-0076995_51	UniRef90	UniRef90_R5GRF3	Fic family protein	NA
UHGV-0076995_51	eggNOG-mapper	936375.HMPREF1152_1541	Filamentation induced by cAMP protein fic	NA
UHGV-0076995_51	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0076995_51	COG	COG3177	Fic family protein	NA
UHGV-0076995_51	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0076995_52	UniRef90	UniRef90_A0A3A6ENN4	DNA-binding protein	NA
UHGV-0076995_52	eggNOG-mapper	1507.HMPREF0262_00031	Helix-turn-helix domain	NA
UHGV-0076995_52	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0076995_53	PHROG	phrog_24764	NA	unknown function
UHGV-0076995_53	UniRef90	UniRef90_A0A3A6E721	TnpV protein	NA
UHGV-0076995_53	eggNOG-mapper	428125.CLOLEP_03218	NA	NA
UHGV-0076995_53	Pfam	PF14198	Transposon-encoded protein TnpV	TnpV
UHGV-0076995_53	Structural annotation	PF14198	NA	NA
UHGV-0076995_54	PHROG	phrog_12156	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0076995_54	UniRef90	UniRef90_A0A374N456	Transcriptional regulator	NA
UHGV-0076995_54	eggNOG-mapper	2754.EH55_02765	transcriptional regulator	NA
UHGV-0076995_54	PADLOC	pAgo_WP_028663822.1	NA	Argonaute
UHGV-0076995_54	Pfam	PF04326	Schlafen, AlbA_2	SLFN_AlbA_2
UHGV-0076995_54	Pfam	PF13749	Putative ATP-dependent DNA helicase recG C-terminal	HATPase_c_4
UHGV-0076995_54	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0076995_54	Structural annotation	PF04326, PF13749, PF13412, MF_01819, MF_00638, NF038251, NF033091, COG2865	NA	NA
UHGV-0076995_56	PHROG	phrog_29952	NA	unknown function
UHGV-0076995_56	eggNOG-mapper	936375.HMPREF1152_1623	Evidence 4 Homologs of previously reported genes of	NA
UHGV-0076995_56	Pfam	PF20355	NA	DUF6650
UHGV-0076995_57	eggNOG-mapper	1235790.C805_02814	DNA methylase	NA
UHGV-0076995_57	COG	COG2189	Adenine specific DNA methylase Mod	NA