UHGV-0077011

Genome information

vOTU vOTU-019979

Genome length 27,142 bps

CDS count 36

Completeness 60.16% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077011
vOTU ID	vOTU-019979
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_132708
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.42
Jumbo phage	No

Genome content
Genome length	27,142 bps
GC content	41.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	90.46%
Average CDS length	683.17 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077011_1	UniRef90	UniRef90_A0A143XE16	CarD-like/TRCF domain protein	NA
UHGV-0077011_1	eggNOG-mapper	1469948.JPNB01000002_gene3640	Transcriptional regulator, CarD family	NA
UHGV-0077011_1	Pfam	PF02559	CarD-like/TRCF RID domain	CarD_TRCF_RID
UHGV-0077011_1	COG	COG1329	RNA polymerase-interacting regulator, CarD/CdnL/TRCF family	NA
UHGV-0077011_4	PHROG	phrog_38832	NA	unknown function
UHGV-0077011_4	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0077011_4	Structural annotation	PF09038	NA	NA
UHGV-0077011_6	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0077011_6	AcrCatalog	cluster_11670	NA	NA
UHGV-0077011_7	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0077011_7	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0077011_7	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0077011_7	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0077011_7	Structural annotation	PF16677	NA	NA
UHGV-0077011_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077011_8	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0077011_8	UniRef90	UniRef90_A0A395X9V4	PBSX family phage terminase large subunit	NA
UHGV-0077011_8	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0077011_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0077011_8	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0077011_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077011_8	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0077011_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-0077011_9	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0077011_9	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0077011_9	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0077011_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0077011_10	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-0077011_10	eggNOG-mapper	1449343.JQLQ01000002_gene1329	Minor capsid protein	NA
UHGV-0077011_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0077011_10	Structural annotation	PF11114	NA	NA
UHGV-0077011_11	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0077011_11	UniRef90	UniRef90_UPI001C0EDE82	phage minor capsid protein	NA
UHGV-0077011_11	eggNOG-mapper	642492.Clole_0816	NA	NA
UHGV-0077011_11	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0077011_11	COG	COG2369	NA	NA
UHGV-0077011_11	Structural annotation	PF06152	NA	NA
UHGV-0077011_12	PHROG	phrog_3754	NA	unknown function
UHGV-0077011_12	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0077011_13	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0077011_13	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0077011_14	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0077011_14	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0077011_14	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0077011_15	PHROG	phrog_21718	NA	unknown function
UHGV-0077011_15	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0077011_16	PHROG	phrog_22984	NA	unknown function
UHGV-0077011_17	PHROG	phrog_16490	NA	unknown function
UHGV-0077011_17	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0077011_18	PHROG	phrog_20016	NA	unknown function
UHGV-0077011_18	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0077011_18	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0077011_18	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0077011_19	PHROG	phrog_28802	NA	unknown function
UHGV-0077011_19	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0077011_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0077011_20	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0077011_20	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0077011_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0077011_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-0077011_21	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0077011_21	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0077011_21	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0077011_21	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0077011_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0077011_22	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0077011_25	PHROG	phrog_18218	NA	unknown function
UHGV-0077011_25	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0077011_25	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0077011_25	Structural annotation	PF06946	NA	NA
UHGV-0077011_26	PHROG	phrog_3366	NA	unknown function
UHGV-0077011_26	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0077011_26	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0077011_27	PHROG	phrog_3266	tail completion	connector
UHGV-0077011_27	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0077011_27	Structural annotation	PF12691	NA	NA
UHGV-0077011_28	PHROG	phrog_3099	NA	unknown function
UHGV-0077011_28	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0077011_28	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0077011_29	PHROG	phrog_11299	NA	unknown function
UHGV-0077011_29	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0077011_29	Structural annotation	PF10666	NA	NA
UHGV-0077011_30	PHROG	phrog_706	NA	unknown function
UHGV-0077011_30	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0077011_30	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0077011_30	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0077011_30	Structural annotation	PF06854	NA	NA
UHGV-0077011_31	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0077011_31	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0077011_31	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0077011_31	COG	COG1511	NA	NA
UHGV-0077011_31	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0077011_32	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0077011_33	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0077011_33	PHROG	phrog_6616	tail protein	tail
UHGV-0077011_33	UniRef90	UniRef90_A0A2V2D052	Peptidase S74 domain-containing protein	NA
UHGV-0077011_33	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0077011_33	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0077011_33	COG	COG4926	Phage-related protein	NA
UHGV-0077011_33	Structural annotation	PF05113, PF01835, PF03921, NF033848, COG3500	NA	NA
UHGV-0077011_36	PHROG	phrog_38078	NA	unknown function
UHGV-0077011_36	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0077011_36	eggNOG-mapper	476272.RUMHYD_00843	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0077011_36	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0077011_36	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA