UHGV-0077029

Genome information

Genome length 42,887 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9670

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077029
vOTU ID	vOTU-065301
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_124639
BioSample	SAMEA2737807
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9670
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.37
Jumbo phage	No

Genome content
Genome length	42,887 bps
GC content	39.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	90.04%
Average CDS length	615.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077029_2	PHROG	phrog_18190	NA	unknown function
UHGV-0077029_2	UniRef90	UniRef90_UPI001C01E293	tail fiber domain-containing protein	NA
UHGV-0077029_2	eggNOG-mapper	483218.BACPEC_01143	NA	NA
UHGV-0077029_2	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0077029_3	PHROG	phrog_1194	NA	unknown function
UHGV-0077029_3	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0077029_3	Pfam	PF20458	NA	DUF6711
UHGV-0077029_3	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0077029_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0077029_4	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0077029_4	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0077029_4	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0077029_4	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0077029_6	PHROG	phrog_706	NA	unknown function
UHGV-0077029_6	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-0077029_6	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0077029_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0077029_6	Structural annotation	PF06854	NA	NA
UHGV-0077029_7	PHROG	phrog_11299	NA	unknown function
UHGV-0077029_7	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0077029_7	Structural annotation	PF10666	NA	NA
UHGV-0077029_8	PHROG	phrog_3099	NA	unknown function
UHGV-0077029_8	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0077029_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0077029_9	PHROG	phrog_3266	tail completion	connector
UHGV-0077029_9	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0077029_9	Structural annotation	PF20765	NA	NA
UHGV-0077029_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0077029_10	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0077029_10	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0077029_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0077029_10	Structural annotation	PF11114	NA	NA
UHGV-0077029_11	PHROG	phrog_3366	NA	unknown function
UHGV-0077029_11	Pfam	PF20536	NA	DUF6751
UHGV-0077029_11	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0077029_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0077029_12	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0077029_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0077029_13	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0077029_13	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0077029_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0077029_14	UniRef90	UniRef90_UPI0018995066	phage scaffolding protein	NA
UHGV-0077029_14	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0077029_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0077029_14	Structural annotation	PF06810	NA	NA
UHGV-0077029_15	PHROG	phrog_2616	NA	unknown function
UHGV-0077029_16	Structural annotation	PF06442, MF_01194, NF000331, COG5475	NA	NA
UHGV-0077029_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0077029_17	UniRef90	UniRef90_UPI001897AC3D	phage minor capsid protein	NA
UHGV-0077029_17	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0077029_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0077029_17	Pfam	PF21814	NA	DUF6883
UHGV-0077029_17	COG	COG2369	NA	NA
UHGV-0077029_17	Structural annotation	PF06152, PF18825	NA	NA
UHGV-0077029_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0077029_18	UniRef90	UniRef90_UPI00189C53D6	phage capsid protein	NA
UHGV-0077029_18	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0077029_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0077029_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077029_19	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0077029_19	UniRef90	UniRef90_UPI00189AB5B3	terminase family protein	NA
UHGV-0077029_19	eggNOG-mapper	1304866.K413DRAFT_3034	Phage terminase, large subunit, PBSX family	NA
UHGV-0077029_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0077029_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077029_19	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0077029_20	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0077029_20	UniRef90	UniRef90_UPI001A9BCC34	helix-turn-helix domain-containing protein	NA
UHGV-0077029_20	eggNOG-mapper	693746.OBV_18020	transposase activity	NA
UHGV-0077029_20	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0077029_20	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0077029_20	Structural annotation	PF07141	NA	NA
UHGV-0077029_21	Structural annotation	TIGR01636	NA	NA
UHGV-0077029_22	Structural annotation	PF14282, COG5570	NA	NA
UHGV-0077029_24	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077029_24	UniRef90	UniRef90_R6QZD0	HNH endonuclease	NA
UHGV-0077029_24	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0077029_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0077029_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0077029_24	Structural annotation	PF13395, TIGR02646, COG1403	NA	NA
UHGV-0077029_27	Structural annotation	PF09889	NA	NA
UHGV-0077029_28	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0077029_28	UniRef90	UniRef90_UPI000C07D7A2	NA	NA
UHGV-0077029_28	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0077029_28	Pfam	PF06048	NA	DUF927
UHGV-0077029_28	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0077029_28	COG	COG5519	NA	NA
UHGV-0077029_28	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0077029_29	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0077029_29	PHROG	phrog_11992	NA	unknown function
UHGV-0077029_29	UniRef90	UniRef90_A0A358PLG9	DNA primase	NA
UHGV-0077029_29	eggNOG-mapper	1105031.HMPREF1141_1761	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0077029_29	PADLOC	drt-cluster192	DRT	DRT
UHGV-0077029_29	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0077029_29	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0077029_29	Structural annotation	PF01807	NA	NA
UHGV-0077029_31	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0077029_31	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-0077029_31	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-0077029_31	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0077029_31	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0077029_32	PHROG	phrog_8600	NA	unknown function
UHGV-0077029_32	UniRef90	UniRef90_F9MTR3	YozE_SAM_like domain-containing protein	NA
UHGV-0077029_32	eggNOG-mapper	879308.HMPREF9130_0832	YozE SAM-like fold	NA
UHGV-0077029_32	Pfam	PF06855	YozE SAM-like fold	YozE_SAM_like
UHGV-0077029_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0077029_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0077029_33	UniRef90	UniRef90_A0A3D0X741	Single-stranded DNA-binding protein	NA
UHGV-0077029_33	eggNOG-mapper	1105031.HMPREF1141_2832	Single-stranded DNA-binding protein	NA
UHGV-0077029_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0077029_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0077029_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0077029_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0077029_33	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0077029_34	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077029_34	UniRef90	UniRef90_A0A3D0X749	NA	NA
UHGV-0077029_34	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0077029_34	Pfam	PF12684	NA	DUF3799
UHGV-0077029_34	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0077029_34	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0077029_35	PHROG	phrog_21613	NA	unknown function
UHGV-0077029_35	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0077029_36	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0077029_36	PHROG	phrog_1499	NA	unknown function
UHGV-0077029_36	UniRef90	UniRef90_A0A374HKI1	AAA_23 domain-containing protein	NA
UHGV-0077029_36	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-0077029_36	Pfam	PF13476	AAA domain	AAA_23
UHGV-0077029_36	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0077029_36	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0077029_40	UniRef90	UniRef90_UPI0005510EBF	helix-turn-helix domain-containing protein	NA
UHGV-0077029_40	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0077029_41	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0077029_42	PHROG	phrog_9576	NA	unknown function
UHGV-0077029_42	UniRef90	UniRef90_A0A1Y4NBA9	YozE_SAM_like domain-containing protein	NA
UHGV-0077029_42	eggNOG-mapper	689781.AUJX01000031_gene124	NA	NA
UHGV-0077029_44	Structural annotation	COG1862	NA	NA
UHGV-0077029_45	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-0077029_46	UniRef90	UniRef90_A0A373XYJ8	XRE family transcriptional regulator	NA
UHGV-0077029_46	eggNOG-mapper	887325.HMPREF0381_0113	NA	NA
UHGV-0077029_46	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0077029_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0077029_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077029_47	UniRef90	UniRef90_A0A136WE02	Helix-turn-helix domain protein	NA
UHGV-0077029_47	eggNOG-mapper	279010.BL03621	Peptidase S24-like	NA
UHGV-0077029_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0077029_47	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0077029_47	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0077029_48	PHROG	phrog_1914	NA	unknown function
UHGV-0077029_48	UniRef90	UniRef90_A0A373XNL4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0077029_48	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0077029_48	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0077029_48	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0077029_48	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0077029_49	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0077029_50	KOfam	K14059	int; integrase	NA
UHGV-0077029_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0077029_50	UniRef90	UniRef90_UPI00164B8B01	site-specific integrase	NA
UHGV-0077029_50	eggNOG-mapper	1095750.HMPREF9970_1688	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0077029_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077029_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077029_50	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0077029_51	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0077029_51	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0077029_51	UniRef90	UniRef90_A0A1G4W858	RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0077029_51	eggNOG-mapper	1499684.CCNP01000023_gene3381	Belongs to the sigma-70 factor family. ECF subfamily	NA
UHGV-0077029_51	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0077029_51	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0077029_51	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0077029_51	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0077029_51	Structural annotation	PF08281, PF04542, MF_00962, TIGR02985, COG1595	NA	NA
UHGV-0077029_53	eggNOG-mapper	1410658.JHWI01000016_gene1772	NA	NA
UHGV-0077029_54	UniRef90	UniRef90_A0A2N0US34	ABC-type transport system involved in multi-copper enzyme maturation, permease component	NA
UHGV-0077029_54	eggNOG-mapper	1160721.RBI_I01259	NA	NA
UHGV-0077029_55	KOfam	K25152	gldA; gliding motility-associated transport system ATP-binding protein	NA
UHGV-0077029_55	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0077029_55	UniRef90	UniRef90_R5E2Q8	ABC-type multidrug transport system ATPase component	NA
UHGV-0077029_55	eggNOG-mapper	877411.JMMA01000002_gene605	ABC transporter	NA
UHGV-0077029_55	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0077029_55	COG	COG1131	ABC-type multidrug transport system, ATPase component	NA
UHGV-0077029_55	Structural annotation	PF00005, MF_01005, TIGR01188, COG1131	NA	NA
UHGV-0077029_56	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0077029_56	PHROG	phrog_9764	NA	unknown function
UHGV-0077029_56	UniRef90	UniRef90_UPI000A01CC4B	type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-0077029_56	eggNOG-mapper	1282887.AUJG01000017_gene1246	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-0077029_56	PADLOC	AbiQ	AbiQ	Abi
UHGV-0077029_56	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
UHGV-0077029_57	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0077029_57	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0077029_57	UniRef90	UniRef90_A0A1G4W858	RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0077029_57	eggNOG-mapper	1499684.CCNP01000023_gene3381	Belongs to the sigma-70 factor family. ECF subfamily	NA
UHGV-0077029_57	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0077029_57	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0077029_57	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0077029_57	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0077029_57	Structural annotation	PF08281, PF04542, MF_00962, TIGR02985, COG1595	NA	NA
UHGV-0077029_60	Pfam	PF20234	NA	DUF6591
UHGV-0077029_60	Structural annotation	PF20234	NA	NA
UHGV-0077029_61	KOfam	K12132	prkC, stkP; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]	NA
UHGV-0077029_61	PHROG	phrog_2361	serine-threonine kinase	other
UHGV-0077029_61	UniRef90	UniRef90_R6MTM0	Protein kinase domain-containing protein	NA
UHGV-0077029_61	eggNOG-mapper	1280689.AUJC01000004_gene249	Protein kinase domain	NA
UHGV-0077029_61	PADLOC	Stk2	NA	NA
UHGV-0077029_61	Pfam	PF00069	Protein kinase domain	Pkinase
UHGV-0077029_61	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0077029_62	UniRef90	UniRef90_UPI001062ACBA	XRE family transcriptional regulator	NA
UHGV-0077029_62	eggNOG-mapper	537013.CLOSTMETH_00224	NA	NA