UHGV-0077038

Genome information

Genome length 37,287 bps

CDS count 67

Completeness 98.62% (high-quality)

geNomad score 0.9425

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077038
vOTU ID	vOTU-014324
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_111676
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.62% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9425
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.42
Jumbo phage	No

Genome content
Genome length	37,287 bps
GC content	33.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	93.01%
Average CDS length	522.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077038_1	KOfam	K14059	int; integrase	NA
UHGV-0077038_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0077038_1	UniRef90	UniRef90_UPI000E4CB1B1	site-specific integrase	NA
UHGV-0077038_1	eggNOG-mapper	1232446.BAIE02000011_gene1633	Site-specific recombinase, phage integrase family	NA
UHGV-0077038_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0077038_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077038_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077038_1	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0077038_3	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0077038_3	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0077038_3	UniRef90	UniRef90_F3AAT6	BRCT domain-containing protein	NA
UHGV-0077038_3	eggNOG-mapper	796945.HMPREF1145_0842	3'-5' exonuclease	NA
UHGV-0077038_3	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0077038_3	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0077038_3	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0077038_3	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0077038_3	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0077038_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0077038_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0077038_5	UniRef90	UniRef90_UPI001D076F33	XRE family transcriptional regulator	NA
UHGV-0077038_5	eggNOG-mapper	1111454.HMPREF1250_0782	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077038_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077038_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0077038_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0077038_5	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0077038_6	UniRef90	UniRef90_UPI001D070C1D	helix-turn-helix transcriptional regulator	NA
UHGV-0077038_6	eggNOG-mapper	1321782.HMPREF1986_02244	Helix-turn-helix domain	NA
UHGV-0077038_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077038_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077038_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0077038_7	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0077038_7	UniRef90	UniRef90_UPI001D093EF2	ORF6C domain-containing protein	NA
UHGV-0077038_7	eggNOG-mapper	1232446.BAIE02000011_gene1630	ORF6C domain	NA
UHGV-0077038_7	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0077038_7	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0077038_7	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0077038_7	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0077038_11	PHROG	phrog_6996	NA	unknown function
UHGV-0077038_15	PHROG	phrog_7445	NA	unknown function
UHGV-0077038_15	UniRef90	UniRef90_UPI00189C8A62	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0077038_15	eggNOG-mapper	1268240.ATFI01000007_gene436	PcfK-like protein	NA
UHGV-0077038_15	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0077038_15	Structural annotation	PF14058	NA	NA
UHGV-0077038_16	PHROG	phrog_8470	NA	unknown function
UHGV-0077038_16	UniRef90	UniRef90_UPI000495B0A2	PcfJ domain-containing protein	NA
UHGV-0077038_16	eggNOG-mapper	1232446.BAIE02000002_gene802	PcfJ-like protein	NA
UHGV-0077038_16	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0077038_16	Structural annotation	PF14284, NF008072	NA	NA
UHGV-0077038_20	Structural annotation	PF13463, MF_01909, NF033788, COG1846	NA	NA
UHGV-0077038_21	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0077038_21	PHROG	phrog_216	integrase	integration and excision
UHGV-0077038_21	UniRef90	UniRef90_G9R0Z2	Tyr recombinase domain-containing protein	NA
UHGV-0077038_21	eggNOG-mapper	1232446.BAIE02000011_gene1620	Integrase	NA
UHGV-0077038_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077038_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077038_21	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0077038_23	eggNOG-mapper	1232446.BAIE02000011_gene1618	NA	NA
UHGV-0077038_27	PHROG	phrog_625	NA	unknown function
UHGV-0077038_27	UniRef90	UniRef90_A0A3E3EHP8	ASCH domain-containing protein	NA
UHGV-0077038_27	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0077038_27	Structural annotation	PF12961, NF002008, COG2028	NA	NA
UHGV-0077038_28	PHROG	phrog_421	NA	unknown function
UHGV-0077038_28	Pfam	PF10979	NA	DUF2786
UHGV-0077038_28	COG	COG1451	UTP pyrophosphatase, metal-dependent hydrolase family	NA
UHGV-0077038_30	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0077038_30	UniRef90	UniRef90_UPI000497F8A6	helix-turn-helix domain-containing protein	NA
UHGV-0077038_30	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0077038_30	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0077038_30	Structural annotation	PF01978, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0077038_31	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0077038_31	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0077038_31	UniRef90	UniRef90_G9R103	SF4 helicase domain-containing protein	NA
UHGV-0077038_31	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-0077038_31	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0077038_31	COG	COG0305	Replicative DNA helicase	NA
UHGV-0077038_31	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0077038_32	UniRef90	UniRef90_G9R105	HIPIP domain-containing protein	NA
UHGV-0077038_32	Pfam	PF01355	High potential iron-sulfur protein	HIPIP
UHGV-0077038_33	PHROG	phrog_1828	NA	unknown function
UHGV-0077038_35	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-0077038_36	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077038_36	UniRef90	UniRef90_A0A3E3EGW1	HNH endonuclease	NA
UHGV-0077038_36	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-0077038_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0077038_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0077038_38	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0077038_38	UniRef90	UniRef90_A0A3E3EG90	RNA polymerase subunit sigma-70	NA
UHGV-0077038_38	eggNOG-mapper	864178.E2ELI1_9CAUD	Phage terminase, small subunit	NA
UHGV-0077038_38	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0077038_38	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0077038_39	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0077038_39	UniRef90	UniRef90_A0A3E3EH16	Terminase	NA
UHGV-0077038_39	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0077038_39	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0077038_39	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0077038_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0077038_39	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0077038_40	PHROG	phrog_12	portal protein	head and packaging
UHGV-0077038_40	UniRef90	UniRef90_A0A3E3EI59	Phage portal protein	NA
UHGV-0077038_40	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0077038_40	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0077038_40	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0077038_40	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0077038_40	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0077038_41	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0077038_41	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0077038_41	UniRef90	UniRef90_A0A3E3EG77	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0077038_41	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0077038_41	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0077038_41	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0077038_41	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0077038_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0077038_43	UniRef90	UniRef90_A0A3E3EGM4	Phage major capsid protein	NA
UHGV-0077038_43	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0077038_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0077038_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0077038_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077038_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0077038_44	PHROG	phrog_749	NA	unknown function
UHGV-0077038_44	eggNOG-mapper	1415774.U728_1251	NA	NA
UHGV-0077038_45	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0077038_45	Structural annotation	PF16467, MF_01457, TIGR01563, COG5614	NA	NA
UHGV-0077038_46	PHROG	phrog_78	tail terminator	connector
UHGV-0077038_46	UniRef90	UniRef90_A0A0Z8IUE1	Prophage pi2 protein 38	NA
UHGV-0077038_46	eggNOG-mapper	476272.RUMHYD_01476	COG NOG18352 non supervised orthologous group	NA
UHGV-0077038_46	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0077038_47	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-0077038_47	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0077038_47	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0077038_47	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0077038_48	PHROG	phrog_88	major tail protein	tail
UHGV-0077038_48	UniRef90	UniRef90_A0A3E3EG64	Phage tail protein	NA
UHGV-0077038_48	eggNOG-mapper	476272.RUMHYD_01477	COG NOG11304 non supervised orthologous group	NA
UHGV-0077038_48	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0077038_48	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0077038_49	PHROG	phrog_709	NA	unknown function
UHGV-0077038_49	eggNOG-mapper	1392487.JIAD01000001_gene514	NA	NA
UHGV-0077038_49	Structural annotation	PF11836	NA	NA
UHGV-0077038_50	PHROG	phrog_3033	NA	unknown function
UHGV-0077038_51	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0077038_51	UniRef90	UniRef90_A0A3E3EH06	Phage tail tape measure protein	NA
UHGV-0077038_51	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-0077038_51	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0077038_51	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0077038_51	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0077038_51	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0077038_52	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0077038_52	UniRef90	UniRef90_A0A3E3EI44	Phage tail protein	NA
UHGV-0077038_52	eggNOG-mapper	999413.HMPREF1094_02000	phage tail	NA
UHGV-0077038_52	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0077038_52	COG	COG4722	Phage-related protein YomH	NA
UHGV-0077038_52	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0077038_53	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0077038_53	UniRef90	UniRef90_A0A3E3EG68	Peptidase S74 domain-containing protein	NA
UHGV-0077038_53	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0077038_53	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0077038_53	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0077038_53	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0077038_53	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0077038_53	COG	COG4926	Phage-related protein	NA
UHGV-0077038_53	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0077038_54	eggNOG-mapper	999413.HMPREF1094_01998	NA	NA
UHGV-0077038_56	PHROG	phrog_38707	NA	unknown function
UHGV-0077038_56	eggNOG-mapper	537007.BLAHAN_05239	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0077038_56	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0077038_57	PHROG	phrog_24267	NA	unknown function
UHGV-0077038_57	UniRef90	UniRef90_R5HGH3	Phage minor structural protein	NA
UHGV-0077038_57	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0077038_57	COG	COG4675	Phage tail collar domain	NA
UHGV-0077038_58	UniRef90	UniRef90_R7KBG5	Conserved domain protein	NA
UHGV-0077038_59	PHROG	phrog_1382	NA	unknown function
UHGV-0077038_59	Structural annotation	NF040910	NA	NA
UHGV-0077038_60	PHROG	phrog_199	holin	lysis
UHGV-0077038_60	UniRef90	UniRef90_UPI000E414CC9	phage holin family protein	NA
UHGV-0077038_60	eggNOG-mapper	469596.HMPREF9488_01337	Bacteriophage holin family	NA
UHGV-0077038_60	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0077038_60	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0077038_60	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0077038_60	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0077038_61	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0077038_61	PHROG	phrog_1794	amidase	lysis
UHGV-0077038_61	UniRef90	UniRef90_A0A3E3E9Q5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0077038_61	eggNOG-mapper	658088.HMPREF0987_01102	Ami_2	NA
UHGV-0077038_61	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0077038_61	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0077038_61	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0077038_61	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-0077038_64	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077038_64	UniRef90	UniRef90_A0A6B4QZ31	AP2 domain-containing protein	NA
UHGV-0077038_64	eggNOG-mapper	478749.BRYFOR_06584	AP2 domain protein	NA
UHGV-0077038_64	Pfam	PF21817	CapR homology domain	CapR
UHGV-0077038_64	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0077038_66	eggNOG-mapper	1232446.BAIE02000010_gene1963	NA	NA
UHGV-0077038_66	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0077038_66	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA