UHGV-0077041

Genome information

Genome length 38,995 bps

CDS count 61

Completeness 93.91% (high-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077041
vOTU ID	vOTU-075437
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_111677
BioSample	SAMEA2580014
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	5
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.01
Jumbo phage	No

Genome content
Genome length	38,995 bps
GC content	40.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	90.72%
Average CDS length	586.92 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077041_1	KOfam	K14059	int; integrase	NA
UHGV-0077041_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0077041_1	UniRef90	UniRef90_A0A829NH64	Tyr recombinase domain-containing protein	NA
UHGV-0077041_1	eggNOG-mapper	1232453.BAIF02000010_gene3323	Phage integrase family	NA
UHGV-0077041_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077041_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077041_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0077041_2	PHROG	phrog_16228	NA	unknown function
UHGV-0077041_2	UniRef90	UniRef90_A0A2N5NUN7	Uma2 domain-containing protein	NA
UHGV-0077041_2	eggNOG-mapper	500632.CLONEX_01584	Putative restriction endonuclease	NA
UHGV-0077041_2	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0077041_2	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0077041_2	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0077041_3	PHROG	phrog_29304	NA	unknown function
UHGV-0077041_3	UniRef90	UniRef90_UPI0010631ACC	type II toxin-antitoxin system MqsA family antitoxin	NA
UHGV-0077041_3	eggNOG-mapper	658086.HMPREF0994_03191	NA	NA
UHGV-0077041_3	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0077041_3	Structural annotation	PF14122, TIGR03829	NA	NA
UHGV-0077041_4	PHROG	phrog_38135	NA	unknown function
UHGV-0077041_4	UniRef90	UniRef90_A0A1C5X461	Transcription initiation factor TFIID, subunit TAF12 (Also component of histone acetyltransferase SAGA)	NA
UHGV-0077041_4	eggNOG-mapper	411470.RUMGNA_02177	belongs to the thioredoxin family	NA
UHGV-0077041_4	Pfam	PF14020	NA	DUF4236
UHGV-0077041_4	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0077041_4	Structural annotation	PF14020	NA	NA
UHGV-0077041_5	PHROG	phrog_2700	NA	unknown function
UHGV-0077041_5	UniRef90	UniRef90_UPI00051C0377	PH domain-containing protein	NA
UHGV-0077041_5	eggNOG-mapper	445335.CBN_1925	Short C-terminal domain	NA
UHGV-0077041_5	Pfam	PF14470	Bacterial PH domain	bPH_3
UHGV-0077041_5	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0077041_5	Structural annotation	PF14470, NF033891, COG3402	NA	NA
UHGV-0077041_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0077041_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0077041_6	UniRef90	UniRef90_A0A1C5X479	LexA repressor	NA
UHGV-0077041_6	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0077041_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0077041_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0077041_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0077041_6	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0077041_7	UniRef90	UniRef90_A0A2N5NUM8	DNA-binding protein	NA
UHGV-0077041_7	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077041_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077041_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077041_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0077041_9	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0077041_11	PHROG	phrog_585	NA	unknown function
UHGV-0077041_11	UniRef90	UniRef90_A0A413HZV5	NA	NA
UHGV-0077041_11	eggNOG-mapper	411465.PEPMIC_00712	NA	NA
UHGV-0077041_11	Pfam	PF10711	NA	DUF2513
UHGV-0077041_11	Structural annotation	PF10711, TIGR03433, COG3355	NA	NA
UHGV-0077041_15	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0077041_15	Structural annotation	PF10743, NF040990, COG3311	NA	NA
UHGV-0077041_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0077041_19	eggNOG-mapper	1232453.BAIF02000027_gene4199	NA	NA
UHGV-0077041_19	Structural annotation	PF01446	NA	NA
UHGV-0077041_20	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0077041_20	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0077041_20	UniRef90	UniRef90_R5TR44	RNase H type-1 domain-containing protein	NA
UHGV-0077041_20	eggNOG-mapper	1232453.BAIF02000027_gene4200	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0077041_20	Pfam	PF00075	RNase H	RNase_H
UHGV-0077041_20	COG	COG0328	Ribonuclease HI	NA
UHGV-0077041_20	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0077041_21	UniRef90	UniRef90_UPI001C0EE701	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0077041_21	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0077041_21	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0077041_22	PHROG	phrog_8470	NA	unknown function
UHGV-0077041_22	UniRef90	UniRef90_UPI00042669A6	PcfJ domain-containing protein	NA
UHGV-0077041_22	eggNOG-mapper	1235793.C809_02197	PcfJ-like protein	NA
UHGV-0077041_22	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0077041_22	Structural annotation	PF14284	NA	NA
UHGV-0077041_23	PHROG	phrog_15077	NA	unknown function
UHGV-0077041_23	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0077041_23	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0077041_24	PHROG	phrog_7566	NA	unknown function
UHGV-0077041_24	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0077041_25	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-0077041_27	PHROG	phrog_26861	NA	unknown function
UHGV-0077041_27	UniRef90	UniRef90_A0A6N3DBN6	Single-stranded DNA-binding protein	NA
UHGV-0077041_27	eggNOG-mapper	658655.HMPREF0988_01841	Single-strand binding protein family	NA
UHGV-0077041_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0077041_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0077041_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0077041_31	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0077041_31	Structural annotation	PF02996	NA	NA
UHGV-0077041_32	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0077041_32	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0077041_32	UniRef90	UniRef90_A0A132P7N9	Chromosome partitioning protein ParA	NA
UHGV-0077041_32	eggNOG-mapper	596329.HMPREF0631_1367	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0077041_32	Pfam	PF13614	AAA domain	AAA_31
UHGV-0077041_32	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0077041_32	Structural annotation	PF01656, MF_00355, NF041283, COG1192	NA	NA
UHGV-0077041_33	PHROG	phrog_6264	NA	unknown function
UHGV-0077041_33	eggNOG-mapper	887325.HMPREF0381_0349	NA	NA
UHGV-0077041_34	PHROG	phrog_7540	NA	unknown function
UHGV-0077041_34	eggNOG-mapper	887325.HMPREF0381_0348	NA	NA
UHGV-0077041_35	eggNOG-mapper	553973.CLOHYLEM_05570	NA	NA
UHGV-0077041_37	UniRef90	UniRef90_UPI00156EF43B	chemotaxis protein	NA
UHGV-0077041_37	eggNOG-mapper	658088.HMPREF0987_01711	NA	NA
UHGV-0077041_37	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0077041_38	UniRef90	UniRef90_A0A2N5Q1T5	Chemotaxis protein	NA
UHGV-0077041_38	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0077041_39	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0077041_39	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077041_39	UniRef90	UniRef90_R5TPY3	Phage related protein	NA
UHGV-0077041_39	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0077041_39	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0077041_39	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0077041_40	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0077041_40	UniRef90	UniRef90_UPI001A9A3020	P27 family phage terminase small subunit	NA
UHGV-0077041_40	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0077041_40	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0077041_40	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0077041_41	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0077041_41	UniRef90	UniRef90_A0A2N5NUK9	Terminase	NA
UHGV-0077041_41	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0077041_41	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0077041_41	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0077041_41	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0077041_41	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0077041_42	PHROG	phrog_12	portal protein	head and packaging
UHGV-0077041_42	UniRef90	UniRef90_R5TQ78	Phage portal protein HK97 family	NA
UHGV-0077041_42	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0077041_42	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0077041_42	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0077041_42	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0077041_42	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0077041_44	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0077041_44	UniRef90	UniRef90_A0A829NQN8	Bro-N domain-containing protein	NA
UHGV-0077041_44	eggNOG-mapper	397290.C810_01420	BRO family, N-terminal domain	NA
UHGV-0077041_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0077041_44	COG	COG3617	Prophage antirepressor	NA
UHGV-0077041_44	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-0077041_45	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0077041_45	eggNOG-mapper	445971.ANASTE_01016	NA	NA
UHGV-0077041_45	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0077041_46	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0077041_46	UniRef90	UniRef90_A0A829NVK8	ORF6N domain-containing protein	NA
UHGV-0077041_46	eggNOG-mapper	478749.BRYFOR_07644	ORF6N domain	NA
UHGV-0077041_46	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0077041_46	Structural annotation	PF10543, TIGR02681, COG3561	NA	NA
UHGV-0077041_47	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0077041_47	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0077041_47	UniRef90	UniRef90_A0A6N3GKE0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0077041_47	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-0077041_47	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0077041_47	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0077041_47	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0077041_48	PHROG	phrog_10	major head protein	head and packaging
UHGV-0077041_48	UniRef90	UniRef90_A0A4R3JAF4	HK97 family phage major capsid protein	NA
UHGV-0077041_48	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0077041_48	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0077041_48	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0077041_48	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077041_48	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0077041_49	PHROG	phrog_749	NA	unknown function
UHGV-0077041_49	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0077041_50	PHROG	phrog_19734	NA	unknown function
UHGV-0077041_50	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0077041_50	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0077041_51	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0077041_51	UniRef90	UniRef90_A0A4R3JAK0	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-0077041_51	eggNOG-mapper	411473.RUMCAL_01154	NA	NA
UHGV-0077041_51	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0077041_51	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0077041_52	PHROG	phrog_78	tail terminator	connector
UHGV-0077041_52	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0077041_52	Structural annotation	PF20765	NA	NA
UHGV-0077041_53	PHROG	phrog_88	major tail protein	tail
UHGV-0077041_53	UniRef90	UniRef90_A0A2N5NUL1	Phage tail protein	NA
UHGV-0077041_53	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0077041_53	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0077041_54	PHROG	phrog_709	NA	unknown function
UHGV-0077041_54	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-0077041_54	Structural annotation	PF11836	NA	NA
UHGV-0077041_55	PHROG	phrog_3033	NA	unknown function
UHGV-0077041_55	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0077041_55	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0077041_56	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0077041_56	UniRef90	UniRef90_R5TQ69	PhageMin_Tail domain-containing protein	NA
UHGV-0077041_56	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-0077041_56	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0077041_56	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0077041_56	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0077041_56	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0077041_57	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0077041_57	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-0077041_57	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0077041_57	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0077041_57	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0077041_57	COG	COG4722	Phage-related protein YomH	NA
UHGV-0077041_57	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0077041_58	PHROG	phrog_13289	tail protein	tail
UHGV-0077041_58	UniRef90	UniRef90_A0A412C574	Prophage_tail domain-containing protein	NA
UHGV-0077041_58	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0077041_58	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0077041_58	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0077041_58	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0077041_58	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0077041_59	PHROG	phrog_14030	NA	unknown function
UHGV-0077041_59	UniRef90	UniRef90_A0A6N3GLP8	Phage_lysozyme2 domain-containing protein	NA
UHGV-0077041_59	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0077041_59	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0077041_59	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0077041_59	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0077041_60	PHROG	phrog_21765	NA	unknown function
UHGV-0077041_60	UniRef90	UniRef90_UPI000E4B80F2	collagen-like protein	NA
UHGV-0077041_60	eggNOG-mapper	97139.C824_05954	NA	NA
UHGV-0077041_61	PHROG	phrog_16164	NA	unknown function
UHGV-0077041_61	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA