UHGV-0077106

Genome information

Genome length 42,768 bps

CDS count 65

Completeness 99.90% (high-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077106
vOTU ID	vOTU-011286
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_122218
BioSample	SAMEA2579944
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.98
Jumbo phage	No

Genome content
Genome length	42,768 bps
GC content	42.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	91.09%
Average CDS length	604.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077106_1	KOfam	K14059	int; integrase	NA
UHGV-0077106_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0077106_1	UniRef90	UniRef90_A0A096AJ67	Tyr recombinase domain-containing protein	NA
UHGV-0077106_1	eggNOG-mapper	1401067.HMPREF0872_06920	Belongs to the 'phage' integrase family	NA
UHGV-0077106_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077106_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077106_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0077106_2	PHROG	phrog_1914	NA	unknown function
UHGV-0077106_2	UniRef90	UniRef90_A0A6N2YXV2	Peptidase_M78 domain-containing protein	NA
UHGV-0077106_2	eggNOG-mapper	697282.Mettu_3823	NA	NA
UHGV-0077106_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0077106_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0077106_3	UniRef90	UniRef90_R5BH72	Transcriptional regulator Cro/CI family protein	NA
UHGV-0077106_3	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077106_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077106_3	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-0077106_4	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0077106_5	PHROG	phrog_6058	NA	unknown function
UHGV-0077106_5	eggNOG-mapper	1123288.SOV_2c10360	NA	NA
UHGV-0077106_8	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0077106_8	PHROG	phrog_1499	NA	unknown function
UHGV-0077106_8	UniRef90	UniRef90_A0A0J1FSQ3	DNA replication and repair protein RecF	NA
UHGV-0077106_8	eggNOG-mapper	1235792.C808_05391	AAA domain	NA
UHGV-0077106_8	Pfam	PF13476	AAA domain	AAA_23
UHGV-0077106_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0077106_8	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0077106_9	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0077106_9	UniRef90	UniRef90_F0SXE1	NA	NA
UHGV-0077106_9	eggNOG-mapper	1232449.BAHV02000018_gene1547	AAA domain	NA
UHGV-0077106_9	Pfam	PF13479	AAA domain	AAA_24
UHGV-0077106_9	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0077106_10	PHROG	phrog_2698	NA	unknown function
UHGV-0077106_10	UniRef90	UniRef90_A0A5F0K1Y3	NA	NA
UHGV-0077106_10	eggNOG-mapper	1232449.BAHV02000008_gene619	NA	NA
UHGV-0077106_10	Structural annotation	PF05037	NA	NA
UHGV-0077106_11	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0077106_11	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0077106_11	UniRef90	UniRef90_R5H5E1	DNA or RNA helicases of superfamily II	NA
UHGV-0077106_11	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0077106_11	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0077106_11	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0077106_11	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0077106_11	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0077106_11	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0077106_12	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0077106_12	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0077106_12	UniRef90	UniRef90_A0A2A2IIX4	DNA primase	NA
UHGV-0077106_12	eggNOG-mapper	1273103.NM10_06846	Primase C terminal 2 (PriCT-2)	NA
UHGV-0077106_12	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0077106_12	Pfam	PF13481	AAA domain	AAA_25
UHGV-0077106_12	COG	COG3598	RecA-family ATPase	NA
UHGV-0077106_12	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0077106_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0077106_13	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0077106_13	UniRef90	UniRef90_D1YMB8	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0077106_13	eggNOG-mapper	1123315.AUIP01000003_gene219	crossover junction endodeoxyribonuclease RusA	NA
UHGV-0077106_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0077106_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0077106_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0077106_15	PHROG	phrog_236	nucleotide kinase	other
UHGV-0077106_15	UniRef90	UniRef90_UPI000F8C5AD3	NA	NA
UHGV-0077106_15	eggNOG-mapper	1265845.PWEIH_00490	NA	NA
UHGV-0077106_15	Pfam	PF11753	NA	DUF3310
UHGV-0077106_17	PHROG	phrog_21026	NA	unknown function
UHGV-0077106_18	PHROG	phrog_1672	NA	unknown function
UHGV-0077106_22	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0077106_22	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0077106_22	UniRef90	UniRef90_R5BH95	N-6 DNA Methylase	NA
UHGV-0077106_22	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0077106_22	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0077106_22	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0077106_22	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0077106_22	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0077106_24	PHROG	phrog_1672	NA	unknown function
UHGV-0077106_24	eggNOG-mapper	1111454.HMPREF1250_0272	NA	NA
UHGV-0077106_29	PHROG	phrog_6568	NA	unknown function
UHGV-0077106_29	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0077106_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0077106_30	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-0077106_30	eggNOG-mapper	568816.Acin_1931	sigma factor activity	NA
UHGV-0077106_30	Pfam	PF07374	NA	DUF1492
UHGV-0077106_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0077106_30	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0077106_31	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0077106_31	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0077106_31	eggNOG-mapper	469381.Dpep_0026	transposase activity	NA
UHGV-0077106_31	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0077106_31	Structural annotation	PF07471, COG4220	NA	NA
UHGV-0077106_32	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0077106_32	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0077106_32	UniRef90	UniRef90_UPI001E621E89	phage terminase large subunit family protein	NA
UHGV-0077106_32	eggNOG-mapper	883156.HMPREF9282_01236	Phage terminase large subunit (GpA)	NA
UHGV-0077106_32	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0077106_32	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0077106_32	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0077106_32	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0077106_32	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0077106_33	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0077106_33	UniRef90	UniRef90_A0A3G2R5U7	Peptidylprolyl isomerase	NA
UHGV-0077106_33	eggNOG-mapper	1274374.CBLK010000060_gene527	NA	NA
UHGV-0077106_33	Structural annotation	PF19645	NA	NA
UHGV-0077106_34	PHROG	phrog_21	portal protein	head and packaging
UHGV-0077106_34	UniRef90	UniRef90_UPI00047DEEF4	phage portal protein	NA
UHGV-0077106_34	eggNOG-mapper	883156.HMPREF9282_01238	Phage portal protein, lambda family	NA
UHGV-0077106_34	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0077106_34	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0077106_34	COG	COG5511	Phage capsid protein	NA
UHGV-0077106_34	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0077106_35	KOfam	K06904	NA	NA
UHGV-0077106_35	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0077106_35	UniRef90	UniRef90_A0A6N3FK50	Caudovirus prohead protease	NA
UHGV-0077106_35	eggNOG-mapper	883156.HMPREF9282_01239	Caudovirus prohead protease	NA
UHGV-0077106_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0077106_35	COG	COG3087	Cell division protein FtsN	NA
UHGV-0077106_35	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0077106_36	PHROG	phrog_122	head decoration	head and packaging
UHGV-0077106_36	UniRef90	UniRef90_A0A3L7QRI5	NA	NA
UHGV-0077106_36	eggNOG-mapper	469381.Dpep_0021	NA	NA
UHGV-0077106_36	Pfam	PF09956	NA	DUF2190
UHGV-0077106_36	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0077106_36	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0077106_37	PHROG	phrog_2551	minor tail protein	tail
UHGV-0077106_37	UniRef90	UniRef90_J4KCN4	Sugar ABC transporter, ATP-binding protein	NA
UHGV-0077106_37	eggNOG-mapper	349161.Dred_1208	NA	NA
UHGV-0077106_37	Structural annotation	PF13856	NA	NA
UHGV-0077106_38	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0077106_38	eggNOG-mapper	1415774.U728_504	Prophage minor tail protein Z (GPZ)	NA
UHGV-0077106_38	Structural annotation	PF06763	NA	NA
UHGV-0077106_40	KOfam	K06907	NA	NA
UHGV-0077106_40	PHROG	phrog_23	tail sheath	tail
UHGV-0077106_40	UniRef90	UniRef90_UPI0018C7C12F	phage tail sheath family protein	NA
UHGV-0077106_40	eggNOG-mapper	936573.HMPREF1147_1726	COG3497 Phage tail sheath protein FI	NA
UHGV-0077106_40	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0077106_40	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0077106_41	KOfam	K06908	NA	NA
UHGV-0077106_41	PHROG	phrog_55	head closure	connector
UHGV-0077106_41	UniRef90	UniRef90_UPI001D0104CC	phage major tail tube protein	NA
UHGV-0077106_41	eggNOG-mapper	1197719.A464_2011	Phage tail tube protein FII	NA
UHGV-0077106_41	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0077106_41	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0077106_41	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0077106_42	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0077106_42	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0077106_43	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0077106_43	UniRef90	UniRef90_UPI0018C805B7	phage tail tape measure protein	NA
UHGV-0077106_43	eggNOG-mapper	936573.HMPREF1147_1730	Phage-related minor tail protein	NA
UHGV-0077106_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0077106_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0077106_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0077106_43	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0077106_44	PHROG	phrog_46	tail protein	tail
UHGV-0077106_44	UniRef90	UniRef90_A0A6N9P6I0	Phage tail protein	NA
UHGV-0077106_44	eggNOG-mapper	888055.HMPREF9015_01028	positive regulation of growth rate	NA
UHGV-0077106_44	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0077106_44	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0077106_44	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0077106_45	KOfam	K06905	NA	NA
UHGV-0077106_45	PHROG	phrog_52	tail protein	tail
UHGV-0077106_45	UniRef90	UniRef90_R5BQ93	Phage late control D family protein	NA
UHGV-0077106_45	eggNOG-mapper	1280706.AUJE01000010_gene671	COG3500 Phage protein D	NA
UHGV-0077106_45	COG	COG3500	NA	NA
UHGV-0077106_45	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0077106_46	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0077106_46	UniRef90	UniRef90_R5BLH5	Phage baseplate assembly protein V	NA
UHGV-0077106_46	eggNOG-mapper	349161.Dred_1217	Baseplate assembly protein	NA
UHGV-0077106_46	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0077106_46	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0077106_46	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0077106_46	Structural annotation	PF05606, MF_00216, TIGR01644, COG4540	NA	NA
UHGV-0077106_47	PHROG	phrog_76	tail protein	tail
UHGV-0077106_47	UniRef90	UniRef90_UPI00036BFA62	phage tail protein	NA
UHGV-0077106_47	eggNOG-mapper	1122917.KB899659_gene6076	Phage P2 GpU	NA
UHGV-0077106_47	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0077106_47	COG	COG3499	NA	NA
UHGV-0077106_48	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0077106_48	UniRef90	UniRef90_D5EF97	GPW/gp25 family protein	NA
UHGV-0077106_48	eggNOG-mapper	572547.Amico_1105	GPW Gp25 family protein	NA
UHGV-0077106_48	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0077106_48	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0077106_49	PHROG	phrog_6	baseplate protein	tail
UHGV-0077106_49	UniRef90	UniRef90_UPI0018EAF17E	baseplate J/gp47 family protein	NA
UHGV-0077106_49	eggNOG-mapper	1501230.ET33_26365	Baseplate J-like protein	NA
UHGV-0077106_49	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0077106_49	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0077106_49	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0077106_50	PHROG	phrog_14404	baseplate protein	tail
UHGV-0077106_50	UniRef90	UniRef90_UPI0018C60488	phage tail protein I	NA
UHGV-0077106_50	eggNOG-mapper	927704.SELR_16640	Phage tail protein (Tail_P2_I)	NA
UHGV-0077106_50	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0077106_50	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0077106_50	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0077106_51	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0077106_51	UniRef90	UniRef90_UPI0018C70641	phage tail protein	NA
UHGV-0077106_51	eggNOG-mapper	484770.UFO1_1716	Phage tail-collar fibre protein	NA
UHGV-0077106_51	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0077106_51	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0077106_51	Structural annotation	PF12571, NF012201	NA	NA
UHGV-0077106_55	KOfam	K14059	int; integrase	NA
UHGV-0077106_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0077106_55	UniRef90	UniRef90_UPI000F8D48B0	tyrosine-type recombinase/integrase	NA
UHGV-0077106_55	eggNOG-mapper	1005058.UMN179_01641	Belongs to the 'phage' integrase family	NA
UHGV-0077106_55	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0077106_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077106_55	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0077106_55	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0077106_56	PHROG	phrog_32639	NA	unknown function
UHGV-0077106_56	Structural annotation	PF21611	NA	NA
UHGV-0077106_59	PHROG	phrog_27828	NA	unknown function
UHGV-0077106_59	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0077106_59	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0077106_60	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0077106_60	PHROG	phrog_435	endolysin	lysis
UHGV-0077106_60	UniRef90	UniRef90_A0A6N3AH69	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0077106_60	eggNOG-mapper	883156.HMPREF9282_00971	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0077106_60	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0077106_60	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0077106_60	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0077106_61	PHROG	phrog_10797	NA	unknown function
UHGV-0077106_61	eggNOG-mapper	883156.HMPREF9282_01266	NA	NA
UHGV-0077106_61	Structural annotation	PF06531	NA	NA
UHGV-0077106_63	PHROG	phrog_14350	NA	unknown function
UHGV-0077106_63	eggNOG-mapper	679201.HMPREF9334_00497	NA	NA
UHGV-0077106_64	eggNOG-mapper	592031.GCWU000322_00057	NA	NA
UHGV-0077106_65	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0077106_65	UniRef90	UniRef90_A0A096AMT3	HTH_59 domain-containing protein	NA
UHGV-0077106_65	eggNOG-mapper	1401067.HMPREF0872_00160	NA	NA
UHGV-0077106_65	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0077106_65	Structural annotation	PF20038, TIGR01764	NA	NA